Prebiotic Evolution
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Abiogenesis is the natural process by which
life Life, also known as biota, refers to matter that has biological processes, such as Cell signaling, signaling and self-sustaining processes. It is defined descriptively by the capacity for homeostasis, Structure#Biological, organisation, met ...
arises from non-living matter, such as simple
organic compound Some chemical authorities define an organic compound as a chemical compound that contains a carbon–hydrogen or carbon–carbon bond; others consider an organic compound to be any chemical compound that contains carbon. For example, carbon-co ...
s. The prevailing scientific
hypothesis A hypothesis (: hypotheses) is a proposed explanation for a phenomenon. A scientific hypothesis must be based on observations and make a testable and reproducible prediction about reality, in a process beginning with an educated guess o ...
is that the transition from non-living to living entities on Earth was not a single event, but a process of increasing complexity involving the formation of a
habitable planet Planetary habitability is the measure of a planet's or a natural satellite's potential to develop and sustain an environment hospitable to life. Life may be generated directly on a planet or satellite endogenously. Research suggests that life ...
, the prebiotic synthesis of organic molecules, molecular
self-replication Self-replication is any behavior of a dynamical system that yields construction of an identical or similar copy of itself. Biological cells, given suitable environments, reproduce by cell division. During cell division, DNA is replicated and c ...
,
self-assembly Self-assembly is a process in which a disordered system of pre-existing components forms an organized structure or pattern as a consequence of specific, local interactions among the components themselves, without external direction. When the ...
,
autocatalysis In chemistry, a chemical reaction is said to be autocatalytic if one of the reaction products is also a catalyst for the same reaction. Many forms of autocatalysis are recognized.Steinfeld J.I., Francisco J.S. and Hase W.L. ''Chemical Kinetics and ...
, and the emergence of
cell membrane The cell membrane (also known as the plasma membrane or cytoplasmic membrane, and historically referred to as the plasmalemma) is a biological membrane that separates and protects the interior of a cell from the outside environment (the extr ...
s. The transition from non-life to life has never been observed experimentally, but many proposals have been made for different stages of the process. The study of abiogenesis aims to determine how pre-life
chemical reaction A chemical reaction is a process that leads to the chemistry, chemical transformation of one set of chemical substances to another. When chemical reactions occur, the atoms are rearranged and the reaction is accompanied by an Gibbs free energy, ...
s gave rise to life under conditions strikingly different from those on Earth today. It primarily uses tools from
biology Biology is the scientific study of life and living organisms. It is a broad natural science that encompasses a wide range of fields and unifying principles that explain the structure, function, growth, History of life, origin, evolution, and ...
and
chemistry Chemistry is the scientific study of the properties and behavior of matter. It is a physical science within the natural sciences that studies the chemical elements that make up matter and chemical compound, compounds made of atoms, molecules a ...
, with more recent approaches attempting a synthesis of many sciences. Life functions through the specialized chemistry of
carbon Carbon () is a chemical element; it has chemical symbol, symbol C and atomic number 6. It is nonmetallic and tetravalence, tetravalent—meaning that its atoms are able to form up to four covalent bonds due to its valence shell exhibiting 4 ...
and water, and builds largely upon four key families of chemicals:
lipid Lipids are a broad group of organic compounds which include fats, waxes, sterols, fat-soluble vitamins (such as vitamins A, D, E and K), monoglycerides, diglycerides, phospholipids, and others. The functions of lipids include storing ...
s for cell membranes,
carbohydrate A carbohydrate () is a biomolecule composed of carbon (C), hydrogen (H), and oxygen (O) atoms. The typical hydrogen-to-oxygen atomic ratio is 2:1, analogous to that of water, and is represented by the empirical formula (where ''m'' and ''n'' ...
s such as sugars,
amino acid Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although over 500 amino acids exist in nature, by far the most important are the 22 α-amino acids incorporated into proteins. Only these 22 a ...
s for protein metabolism, and
nucleic acid Nucleic acids are large biomolecules that are crucial in all cells and viruses. They are composed of nucleotides, which are the monomer components: a pentose, 5-carbon sugar, a phosphate group and a nitrogenous base. The two main classes of nuclei ...
DNA Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
and
RNA Ribonucleic acid (RNA) is a polymeric molecule that is essential for most biological functions, either by performing the function itself (non-coding RNA) or by forming a template for the production of proteins (messenger RNA). RNA and deoxyrib ...
for the mechanisms of heredity. Any successful theory of abiogenesis must explain the origins and interactions of these classes of molecules. Many approaches to abiogenesis investigate how self-replicating molecules, or their components, came into existence. Researchers generally think that current life descends from an
RNA world The RNA world is a hypothetical stage in the evolutionary history of life on Earth in which self-replicating RNA molecules proliferated before the evolution of DNA and proteins. The term also refers to the hypothesis that posits the existence ...
, although other self-replicating and self-catalyzing molecules may have preceded RNA. Other approaches ( "metabolism-first" hypotheses) focus on understanding how
catalysis Catalysis () is the increase in rate of a chemical reaction due to an added substance known as a catalyst (). Catalysts are not consumed by the reaction and remain unchanged after it. If the reaction is rapid and the catalyst recycles quick ...
in chemical systems on the early Earth might have provided the precursor molecules necessary for self-replication. The classic 1952
Miller–Urey experiment The Miller–Urey experiment, or Miller experiment, was an experiment in chemical synthesis carried out in 1952 that simulated the conditions thought at the time to be present in the Prebiotic atmosphere, atmosphere of the early, prebiotic Earth ...
demonstrated that most amino acids, the chemical constituents of
protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residue (biochemistry), residues. Proteins perform a vast array of functions within organisms, including Enzyme catalysis, catalysing metab ...
s, can be synthesized from
inorganic compound An inorganic compound is typically a chemical compound that lacks carbon–hydrogen bonds⁠that is, a compound that is not an organic compound. The study of inorganic compounds is a subfield of chemistry known as ''inorganic chemistry''. Inorgan ...
s under conditions intended to replicate those of the
early Earth Early Earth also known as Proto-Earth is loosely defined as Earth in its first one billion years, or gigayear (Ga, 109 y), from its initial formation in the young Solar System at about 4.55 Ga to some time in the Archean eon in approximately 3.5 Ga ...
. External sources of energy may have triggered these reactions, including
lightning Lightning is a natural phenomenon consisting of electrostatic discharges occurring through the atmosphere between two electrically charged regions. One or both regions are within the atmosphere, with the second region sometimes occurring on ...
,
radiation In physics, radiation is the emission or transmission of energy in the form of waves or particles through space or a material medium. This includes: * ''electromagnetic radiation'' consisting of photons, such as radio waves, microwaves, infr ...
, atmospheric entries of micro-meteorites, and implosion of bubbles in sea and ocean waves. More recent research has found amino acids in meteorites, comets, asteroids, and star-forming regions of space. While the
last universal common ancestor The last universal common ancestor (LUCA) is the hypothesized common ancestral cell from which the three domains of life, the Bacteria, the Archaea, and the Eukarya originated. The cell had a lipid bilayer; it possessed the genetic code a ...
of all modern organisms (LUCA) is thought to have existed long after the origin of life, investigations into LUCA can guide research into early universal characteristics. A
genomics Genomics is an interdisciplinary field of molecular biology focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as well as its hierarchical, ...
approach has sought to characterize LUCA by identifying the genes shared by
Archaea Archaea ( ) is a Domain (biology), domain of organisms. Traditionally, Archaea only included its Prokaryote, prokaryotic members, but this has since been found to be paraphyletic, as eukaryotes are known to have evolved from archaea. Even thou ...
and
Bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ...
, members of the two major branches of life (with
Eukaryote The eukaryotes ( ) constitute the Domain (biology), domain of Eukaryota or Eukarya, organisms whose Cell (biology), cells have a membrane-bound cell nucleus, nucleus. All animals, plants, Fungus, fungi, seaweeds, and many unicellular organisms ...
s included in the archaean branch in the
two-domain system The two-domain system is a biological classification by which all organisms in the tree of life are classified into two domains, Bacteria and Archaea. It emerged from development of knowledge of archaea diversity and challenges the widely accept ...
). It appears there are 60 proteins common to all life and 355 prokaryotic genes that trace to LUCA; their functions imply that the LUCA was
anaerobic Anaerobic means "living, active, occurring, or existing in the absence of free oxygen", as opposed to aerobic which means "living, active, or occurring only in the presence of oxygen." Anaerobic may also refer to: *Adhesive#Anaerobic, Anaerobic ad ...
with the
Wood–Ljungdahl pathway The Wood–Ljungdahl pathway is a set of biochemical reactions used by some bacteria. It is also known as the reductive acetyl-coenzyme A (acetyl-CoA) pathway. This pathway enables these organisms to use hydrogen () as an electron donor, and c ...
, deriving energy by
chemiosmosis Chemiosmosis is the movement of ions across a semipermeable membrane bound structure, down their electrochemical gradient. An important example is the formation of adenosine triphosphate, adenosine triphosphate (ATP) by the movement of hydrogen ion ...
, and maintaining its hereditary material with DNA, the
genetic code Genetic code is a set of rules used by living cell (biology), cells to Translation (biology), translate information encoded within genetic material (DNA or RNA sequences of nucleotide triplets or codons) into proteins. Translation is accomplished ...
, and
ribosome Ribosomes () are molecular machine, macromolecular machines, found within all cell (biology), cells, that perform Translation (biology), biological protein synthesis (messenger RNA translation). Ribosomes link amino acids together in the order s ...
s. Although the LUCA lived over 4 billion years ago (4 
Gya Gya or GYA may refer to: * Gya (unit), symbol for ''gigayears ago'', a unit of time equal to one billion (short-scale, i.e. 1,000,000,000) years before present. * Gya, symbol for the gray, a unit of radiation exposure, equal to 100 roentgen * Gy ...
), researchers believe it was far from the first form of life. Most evidence suggests that earlier cells might have had a leaky membrane and been powered by a naturally occurring
proton gradient An electrochemical gradient is a gradient of electrochemical potential, usually for an ion that can move across a membrane. The gradient consists of two parts: * The chemical gradient, or difference in solute concentration across a membrane. ...
near a deep-sea white smoker
hydrothermal vent Hydrothermal vents are fissures on the seabed from which geothermally heated water discharges. They are commonly found near volcanically active places, areas where tectonic plates are moving apart at mid-ocean ridges, ocean basins, and hot ...
; however, other evidence suggests instead that life may have originated inside the continental crust or in water at Earth's surface. Earth remains the only place in the
universe The universe is all of space and time and their contents. It comprises all of existence, any fundamental interaction, physical process and physical constant, and therefore all forms of matter and energy, and the structures they form, from s ...
known to harbor life.
Geochemical Geochemistry is the science that uses the tools and principles of chemistry to explain the mechanisms behind major geological systems such as the Earth's crust and its oceans. The realm of geochemistry extends beyond the Earth, encompassing the ...
and fossil evidence from the Earth informs most studies of abiogenesis. The
Earth Earth is the third planet from the Sun and the only astronomical object known to Planetary habitability, harbor life. This is enabled by Earth being an ocean world, the only one in the Solar System sustaining liquid surface water. Almost all ...
was formed at 4.54 Gya, and the earliest evidence of life on Earth dates from at least 3.8 Gya from
Western Australia Western Australia (WA) is the westernmost state of Australia. It is bounded by the Indian Ocean to the north and west, the Southern Ocean to the south, the Northern Territory to the north-east, and South Australia to the south-east. Western Aust ...
. Some studies have suggested that fossil micro-organisms may have lived within hydrothermal vent precipitates dated 3.77 to 4.28 Gya from Quebec, soon after ocean formation 4.4 Gya during the
Hadean The Hadean ( ) is the first and oldest of the four geologic eons of Earth's history, starting with the planet's formation about 4.6  billion years ago (estimated 4567.30 ± 0.16 million years ago set by the age of the oldest solid material ...
.


Overview

Life Life, also known as biota, refers to matter that has biological processes, such as Cell signaling, signaling and self-sustaining processes. It is defined descriptively by the capacity for homeostasis, Structure#Biological, organisation, met ...
consists of reproduction with (heritable) variations.
NASA The National Aeronautics and Space Administration (NASA ) is an independent agencies of the United States government, independent agency of the federal government of the United States, US federal government responsible for the United States ...
defines life as "a self-sustaining chemical system capable of
Darwinian evolution ''Darwinism'' is a term used to describe a theory of biological evolution developed by the English naturalist Charles Darwin (1809–1882) and others. The theory states that all species of organisms arise and develop through the natural sele ...
." Such a system is complex; the
last universal common ancestor The last universal common ancestor (LUCA) is the hypothesized common ancestral cell from which the three domains of life, the Bacteria, the Archaea, and the Eukarya originated. The cell had a lipid bilayer; it possessed the genetic code a ...
(LUCA), presumably a single-celled organism which lived some 4 billion years ago, already had hundreds of
gene In biology, the word gene has two meanings. The Mendelian gene is a basic unit of heredity. The molecular gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protei ...
s encoded in the
DNA Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
genetic code Genetic code is a set of rules used by living cell (biology), cells to Translation (biology), translate information encoded within genetic material (DNA or RNA sequences of nucleotide triplets or codons) into proteins. Translation is accomplished ...
that is universal today. That in turn implies a suite of cellular machinery including
messenger RNA In molecular biology, messenger ribonucleic acid (mRNA) is a single-stranded molecule of RNA that corresponds to the genetic sequence of a gene, and is read by a ribosome in the process of synthesizing a protein. mRNA is created during the ...
,
transfer RNA Transfer ribonucleic acid (tRNA), formerly referred to as soluble ribonucleic acid (sRNA), is an adaptor molecule composed of RNA, typically 76 to 90 nucleotides in length (in eukaryotes). In a cell, it provides the physical link between the gene ...
, and
ribosome Ribosomes () are molecular machine, macromolecular machines, found within all cell (biology), cells, that perform Translation (biology), biological protein synthesis (messenger RNA translation). Ribosomes link amino acids together in the order s ...
s to translate the code into
protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residue (biochemistry), residues. Proteins perform a vast array of functions within organisms, including Enzyme catalysis, catalysing metab ...
s. Those proteins included
enzyme An enzyme () is a protein that acts as a biological catalyst by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme converts the substrates into different mol ...
s to operate its
anaerobic respiration Anaerobic respiration is respiration using electron acceptors other than molecular oxygen (O2). Although oxygen is not the final electron acceptor, the process still uses a respiratory electron transport chain. In aerobic organisms undergoing ...
via the Wood–Ljungdahl metabolic pathway, and a
DNA polymerase A DNA polymerase is a member of a family of enzymes that catalyze the synthesis of DNA molecules from nucleoside triphosphates, the molecular precursors of DNA. These enzymes are essential for DNA replication and usually work in groups to create t ...
to replicate its genetic material. The challenge for abiogenesis (origin of life) researchers is to explain how such a complex and tightly interlinked system could develop by evolutionary steps, as at first sight all its parts are necessary to enable it to function. For example, a cell, whether the LUCA or in a modern organism, copies its DNA with the DNA polymerase enzyme, which is itself produced by translating the DNA polymerase gene in the DNA. Neither the enzyme nor the DNA can be produced without the other. The likely answer to this challenge is that the evolutionary process could have involved molecular
self-replication Self-replication is any behavior of a dynamical system that yields construction of an identical or similar copy of itself. Biological cells, given suitable environments, reproduce by cell division. During cell division, DNA is replicated and c ...
,
self-assembly Self-assembly is a process in which a disordered system of pre-existing components forms an organized structure or pattern as a consequence of specific, local interactions among the components themselves, without external direction. When the ...
such as of
cell membrane The cell membrane (also known as the plasma membrane or cytoplasmic membrane, and historically referred to as the plasmalemma) is a biological membrane that separates and protects the interior of a cell from the outside environment (the extr ...
s, and
autocatalysis In chemistry, a chemical reaction is said to be autocatalytic if one of the reaction products is also a catalyst for the same reaction. Many forms of autocatalysis are recognized.Steinfeld J.I., Francisco J.S. and Hase W.L. ''Chemical Kinetics and ...
via RNA
ribozyme Ribozymes (ribonucleic acid enzymes) are RNA molecules that have the ability to Catalysis, catalyze specific biochemical reactions, including RNA splicing in gene expression, similar to the action of protein enzymes. The 1982 discovery of ribozy ...
s in an
RNA world The RNA world is a hypothetical stage in the evolutionary history of life on Earth in which self-replicating RNA molecules proliferated before the evolution of DNA and proteins. The term also refers to the hypothesis that posits the existence ...
environment. Nonetheless, the transition of non-life to life has never been observed experimentally, nor has there been a satisfactory chemical explanation. The preconditions to the development of a living cell like the LUCA are known, though disputed in detail: a habitable world is formed with a supply of minerals and liquid water. Prebiotic synthesis creates a range of simple organic compounds, which are assembled into polymers such as proteins and RNA. On the other side, the process after the LUCA is readily understood: biological evolution caused the development of a wide range of species with varied forms and biochemical capabilities. However, the derivation of the LUCA from simple components is far from understood. Although Earth remains the only place where life is known, the science of
astrobiology Astrobiology (also xenology or exobiology) is a scientific field within the List of life sciences, life and environmental sciences that studies the abiogenesis, origins, Protocell, early evolution, distribution, and future of life in the univ ...
seeks evidence of life on other planets. The 2015 NASA strategy on the origin of life aimed to solve the puzzle by identifying interactions, intermediary structures and functions, energy sources, and environmental factors that contributed to evolvable macromolecular systems, and mapping the chemical landscape of potential primordial informational
polymer A polymer () is a chemical substance, substance or material that consists of very large molecules, or macromolecules, that are constituted by many repeat unit, repeating subunits derived from one or more species of monomers. Due to their br ...
s. The advent of such polymers was most likely a critical step in prebiotic chemical evolution. Those polymers derived, in turn, from simple
organic compound Some chemical authorities define an organic compound as a chemical compound that contains a carbon–hydrogen or carbon–carbon bond; others consider an organic compound to be any chemical compound that contains carbon. For example, carbon-co ...
s such as
nucleobase Nucleotide bases (also nucleobases, nitrogenous bases) are nitrogen-containing biological compounds that form nucleosides, which, in turn, are components of nucleotides, with all of these monomers constituting the basic building blocks of nuc ...
s,
amino acid Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although over 500 amino acids exist in nature, by far the most important are the 22 α-amino acids incorporated into proteins. Only these 22 a ...
s, and
sugar Sugar is the generic name for sweet-tasting, soluble carbohydrates, many of which are used in food. Simple sugars, also called monosaccharides, include glucose Glucose is a sugar with the Chemical formula#Molecular formula, molecul ...
s, likely formed by reactions in the environment. A successful theory of the origin of life must explain how all these chemicals came into being.


Pre-1960s conceptual history


Spontaneous generation

One ancient view of the origin of life, from
Aristotle Aristotle (; 384–322 BC) was an Ancient Greek philosophy, Ancient Greek philosopher and polymath. His writings cover a broad range of subjects spanning the natural sciences, philosophy, linguistics, economics, politics, psychology, a ...
until the 19th century, was of
spontaneous generation Spontaneous generation is a superseded scientific theory that held that living creatures could arise from non-living matter and that such processes were commonplace and regular. It was hypothesized that certain forms, such as fleas, could ...
. This held that "lower" animals such as insects were generated by decaying organic substances, and that life arose by chance. This was questioned from the 17th century, in works like
Thomas Browne Sir Thomas Browne ( "brown"; 19 October 160519 October 1682) was an English polymath and author of varied works which reveal his wide learning in diverse fields including science and medicine, religion and the esoteric. His writings display a d ...
's ''
Pseudodoxia Epidemica ''Pseudodoxia Epidemica: or, Enquiries into very many received tenents and commonly presumed truths'', also known simply as ''Pseudodoxia Epidemica'' or ''Vulgar Errors'', is a work by the English polymath Thomas Browne, challenging and refuti ...
''. In 1665,
Robert Hooke Robert Hooke (; 18 July 16353 March 1703) was an English polymath who was active as a physicist ("natural philosopher"), astronomer, geologist, meteorologist, and architect. He is credited as one of the first scientists to investigate living ...
published the first drawings of a
microorganism A microorganism, or microbe, is an organism of microscopic scale, microscopic size, which may exist in its unicellular organism, single-celled form or as a Colony (biology)#Microbial colonies, colony of cells. The possible existence of unseen ...
. In 1676,
Antonie van Leeuwenhoek Antonie Philips van Leeuwenhoek ( ; ; 24 October 1632 – 26 August 1723) was a Dutch microbiologist and microscopist in the Golden Age of Dutch art, science and technology. A largely self-taught man in science, he is commonly known as " ...
drew and described microorganisms, probably
protozoa Protozoa (: protozoan or protozoon; alternative plural: protozoans) are a polyphyletic group of single-celled eukaryotes, either free-living or parasitic, that feed on organic matter such as other microorganisms or organic debris. Historically ...
and
bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ...
. Van Leeuwenhoek disagreed with spontaneous generation, and by the 1680s convinced himself, using experiments ranging from sealed and open meat incubation and the close study of insect reproduction, that the theory was incorrect. In 1668
Francesco Redi Francesco Redi (18 February 1626 – 1 March 1697) was an Italians, Italian physician, naturalist, biologist, and poet. He is referred to as the "founder of experimental biology", and as the "father of modern parasitology". He was the first perso ...
showed that no
maggot A maggot is the larva of a fly (order Diptera); it is applied in particular to the larvae of Brachycera flies, such as houseflies, cheese flies, hoverflies, and blowflies, rather than larvae of the Nematocera, such as mosquitoes and cr ...
s appeared in meat when flies were prevented from laying eggs. By the middle of the 19th century, spontaneous generation was considered disproven.


Panspermia

Dating back to
Anaxagoras Anaxagoras (; , ''Anaxagóras'', 'lord of the assembly'; ) was a Pre-Socratic Greek philosopher. Born in Clazomenae at a time when Asia Minor was under the control of the Persian Empire, Anaxagoras came to Athens. In later life he was charged ...
in the 5th century BC,
panspermia Panspermia () is the hypothesis that life exists throughout the universe, distributed by space dust, meteoroids, asteroids, comets, and planetoids, as well as by spacecraft carrying unintended contamination by microorganisms,Forward planetary c ...
is the idea that
life Life, also known as biota, refers to matter that has biological processes, such as Cell signaling, signaling and self-sustaining processes. It is defined descriptively by the capacity for homeostasis, Structure#Biological, organisation, met ...
originated elsewhere in the
universe The universe is all of space and time and their contents. It comprises all of existence, any fundamental interaction, physical process and physical constant, and therefore all forms of matter and energy, and the structures they form, from s ...
and came to Earth. The modern version of panspermia holds that life may have been distributed to Earth by
meteoroids A meteoroid ( ) is a small rocky or metallic body in outer space. Meteoroids are distinguished as objects significantly smaller than ''asteroids'', ranging in size from grains to objects up to wide. Objects smaller than meteoroids are classifie ...
,
asteroids An asteroid is a minor planet—an object larger than a meteoroid that is neither a planet nor an identified comet—that orbits within the Solar System#Inner Solar System, inner Solar System or is co-orbital with Jupiter (Trojan asteroids). As ...
,
comets A comet is an icy, small Solar System body that warms and begins to release gases when passing close to the Sun, a process called outgassing. This produces an extended, gravitationally unbound atmosphere or coma surrounding the nucleus, an ...
or
planetoids According to the International Astronomical Union (IAU), a minor planet is an astronomical object in direct orbit around the Sun that is exclusively classified as neither a planet nor a comet. Before 2006, the IAU officially used the term ''mino ...
. This shifts the origin of life to another heavenly body. The advantage is that life is not required to have formed on each planet it occurs on, but in a more limited set of locations, and then spread about the
galaxy A galaxy is a Physical system, system of stars, stellar remnants, interstellar medium, interstellar gas, cosmic dust, dust, and dark matter bound together by gravity. The word is derived from the Ancient Greek, Greek ' (), literally 'milky', ...
to other star systems. There is some interest in the possibility that life originated on Mars and later transferred to Earth.


"A warm little pond": primordial soup

The idea that life originated from non-living matter in slow stages appeared in
Herbert Spencer Herbert Spencer (27 April 1820 – 8 December 1903) was an English polymath active as a philosopher, psychologist, biologist, sociologist, and anthropologist. Spencer originated the expression "survival of the fittest", which he coined in '' ...
's 1864–1867 book ''Principles of Biology'', and in
William Turner Thiselton-Dyer Sir William Turner Thiselton-Dyer (28 July 1843 – 23 December 1928) was a leading British botanist, and the third director of the Royal Botanic Gardens, Kew. Life and career Thiselton-Dyer was born in Westminster, London. He was a son of ...
's 1879 paper "On spontaneous generation and evolution". On 1 February 1871
Charles Darwin Charles Robert Darwin ( ; 12 February 1809 – 19 April 1882) was an English Natural history#Before 1900, naturalist, geologist, and biologist, widely known for his contributions to evolutionary biology. His proposition that all speci ...
wrote about these publications to
Joseph Hooker Joseph Hooker (November 13, 1814 – October 31, 1879) was an American Civil War general for the Union, chiefly remembered for his decisive defeat by Confederate General Robert E. Lee at the Battle of Chancellorsville in 1863. Hooker had serv ...
, and set out his own speculation that the original spark of life may have been in a "warm little pond, with all sorts of
ammonia Ammonia is an inorganic chemical compound of nitrogen and hydrogen with the chemical formula, formula . A Binary compounds of hydrogen, stable binary hydride and the simplest pnictogen hydride, ammonia is a colourless gas with a distinctive pu ...
and phosphoric
salts In chemistry, a salt or ionic compound is a chemical compound consisting of an assembly of positively charged ions ( cations) and negatively charged ions (anions), which results in a compound with no net electric charge (electrically neutral). ...
,—light, heat, electricity present, that a protein compound was chemically formed". Darwin explained that "at the present day such matter would be instantly devoured or absorbed, which would not have been the case before living creatures were formed."
Alexander Oparin Alexander Ivanovich Oparin (; – 21 April 1980) was a Soviet biochemist notable for his theories about the origin of life and for his book ''The Origin of Life''. He also studied the biochemistry of material processing by plants and enzyme ...
in 1924 and
J. B. S. Haldane John Burdon Sanderson Haldane (; 5 November 18921 December 1964), nicknamed "Jack" or "JBS", was a British-born scientist who later moved to India and acquired Indian citizenship. He worked in the fields of physiology, genetics, evolutionary ...
in 1929 proposed that the earliest cells slowly self-organized from a
primordial soup Primordial soup, also known as prebiotic soup and Haldane soup, is the hypothetical set of conditions present on the Earth around 3.7 to 4.0 billion years ago. It is an aspect of the heterotrophic theory (also known as the Oparin–Haldane hypothes ...
, the Oparin–Haldane hypothesis. Haldane suggested that the Earth's prebiotic oceans consisted of a "hot dilute soup" in which organic compounds could have formed.
J. D. Bernal John Desmond Bernal (; 10 May 1901 – 15 September 1971) was an Irish scientist who pioneered the use of X-ray crystallography in molecular biology. He published extensively on the history of science. In addition, Bernal wrote popular boo ...
showed that such mechanisms could form most of the necessary molecules for life from inorganic precursors. In 1967, he suggested three "stages": the origin of biological
monomer A monomer ( ; ''mono-'', "one" + '' -mer'', "part") is a molecule that can react together with other monomer molecules to form a larger polymer chain or two- or three-dimensional network in a process called polymerization. Classification Chemis ...
s; the origin of biological
polymer A polymer () is a chemical substance, substance or material that consists of very large molecules, or macromolecules, that are constituted by many repeat unit, repeating subunits derived from one or more species of monomers. Due to their br ...
s; and the evolution from molecules to cells.


Miller–Urey experiment

In 1952,
Stanley Miller Stanley Lloyd Miller (March 7, 1930 – May 20, 2007) was an American chemist who made important experiments concerning the origin of life Abiogenesis is the natural process by which life arises from abiotic component, non-living matter, ...
and
Harold Urey Harold Clayton Urey ( ; April 29, 1893 – January 5, 1981) was an American physical chemist whose pioneering work on isotopes earned him the Nobel Prize in Chemistry in 1934 for the discovery of deuterium. He played a significant role in the ...
carried out a chemical experiment to demonstrate how organic molecules could have formed spontaneously from inorganic precursors under
prebiotic conditions Prebiotic may refer to: * Prebiotic (chemistry), inorganic or organic chemistry in the natural environment before the advent of life on Earth * Prebiotic (nutrition), non-digestible food ingredients See also * Probiotic Probiotics are live ...
like those posited by the Oparin–Haldane hypothesis. It used a highly reducing (lacking oxygen) mixture of gases—
methane Methane ( , ) is a chemical compound with the chemical formula (one carbon atom bonded to four hydrogen atoms). It is a group-14 hydride, the simplest alkane, and the main constituent of natural gas. The abundance of methane on Earth makes ...
,
ammonia Ammonia is an inorganic chemical compound of nitrogen and hydrogen with the chemical formula, formula . A Binary compounds of hydrogen, stable binary hydride and the simplest pnictogen hydride, ammonia is a colourless gas with a distinctive pu ...
, and
hydrogen Hydrogen is a chemical element; it has chemical symbol, symbol H and atomic number 1. It is the lightest and abundance of the chemical elements, most abundant chemical element in the universe, constituting about 75% of all baryon, normal matter ...
, with
water vapor Water vapor, water vapour, or aqueous vapor is the gaseous phase of Properties of water, water. It is one Phase (matter), state of water within the hydrosphere. Water vapor can be produced from the evaporation or boiling of liquid water or from th ...
—to form organic monomers such as
amino acid Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although over 500 amino acids exist in nature, by far the most important are the 22 α-amino acids incorporated into proteins. Only these 22 a ...
s. Bernal said of the Miller–Urey experiment that "it is not enough to explain the formation of such molecules, what is necessary, is a physical-chemical explanation of the origins of these molecules that suggests the presence of suitable sources and sinks for free energy." However, current scientific consensus describes the primitive atmosphere as weakly reducing or neutral, diminishing the amount and variety of amino acids that could be produced. The addition of
iron Iron is a chemical element; it has symbol Fe () and atomic number 26. It is a metal that belongs to the first transition series and group 8 of the periodic table. It is, by mass, the most common element on Earth, forming much of Earth's o ...
and
carbonate A carbonate is a salt of carbonic acid, (), characterized by the presence of the carbonate ion, a polyatomic ion with the formula . The word "carbonate" may also refer to a carbonate ester, an organic compound containing the carbonate group ...
minerals, present in early oceans, produces a diverse array of amino acids. Later work has focused on two other potential reducing environments: outer space and deep-sea hydrothermal vents.


Producing a habitable Earth


Evolutionary history


Early universe with first stars

Soon after the
Big Bang The Big Bang is a physical theory that describes how the universe expanded from an initial state of high density and temperature. Various cosmological models based on the Big Bang concept explain a broad range of phenomena, including th ...
, roughly 14 Gya, the only chemical elements present in the universe were
hydrogen Hydrogen is a chemical element; it has chemical symbol, symbol H and atomic number 1. It is the lightest and abundance of the chemical elements, most abundant chemical element in the universe, constituting about 75% of all baryon, normal matter ...
,
helium Helium (from ) is a chemical element; it has chemical symbol, symbol He and atomic number 2. It is a colorless, odorless, non-toxic, inert gas, inert, monatomic gas and the first in the noble gas group in the periodic table. Its boiling point is ...
, and
lithium Lithium (from , , ) is a chemical element; it has chemical symbol, symbol Li and atomic number 3. It is a soft, silvery-white alkali metal. Under standard temperature and pressure, standard conditions, it is the least dense metal and the ...
, the three lightest atoms in the periodic table. These elements gradually accreted and began orbiting in disks of gas and dust. Gravitational accretion of material at the hot and dense centers of these
protoplanetary disk A protoplanetary disk is a rotating circumstellar disc of dense gas and dust surrounding a young newly formed star, a T Tauri star, or Herbig Ae/Be star. The protoplanetary disk may not be considered an accretion disk; while the two are sim ...
s formed stars by the fusion of hydrogen. Early stars were massive and short-lived, producing all the heavier elements by
stellar nucleosynthesis In astrophysics, stellar nucleosynthesis is the creation of chemical elements by nuclear fusion reactions within stars. Stellar nucleosynthesis has occurred since the original creation of hydrogen, helium and lithium during the Big Bang. As a ...
. Such element formation proceeds to its most stable element Iron- 56. Heavier elements were formed during supernovae at the end of a star's lifecycle.
Carbon Carbon () is a chemical element; it has chemical symbol, symbol C and atomic number 6. It is nonmetallic and tetravalence, tetravalent—meaning that its atoms are able to form up to four covalent bonds due to its valence shell exhibiting 4 ...
, currently the fourth most abundant element in the universe, was formed mainly in
white dwarf stars A white dwarf is a stellar core remnant composed mostly of electron-degenerate matter. A white dwarf is very dense: in an Earth sized volume, it packs a mass that is comparable to the Sun. No nuclear fusion takes place in a white dwarf; what ...
. As these stars reached the end of their lifecycles, they ejected heavier elements, including carbon and oxygen, throughout the universe. These allowed for the formation of rocky planets. According to the
nebular hypothesis The nebular hypothesis is the most widely accepted model in the field of cosmogony to explain the formation and evolution of the Solar System (as well as other planetary systems). It suggests the Solar System is formed from gas and dust orbiting t ...
, the
Solar System The Solar SystemCapitalization of the name varies. The International Astronomical Union, the authoritative body regarding astronomical nomenclature, specifies capitalizing the names of all individual astronomical objects but uses mixed "Sola ...
began to form 4.6 Gya with the
gravitational collapse Gravitational collapse is the contraction of an astronomical object due to the influence of its own gravity, which tends to draw matter inward toward the center of gravity. Gravitational collapse is a fundamental mechanism for structure formati ...
of part of a giant
molecular cloud A molecular cloud—sometimes called a stellar nursery if star formation is occurring within—is a type of interstellar cloud of which the density and size permit absorption nebulae, the formation of molecules (most commonly molecular hydrogen, ...
. Most of the collapsing mass collected in the center, forming the
Sun The Sun is the star at the centre of the Solar System. It is a massive, nearly perfect sphere of hot plasma, heated to incandescence by nuclear fusion reactions in its core, radiating the energy from its surface mainly as visible light a ...
, while the rest flattened into a
protoplanetary disk A protoplanetary disk is a rotating circumstellar disc of dense gas and dust surrounding a young newly formed star, a T Tauri star, or Herbig Ae/Be star. The protoplanetary disk may not be considered an accretion disk; while the two are sim ...
out of which the
planet A planet is a large, Hydrostatic equilibrium, rounded Astronomical object, astronomical body that is generally required to be in orbit around a star, stellar remnant, or brown dwarf, and is not one itself. The Solar System has eight planets b ...
s formed.


Emergence of Earth

The
age of the Earth The age of Earth is estimated to be 4.54 ± 0.05 billion years. This age may represent the age of Earth's accretion (astrophysics), accretion, or Internal structure of Earth, core formation, or of the material from which Earth formed. This dating ...
is 4.54 Gya as found by radiometric dating of calcium-aluminium-rich inclusions in
carbonaceous chrondrite Carbonaceous refers to something relating to, containing, or composed of carbon. It is a descriptor used for the attribute of any substance rich in carbon. Particularly, ''carbonaceous hydrocarbons'' are very unsaturated, high-molecular-weight hyd ...
meteorites, the oldest material in the Solar System. Earth, during the
Hadean The Hadean ( ) is the first and oldest of the four geologic eons of Earth's history, starting with the planet's formation about 4.6  billion years ago (estimated 4567.30 ± 0.16 million years ago set by the age of the oldest solid material ...
eon (from its formation until 4.031 Gya,) was at first inhospitable to life. During its formation, the Earth lost much of its initial mass, and so lacked the
gravity In physics, gravity (), also known as gravitation or a gravitational interaction, is a fundamental interaction, a mutual attraction between all massive particles. On Earth, gravity takes a slightly different meaning: the observed force b ...
to hold molecular hydrogen and the bulk of the original inert gases. Soon after initial accretion of Earth at 4.48 Gya, its collision with
Theia Theia (; , also rendered Thea or Thia), also called Euryphaessa (, "wide-shining"), is one of the twelve Titans, the children of the earth goddess Gaia and the sky god Uranus in Greek mythology. She is the Greek goddess of sight and vision, an ...
, a hypothesised impactor, is thought to have created the ejected debris that eventually formed the Moon. This impact removed the Earth's primary atmosphere, leaving behind clouds of viscous silicates and carbon dioxide. This unstable atmosphere was short-lived, soon condensing to form the bulk silicate Earth, leaving behind an atmosphere largely consisting of water vapor,
nitrogen Nitrogen is a chemical element; it has Symbol (chemistry), symbol N and atomic number 7. Nitrogen is a Nonmetal (chemistry), nonmetal and the lightest member of pnictogen, group 15 of the periodic table, often called the Pnictogen, pnictogens. ...
, and
carbon dioxide Carbon dioxide is a chemical compound with the chemical formula . It is made up of molecules that each have one carbon atom covalent bond, covalently double bonded to two oxygen atoms. It is found in a gas state at room temperature and at norma ...
, with smaller amounts of
carbon monoxide Carbon monoxide (chemical formula CO) is a poisonous, flammable gas that is colorless, odorless, tasteless, and slightly less dense than air. Carbon monoxide consists of one carbon atom and one oxygen atom connected by a triple bond. It is the si ...
, hydrogen, and
sulfur Sulfur ( American spelling and the preferred IUPAC name) or sulphur ( Commonwealth spelling) is a chemical element; it has symbol S and atomic number 16. It is abundant, multivalent and nonmetallic. Under normal conditions, sulfur atoms ...
compounds. The solution of carbon dioxide in water is thought to have made the seas slightly
acid An acid is a molecule or ion capable of either donating a proton (i.e. Hydron, hydrogen cation, H+), known as a Brønsted–Lowry acid–base theory, Brønsted–Lowry acid, or forming a covalent bond with an electron pair, known as a Lewis ...
ic, with a pH of about 5.5. Condensation to form liquid
oceans The ocean is the body of salt water that covers approximately 70.8% of Earth. The ocean is conventionally divided into large bodies of water, which are also referred to as ''oceans'' (the Pacific, Atlantic, Indian, Antarctic/Southern, and ...
is theorised to have occurred as early as the Moon-forming impact. This scenario is supported by the dating of 4.404 Gya
zircon Zircon () is a mineral belonging to the group of nesosilicates and is a source of the metal zirconium. Its chemical name is zirconium(IV) silicate, and its corresponding chemical formula is Zr SiO4. An empirical formula showing some of th ...
crystals with high ''δ''18O values from metamorphosed
quartzite Quartzite is a hard, non- foliated metamorphic rock that was originally pure quartz sandstone.Essentials of Geology, 3rd Edition, Stephen Marshak, p 182 Sandstone is converted into quartzite through heating and pressure usually related to tecton ...
of Mount Narryer in Western Australia. The Hadean atmosphere has been characterized as a "gigantic, productive outdoor chemical laboratory," similar to volcanic gases today which still support some abiotic chemistry. Despite the likely increased volcanism from early plate tectonics, the Earth may have been a predominantly water world between 4.4 and 4.3 Gya. It is debated whether crust was exposed above this ocean. Immediately after the Moon-forming impact, Earth likely had little if any continental crust, a turbulent atmosphere, and a
hydrosphere The hydrosphere () is the combined mass of water found on, under, and above the Planetary surface, surface of a planet, minor planet, or natural satellite. Although Earth's hydrosphere has been around for about 4 billion years, it continues to ch ...
subject to intense
ultraviolet Ultraviolet radiation, also known as simply UV, is electromagnetic radiation of wavelengths of 10–400 nanometers, shorter than that of visible light, but longer than X-rays. UV radiation is present in sunlight and constitutes about 10% of ...
light from a T Tauri stage Sun. It was also affected by
cosmic radiation Cosmic rays or astroparticles are high-energy particles or clusters of particles (primarily represented by protons or atomic nuclei) that move through space at nearly the speed of light. They originate from the Sun, from outside of the Sol ...
, and continued asteroid and
comet A comet is an icy, small Solar System body that warms and begins to release gases when passing close to the Sun, a process called outgassing. This produces an extended, gravitationally unbound atmosphere or Coma (cometary), coma surrounding ...
impacts. The
Late Heavy Bombardment The Late Heavy Bombardment (LHB), or lunar cataclysm, is a hypothesized astronomical event thought to have occurred approximately 4.1 to 3.8 billion years (Ga) ago, at a time corresponding to the Neohadean and Eoarchean eras on Earth. According ...
hypothesis posits that a period of intense impact occurred at 4.1 to 3.8 Gya during the Hadean and early
Archean The Archean ( , also spelled Archaean or Archæan), in older sources sometimes called the Archaeozoic, is the second of the four geologic eons of Earth's history of Earth, history, preceded by the Hadean Eon and followed by the Proterozoic and t ...
eons. Originally it was thought that the Late Heavy Bombardment was a single cataclysmic impact event occurring at 3.9 Gya; this would have had the potential to sterilise Earth by volatilising liquid oceans and blocking sunlight needed for photosynthesis, delaying the earliest possible emergence of life. More recent research questioned the intensity of the Late Heavy Bombardment and its potential for sterilisation. If it was not one giant impact but a period of raised impact rate, it would have had much less destructive power. The 3.9 Gya date arose from dating of Apollo mission sample returns collected mostly near the
Imbrium Basin Mare Imbrium (Latin ''imbrium'', the "Sea of Showers" or "Sea of Rains") is a vast lava plain within the Imbrium Basin on the Moon and is one of the larger craters in the Solar System. The Imbrium Basin formed from the collision of a pro ...
, biasing the age of recorded impacts. Impact modelling of the lunar surface reveals that rather than a cataclysmic event at 3.9 Gya, multiple small-scale, short-lived periods of bombardment likely occurred. Terrestrial data backs this idea by showing multiple periods of ejecta in the rock record both before and after the 3.9 Gya marker, suggesting that the early Earth was subject to continuous impacts with less impact on extinction. If life evolved in the ocean at depths of more than ten meters, it would have been shielded both from late impacts and the then high levels of ultraviolet radiation from the sun. Geothermically heated oceanic crust could have yielded far more organic compounds through deep
hydrothermal vent Hydrothermal vents are fissures on the seabed from which geothermally heated water discharges. They are commonly found near volcanically active places, areas where tectonic plates are moving apart at mid-ocean ridges, ocean basins, and hot ...
s than the
Miller–Urey experiment The Miller–Urey experiment, or Miller experiment, was an experiment in chemical synthesis carried out in 1952 that simulated the conditions thought at the time to be present in the Prebiotic atmosphere, atmosphere of the early, prebiotic Earth ...
s indicated. The available energy is maximized at 100–150 °C, the temperatures at which
hyperthermophilic A hyperthermophile is an organism that thrives in extremely hot environments—from 60 °C (140 °F) upward. An optimal temperature for the existence of hyperthermophiles is often above 80 °C (176 °F). Hyperthermophiles are of ...
bacteria and thermoacidophilic
archaea Archaea ( ) is a Domain (biology), domain of organisms. Traditionally, Archaea only included its Prokaryote, prokaryotic members, but this has since been found to be paraphyletic, as eukaryotes are known to have evolved from archaea. Even thou ...
live.


Earliest evidence of life

Life most likely emerged on Earth between 3.48 and 4.32 Gya. Minimum age estimates are based on evidence from the
geologic record The geologic record in stratigraphy, paleontology and other natural sciences refers to the entirety of the layers of rock strata. That is, deposits laid down by volcanism or by deposition of sediment derived from weathering detritus (clays, sa ...
. In 2017, the earliest physical evidence of life was reported to consist of
microbialite Microbialite is a benthic sedimentary deposit made of carbonate mud (particle diameter less than 5 μm) that is formed with the mediation of microbes. The constituent carbonate mud is a type of '' automicrite'' (or ''authigenic carbonate mu ...
s in the
Nuvvuagittuq Greenstone Belt The Nuvvuagittuq Greenstone Belt (NGB; Inuktitut: ) is a sequence of metamorphosed mafic to ultramafic volcanic and associated sedimentary rocks (a greenstone belt) located on the eastern shore of Hudson Bay, 40 km southeast of Inukjuak, ...
of Northern Quebec, in
banded iron formation Banded iron formations (BIFs; also called banded ironstone formations) are distinctive units of sedimentary rock consisting of alternating layers of iron oxides and iron-poor chert. They can be up to several hundred meters in thickness and e ...
rocks at least 3.77 and possibly as old as 4.32 Gya. The micro-organisms could have lived within hydrothermal vent precipitates, soon after the 4.4 Gya formation of oceans during the Hadean. The microbes resemble modern hydrothermal vent bacteria, supporting the view that abiogenesis began in such an environment. However, later research disputed this interpretation of the data, stating that the observations may be better explained by abiotic processes in silica-rich waters, "chemical gardens," circulating hydrothermal fluids, or volcanic ejecta. Biogenic
graphite Graphite () is a Crystallinity, crystalline allotrope (form) of the element carbon. It consists of many stacked Layered materials, layers of graphene, typically in excess of hundreds of layers. Graphite occurs naturally and is the most stable ...
has been found in 3.7 Gya metasedimentary rocks from southwestern
Greenland Greenland is an autonomous territory in the Danish Realm, Kingdom of Denmark. It is by far the largest geographically of three constituent parts of the kingdom; the other two are metropolitan Denmark and the Faroe Islands. Citizens of Greenlan ...
and in
microbial mat A microbial mat is a multi-layered sheet or biofilm of microbial colonies, composed of mainly bacteria and/or archaea. Microbial mats grow at interfaces between different types of material, mostly on submerged or moist surfaces, but a few surviv ...
fossils from 3.49 Gya
chert Chert () is a hard, fine-grained sedimentary rock composed of microcrystalline or cryptocrystalline quartz, the mineral form of silicon dioxide (SiO2). Chert is characteristically of biological origin, but may also occur inorganically as a prec ...
s in the
Pilbara The Pilbara () is a large, dry, sparsely populated regions of Western Australia, region in the north of Western Australia. It is known for its Indigenous Australians, Aboriginal people; wealth disparity; its ancient landscapes; the prevailing r ...
region of
Western Australia Western Australia (WA) is the westernmost state of Australia. It is bounded by the Indian Ocean to the north and west, the Southern Ocean to the south, the Northern Territory to the north-east, and South Australia to the south-east. Western Aust ...
. Evidence of early life in rocks from
Akilia {{Infobox islands , name = Akilia Island , native_name = , native_name_link = , native_name_lang = , sobriquet = , image_name ...
Island, near the Isua supracrustal belt in southwestern Greenland, dating to 3.7 Gya, have shown biogenic
carbon isotope Carbon (6C) has 14 known isotopes, from to as well as , of which only and are stable. The longest-lived radioisotope is , with a half-life of years. This is also the only carbon radioisotope found in nature, as trace quantities are formed ...
s. In other parts of the Isua supracrustal belt, graphite inclusions trapped within
garnet Garnets () are a group of silicate minerals that have been used since the Bronze Age as gemstones and abrasives. Garnet minerals, while sharing similar physical and crystallographic properties, exhibit a wide range of chemical compositions, de ...
crystals are connected to the other elements of life: oxygen, nitrogen, and possibly phosphorus in the form of
phosphate Phosphates are the naturally occurring form of the element phosphorus. In chemistry, a phosphate is an anion, salt, functional group or ester derived from a phosphoric acid. It most commonly means orthophosphate, a derivative of orthop ...
, providing further evidence for life 3.7 Gya. In the
Pilbara The Pilbara () is a large, dry, sparsely populated regions of Western Australia, region in the north of Western Australia. It is known for its Indigenous Australians, Aboriginal people; wealth disparity; its ancient landscapes; the prevailing r ...
region of Western Australia, compelling evidence of early life was found in
pyrite The mineral pyrite ( ), or iron pyrite, also known as fool's gold, is an iron sulfide with the chemical formula Fe S2 (iron (II) disulfide). Pyrite is the most abundant sulfide mineral. Pyrite's metallic luster and pale brass-yellow hue ...
-bearing sandstone in a fossilized beach, with rounded tubular cells that oxidized sulfur by photosynthesis in the absence of oxygen. Carbon isotope ratios on graphite inclusions from the Jack Hills zircons suggest that life could have existed on Earth from 4.1 Gya. The Pilbara region of Western Australia contains the
Dresser Formation The Dresser Formation is a Paleoarchean geologic formation that outcrops as a generally circular ring of hills in the North Pole Dome area of the East Pilbara Terrane of the Pilbara Craton of Western Australia. This formation is one of many fo ...
with rocks 3.48 Gya, including layered structures called
stromatolite Stromatolites ( ) or stromatoliths () are layered Sedimentary rock, sedimentary formation of rocks, formations (microbialite) that are created mainly by Photosynthesis, photosynthetic microorganisms such as cyanobacteria, sulfate-reducing micr ...
s. Their modern counterparts are created by photosynthetic micro-organisms including
cyanobacteria Cyanobacteria ( ) are a group of autotrophic gram-negative bacteria that can obtain biological energy via oxygenic photosynthesis. The name "cyanobacteria" () refers to their bluish green (cyan) color, which forms the basis of cyanobacteri ...
. These lie within undeformed hydrothermal-sedimentary strata; their texture indicates a biogenic origin. Parts of the Dresser formation preserve
hot spring A hot spring, hydrothermal spring, or geothermal spring is a Spring (hydrology), spring produced by the emergence of Geothermal activity, geothermally heated groundwater onto the surface of the Earth. The groundwater is heated either by shallow ...
s on land, but other regions seem to have been shallow seas. A molecular clock analysis suggests the LUCA emerged prior to 3.9 Gya.


Producing molecules: prebiotic synthesis

All
chemical element A chemical element is a chemical substance whose atoms all have the same number of protons. The number of protons is called the atomic number of that element. For example, oxygen has an atomic number of 8: each oxygen atom has 8 protons in its ...
s derive from stellar nucleosynthesis except for hydrogen and some helium and lithium. Basic chemical ingredients of life – the carbon-hydrogen molecule (CH), the carbon-hydrogen positive ion (CH+) and the carbon ion (C+) – can be produced by
ultraviolet light Ultraviolet radiation, also known as simply UV, is electromagnetic radiation of wavelengths of 10–400 nanometers, shorter than that of visible light, but longer than X-rays. UV radiation is present in sunlight and constitutes about 10% of th ...
from stars. Complex molecules, including organic molecules, form naturally both in space and on planets. Organic molecules on the early Earth could have had either terrestrial origins, with organic molecule synthesis driven by impact shocks or by other energy sources, such as ultraviolet light,
redox Redox ( , , reduction–oxidation or oxidation–reduction) is a type of chemical reaction in which the oxidation states of the reactants change. Oxidation is the loss of electrons or an increase in the oxidation state, while reduction is t ...
coupling, or electrical discharges; or extraterrestrial origins (
pseudo-panspermia Pseudo-panspermia (sometimes called soft panspermia, molecular panspermia or quasi-panspermia) is a well-supported hypothesis for a stage in the origin of life. The theory first asserts that many of the small organic molecules used for life origin ...
), with organic molecules formed in interstellar dust clouds raining down on to the planet.


Observed extraterrestrial organic molecules

An organic compound is a chemical whose molecules contain carbon. Carbon is abundant in the Sun, stars, comets, and in the
atmosphere An atmosphere () is a layer of gases that envelop an astronomical object, held in place by the gravity of the object. A planet retains an atmosphere when the gravity is great and the temperature of the atmosphere is low. A stellar atmosph ...
s of most planets of the Solar System. Organic compounds are relatively common in space, formed by "factories of complex molecular synthesis" which occur in molecular clouds and
circumstellar envelope A circumstellar envelope (CSE) is a part of a star that has a roughly spherical shape and is not gravitationally bound to the star core. Usually circumstellar envelopes are formed from the dense stellar wind, or they are present before the formati ...
s, and chemically evolve after reactions are initiated mostly by
ionizing radiation Ionizing (ionising) radiation, including Radioactive decay, nuclear radiation, consists of subatomic particles or electromagnetic waves that have enough energy per individual photon or particle to ionization, ionize atoms or molecules by detaching ...
.
Purine Purine is a heterocyclic aromatic organic compound that consists of two rings (pyrimidine and imidazole) fused together. It is water-soluble. Purine also gives its name to the wider class of molecules, purines, which include substituted puri ...
and
pyrimidine Pyrimidine (; ) is an aromatic, heterocyclic, organic compound similar to pyridine (). One of the three diazines (six-membered heterocyclics with two nitrogen atoms in the ring), it has nitrogen atoms at positions 1 and 3 in the ring. The oth ...
nucleobases including
guanine Guanine () (symbol G or Gua) is one of the four main nucleotide bases found in the nucleic acids DNA and RNA, the others being adenine, cytosine, and thymine ( uracil in RNA). In DNA, guanine is paired with cytosine. The guanine nucleoside ...
,
adenine Adenine (, ) (nucleoside#List of nucleosides and corresponding nucleobases, symbol A or Ade) is a purine nucleotide base that is found in DNA, RNA, and Adenosine triphosphate, ATP. Usually a white crystalline subtance. The shape of adenine is ...
,
cytosine Cytosine () (symbol C or Cyt) is one of the four nucleotide bases found in DNA and RNA, along with adenine, guanine, and thymine ( uracil in RNA). It is a pyrimidine derivative, with a heterocyclic aromatic ring and two substituents attac ...
,
uracil Uracil () (nucleoside#List of nucleosides and corresponding nucleobases, symbol U or Ura) is one of the four nucleotide bases in the nucleic acid RNA. The others are adenine (A), cytosine (C), and guanine (G). In RNA, uracil binds to adenine via ...
, and
thymine Thymine () (symbol T or Thy) is one of the four nucleotide bases in the nucleic acid of DNA that are represented by the letters G–C–A–T. The others are adenine, guanine, and cytosine. Thymine is also known as 5-methyluracil, a pyrimidine ...
have been found in
meteorite A meteorite is a rock (geology), rock that originated in outer space and has fallen to the surface of a planet or Natural satellite, moon. When the original object enters the atmosphere, various factors such as friction, pressure, and chemical ...
s. These could have provided the materials for DNA and
RNA Ribonucleic acid (RNA) is a polymeric molecule that is essential for most biological functions, either by performing the function itself (non-coding RNA) or by forming a template for the production of proteins (messenger RNA). RNA and deoxyrib ...
to form on the
early Earth Early Earth also known as Proto-Earth is loosely defined as Earth in its first one billion years, or gigayear (Ga, 109 y), from its initial formation in the young Solar System at about 4.55 Ga to some time in the Archean eon in approximately 3.5 Ga ...
. The amino acid
glycine Glycine (symbol Gly or G; ) is an amino acid that has a single hydrogen atom as its side chain. It is the simplest stable amino acid. Glycine is one of the proteinogenic amino acids. It is encoded by all the codons starting with GG (G ...
was found in material ejected from comet Wild 2; it had earlier been detected in meteorites. Comets are encrusted with dark material, thought to be a
tar Tar is a dark brown or black viscous liquid of hydrocarbons and free carbon, obtained from a wide variety of organic materials through destructive distillation. Tar can be produced from coal, wood, petroleum, or peat. "a dark brown or black b ...
-like organic substance formed from simple carbon compounds under ionizing radiation. A rain of material from comets could have brought such complex organic molecules to Earth. It is estimated that during the Late Heavy Bombardment, meteorites may have delivered up to five million tons of organic prebiotic elements to Earth per year. Currently 40,000 tons of cosmic dust falls to Earth each year.


Polycyclic aromatic hydrocarbons

Polycyclic aromatic hydrocarbons (PAH) are the most common and abundant polyatomic molecules in the observable universe, and are a major store of carbon. They seem to have formed shortly after the Big Bang, and are associated with star formation, new stars and exoplanets. They are a likely constituent of Earth's primordial sea. PAHs have been detected in nebulae, and in the interstellar medium, in comets, and in meteorites. A star, HH 46-IR, resembling the sun early in its life, is surrounded by a disk of material which contains molecules including cyanide compounds, hydrocarbons, and carbon monoxide. PAHs in the interstellar medium can be transformed through hydrogenation, oxygenate, oxygenation, and hydroxylation to more complex organic compounds used in living cells.


Nucleobases and nucleotides

Organic compounds introduced on Earth by cosmic dust, interstellar dust particles can help to form complex molecules, thanks to their peculiar catalysis, surface-catalytic activities. "Paper presented at the Symposium 'Astrochemistry: molecules in space and time' (Rome, 4–5 November 2010), sponsored by Fondazione 'Guido Donegani', Accademia Nazionale dei Lincei." The RNA component uracil and related molecules, including xanthine, in the Murchison meteorite were likely formed extraterrestrially, as suggested by studies of 12C/13C natural abundance, isotopic ratios. NASA studies of meteorites suggest that all four DNA nucleobases (adenine, guanine and related organic molecules) have been formed in outer space. The cosmic dust permeating the universe contains complex organics ("amorphous organic solids with a mixed aromaticity, aromatic–aliphatic compound, aliphatic structure") that could be created rapidly by stars. Glycolaldehyde, a sugar molecule and RNA precursor, has been detected in regions of space including around protostars and on meteorites.


Laboratory synthesis

As early as the 1860s, experiments demonstrated that biologically relevant molecules can be produced from interaction of simple carbon sources with abundant inorganic catalysts. The spontaneous formation of complex polymers from abiotically generated monomers under the conditions posited by the "soup" theory is not straightforward. Besides the necessary basic organic monomers, compounds that would have prohibited the formation of polymers were also formed in high concentration during the
Miller–Urey experiment The Miller–Urey experiment, or Miller experiment, was an experiment in chemical synthesis carried out in 1952 that simulated the conditions thought at the time to be present in the Prebiotic atmosphere, atmosphere of the early, prebiotic Earth ...
and Joan Oró experiments. Biology uses essentially 20 amino acids for its coded protein enzymes, representing a very small subset of the structurally possible products. Since life tends to use whatever is available, an explanation is needed for why the set used is so small. Formamide is attractive as a medium that potentially provided a source of amino acid derivatives from simple aldehyde and nitrile feedstocks.


Sugars

Alexander Butlerov showed in 1861 that the formose reaction created sugars including tetroses, pentoses, and hexoses when formaldehyde is heated under basic conditions with divalent metal ions like calcium. R. Breslow proposed that the reaction was autocatalytic in 1959.


Nucleobases

Nucleobases, such as guanine and adenine, can be synthesized from simple carbon and nitrogen sources, such as hydrogen cyanide (HCN) and ammonia. Formamide produces all four ribonucleotides when warmed with terrestrial minerals. It is ubiquitous, produced by the reaction of water and HCN. It can be concentrated by the evaporation of water. HCN is poisonous only to aerobic organisms, which did not yet exist. It can contribute to chemical processes such as the synthesis of the amino acid glycine. DNA and RNA components including uracil, cytosine and thymine can be synthesized under outer space conditions, using starting chemicals such as pyrimidine found in meteorites. Pyrimidine may have been formed in red giant stars or in interstellar dust and gas clouds. All four RNA-bases may be synthesized from formamide in high-energy density events like extraterrestrial impacts. Several ribonucleotides for RNA formation have been synthesized in a laboratory environment which replicates Prebiotic world, prebiotic conditions via Autocatalysis, autocatalytic formose reaction. Other pathways for synthesizing bases from inorganic materials have been reported. Freezing temperatures assist the synthesis of purines, by concentrating key precursors such as HCN. However, while adenine and guanine require freezing conditions, cytosine and uracil may require boiling temperatures. Seven amino acids and eleven types of nucleobases formed in ice when ammonia and cyanide were left in a freezer for 25 years. S-triazines (alternative nucleobases), pyrimidines including cytosine and uracil, and adenine can be synthesized by subjecting a urea solution to freeze-thaw cycles under a reductive atmosphere with spark discharges. The unusual speed of these low-temperature reactions is due to Eutectic system, eutectic freezing, which crowds impurities in microscopic pockets of liquid within the ice.


Peptides

Prebiotic peptide synthesis could have occurred by several routes. Some center on high temperature/concentration conditions in which condensation becomes energetically favorable, while others use plausible prebiotic condensing agents. Experimental evidence for the formation of peptides in uniquely concentrated environments is bolstered by work suggesting that wet-dry cycles and the presence of specific salts can greatly increase spontaneous condensation of glycine into poly-glycine chains. Other work suggests that while mineral surfaces, such as those of pyrite, calcite, and rutile catalyze peptide condensation, they also catalyze their hydrolysis. The authors suggest that additional chemical activation or coupling would be necessary to produce peptides at sufficient concentrations. Thus, mineral surface catalysis, while important, is not sufficient alone for peptide synthesis. Many prebiotically plausible condensing/activating agents have been identified, including the following: cyanamide, dicyanamide, dicyandiamide, diaminomaleonitrile, urea, trimetaphosphate, NaCl, CuCl2, (Ni,Fe)S, CO, carbonyl sulfide (COS), carbon disulfide (CS2), SO2, and diammonium phosphate (DAP). A 2024 experiment used a sapphire substrate with a web of thin cracks under a heat flow, mimicking Hydrothermal vent, deep-ocean vents, to concentrate prebiotically-relevant building blocks from a dilute mixture by up to three orders of magnitude. This could help to create biopolymers such as peptides. A similar role has been suggested for clays. The prebiotic synthesis of peptides from simpler molecules such as CO, NH3 and C, skipping the step of amino acid formation, is also very efficient.


Producing protocells

The largest unanswered question in evolution is how simple protocells first arose and differed in reproductive contribution to the following generation, thus initiating evolution. The Gard model, lipid world theory postulates that the first self-replicating object was
lipid Lipids are a broad group of organic compounds which include fats, waxes, sterols, fat-soluble vitamins (such as vitamins A, D, E and K), monoglycerides, diglycerides, phospholipids, and others. The functions of lipids include storing ...
-like. Phospholipids form lipid bilayers (as in cell membranes) in water while under agitation. These molecules were not present on early Earth, but other membrane-forming amphiphile, amphiphilic long-chain molecules were. These bodies may expand by insertion of additional lipids, and may spontaneously split into two offspring of similar size and composition. Lipid bodies may have provided sheltering envelopes for information storage, allowing the evolution of information-storing polymers like RNA. Only one or two types of vesicle-forming amphiphiles have been studied. There is an enormous number of possible arrangements of lipid bilayer membranes, and those with the best reproductive characteristics would have converged toward a hypercycle reaction, a positive feedback composed of two mutual catalysts represented by a membrane site and a specific compound trapped in the vesicle. Such site/compound pairs are transmissible to the daughter vesicles, leading to the emergence of distinct lineage (evolution), lineages of vesicles, subject to natural selection. A protocell is a self-organized, self-ordered, spherical collection of lipids proposed as a stepping-stone to life. A functional protocell has (as of 2014) not yet been achieved in a laboratory setting. Self-assembled vesicle (biology and chemistry), vesicles are essential components of primitive cells. The theory of classical irreversible thermodynamics treats self-assembly under a generalized chemical potential within the framework of dissipative systems. The second law of thermodynamics requires that overall entropy increases, yet life is distinguished by its great degree of organization. Therefore, a boundary is needed to separate ordered metabolism, life processes from chaotic non-living matter. Irene Chen and Jack W. Szostak suggest that elementary protocells can give rise to cellular behaviors including primitive forms of differential reproduction, competition, and energy storage. Competition for membrane molecules would favor stabilized membranes, suggesting a selective advantage for cross-linked fatty acids and even modern phospholipids. Such micro-encapsulation would allow for metabolism within the membrane and the exchange of small molecules, while retaining large biomolecules inside. Such a membrane is needed for a cell to create its own electrochemical gradient. Fatty acid vesicles in conditions relevant to alkaline hydrothermal vents can be stabilized by isoprenoids which are synthesized by the formose reaction; the advantages and disadvantages of isoprenoids incorporated within the lipid bilayer in different microenvironments might have led to the divergence of the membranes of archaea and bacteria. Vesicles can undergo an evolutionary process under pressure cycling conditions. Simulating the systemic environment in tectonic Fault (geology), fault zones within the Earth's crust, pressure cycling leads to the periodic formation of vesicles. Under the same conditions, random peptide chains are formed and selected for their ability to integrate into the vesicle membrane. A further selection of the vesicles for stability potentially leads to functional peptide structures, increasing the survival rate of the vesicles.


Producing biology


Energy and entropy

Life requires a loss of entropy, or disorder, as molecules organize themselves into living matter. At the same time, the emergence of life is associated with the formation of structures beyond a certain threshold of complexity. The emergence of life with increasing order and complexity does not contradict the second law of thermodynamics, which states that overall entropy never decreases, since a living organism creates order in some places (e.g. its living body) at the expense of an increase of entropy elsewhere (e.g. heat and waste production). Multiple sources of energy were available for chemical reactions on the early Earth. Heat from geothermal energy, geothermal processes is a standard energy source for chemistry. Other examples include sunlight, lightning, atmospheric entries of micro-meteorites, and implosion of bubbles in sea and ocean waves. This has been confirmed by experiments and simulations. Unfavorable reactions can be driven by highly favorable ones, as in the case of iron-sulfur chemistry. For example, this was probably important for carbon fixation. Carbon fixation by reaction of CO2 with H2S via iron-sulfur chemistry is favorable, and occurs at neutral pH and 100 °C. Iron-sulfur surfaces, which are abundant near hydrothermal vents, can drive the production of small amounts of amino acids and other biomolecules.


Chemiosmosis

In 1961, Peter D. Mitchell, Peter Mitchell proposed
chemiosmosis Chemiosmosis is the movement of ions across a semipermeable membrane bound structure, down their electrochemical gradient. An important example is the formation of adenosine triphosphate, adenosine triphosphate (ATP) by the movement of hydrogen ion ...
as a cell's primary system of energy conversion. The mechanism, now ubiquitous in living cells, powers energy conversion in micro-organisms and in the mitochondria of eukaryotes, making it a likely candidate for early life. Mitochondria produce adenosine triphosphate (ATP), the energy currency of the cell used to drive cellular processes such as chemical syntheses. The mechanism of ATP synthesis involves a closed membrane in which the ATP synthase enzyme is embedded. The energy required to release strongly bound ATP has its origin in protons that move across the membrane. In modern cells, those proton movements are caused by the pumping of ions across the membrane, maintaining an electrochemical gradient. In the first organisms, the gradient could have been provided by the difference in chemical composition between the flow from a hydrothermal vent and the surrounding seawater, or perhaps meteoric quinones that were conducive to the development of chemiosmotic energy across lipid membranes if at a terrestrial origin.


PAH world hypothesis

The PAH world hypothesis is a speculative
hypothesis A hypothesis (: hypotheses) is a proposed explanation for a phenomenon. A scientific hypothesis must be based on observations and make a testable and reproducible prediction about reality, in a process beginning with an educated guess o ...
that proposes that polycyclic aromatic hydrocarbons (PAHs), known to be abundant in the
universe The universe is all of space and time and their contents. It comprises all of existence, any fundamental interaction, physical process and physical constant, and therefore all forms of matter and energy, and the structures they form, from s ...
, including in comets, and assumed to be abundant in the Primordial soup#"Primordial soup" theory, primordial soup of the early Earth, played a major role in the origin of life by mediating the synthesis of
RNA Ribonucleic acid (RNA) is a polymeric molecule that is essential for most biological functions, either by performing the function itself (non-coding RNA) or by forming a template for the production of proteins (messenger RNA). RNA and deoxyrib ...
molecules, leading into the
RNA world The RNA world is a hypothetical stage in the evolutionary history of life on Earth in which self-replicating RNA molecules proliferated before the evolution of DNA and proteins. The term also refers to the hypothesis that posits the existence ...
. However, as yet, the hypothesis is untested.


The RNA world

The
RNA world The RNA world is a hypothetical stage in the evolutionary history of life on Earth in which self-replicating RNA molecules proliferated before the evolution of DNA and proteins. The term also refers to the hypothesis that posits the existence ...
hypothesis describes an early Earth with self-replicating and catalytic RNA but no DNA or proteins. Many researchers concur that an RNA world must have preceded modern DNA-based life. However, RNA-based life may not have been the first to exist. Another model echoes Darwin's "warm little pond" with cycles of wetting and drying. Some have proposed a timeline of more than 30 potential significant chemical events between pre-RNA world to near but before LUCA, just involving RNA. The timeline does not include metabolism-related events such as origins of ATP, glycolysis, the Krebs cycle, and the electron transport chain. RNA is central to the translation process. Small RNAs can catalyze all the chemical groups and information transfers required for life. RNA both expresses and maintains genetic information in modern organisms; and the chemical components of RNA are easily synthesized under conditions that approximate the early Earth. The structure of the
ribosome Ribosomes () are molecular machine, macromolecular machines, found within all cell (biology), cells, that perform Translation (biology), biological protein synthesis (messenger RNA translation). Ribosomes link amino acids together in the order s ...
has been called the "smoking gun", with a central core of RNA and no amino acid side chains within 18 Angstrom, Å of the active site that catalyzes peptide bond formation. The concept of the RNA world was proposed in 1962 by Alexander Rich, and the term was coined by Walter Gilbert in 1986. Initially it was hard to explain abiotic synthesis of the nucleotides cytosine and uracil. Subsequent research has shown possible routes of synthesis; for example, formamide produces all four ribonucleotides and other biological molecules when warmed in the presence of terrestrial minerals. RNA-dependent RNA polymerase, RNA replicase can function as both code and catalyst for further RNA replication, i.e. it can be autocatalytic. Jack Szostak has shown that certain catalytic RNAs can link smaller RNA sequences together, enabling self-replication. RNA replication systems, which include two ribozymes that catalyze each other's synthesis, had a doubling time of about one hour, and were subject to natural selection. If such conditions were present on early Earth, then natural selection would favor the proliferation of such autocatalytic sets, to which further functionalities could be added. Self-assembly of RNA may occur spontaneously in hydrothermal vents. A preliminary form of tRNA could have assembled into such a replicator molecule. When such an
RNA Ribonucleic acid (RNA) is a polymeric molecule that is essential for most biological functions, either by performing the function itself (non-coding RNA) or by forming a template for the production of proteins (messenger RNA). RNA and deoxyrib ...
molecule began to replicate, it may it may have been capable of the three mechanisms of Darwinian selection: heritability, variation of type, and differential reproductive output. The fitness of such an RNA replicator (its per capita rate of increase) would likely have been a function of its intrinsic adaptive capabilities determined by its nucleic acid sequence, nucleotide sequence, and the availability of resources.Bernstein H, Byerly HC, Hopf FA, Michod RA, Vemulapalli GK. (1983) The Darwinian Dynamic. Quarterly Review of Biology 56, 185-187. JSTOR 2828805.Michod, R. E. (2006). Darwininian dynamics: evolutionary transitions in fitness and individuality. Princeton University Press. Possible precursors to protein synthesis include the synthesis of short peptide cofactors or the self-catalysing duplication of RNA. It is likely that the ancestral ribosome was composed entirely of RNA, although some roles have since been taken over by proteins. Major remaining questions on this topic include identifying the selective force for the evolution of the ribosome and determining how the genetic code arose. Eugene Koonin has argued that "no compelling scenarios currently exist for the origin of replication and translation, the key processes that together comprise the core of biological systems and the apparent pre-requisite of biological evolution. The RNA World concept might offer the best chance for the resolution of this conundrum but so far cannot adequately account for the emergence of an efficient RNA replicase or the translation system."


From RNA to directed protein synthesis

In line with the RNA world hypothesis, much of modern biology's templated protein biosynthesis is done by RNA molecules—namely tRNAs and the ribosome (consisting of both protein and rRNA components). The most central reaction of peptide bond synthesis is understood to be carried out by base catalysis by the 23S rRNA domain V. Experimental evidence has demonstrated successful di- and tripeptide synthesis with a system consisting of only aminoacyl phosphate adaptors and RNA guides, which could be a possible stepping stone between an RNA world and modern protein synthesis. Aminoacylation ribozymes that can charge tRNAs with their cognate amino acids have also been selected in in vitro experimentation. The authors also extensively mapped fitness landscapes within their selection to find that chance emergence of active sequences was more important that sequence optimization.


Early functional peptides

The first proteins would have had to arise without a fully-fledged system of protein biosynthesis. As discussed above, numerous mechanisms for the prebiotic synthesis of polypeptides exist. However, these random sequence peptides would not have likely had biological function. Thus, significant study has gone into exploring how early functional proteins could have arisen from random sequences. First, some evidence on hydrolysis rates shows that abiotically plausible peptides likely contained significant "nearest-neighbor" biases. This could have had some effect on early protein sequence diversity. In other work by Anthony Keefe and Jack Szostak, mRNA display selection on a library of 80-mers was used to search for sequences with ATP binding activity. They concluded that approximately 1 in random sequences had ATP binding function. While this is a single example of functional frequency in the random sequence space, the methodology can serve as a powerful simulation tool for understanding early protein evolution.


Phylogeny and LUCA

Starting with the work of Carl Woese from 1977,
genomics Genomics is an interdisciplinary field of molecular biology focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as well as its hierarchical, ...
studies have placed the last universal common ancestor (LUCA) of all modern life-forms between Bacteria and a clade formed by Archaea and Eukaryota in the phylogenetic tree of life. It lived over 4 Gya. A minority of studies have placed the LUCA in Bacteria, proposing that Archaea and Eukaryota are evolutionarily derived from within Eubacteria; Thomas Cavalier-Smith suggested in 2006 that the phenotypically diverse bacterial phylum Chloroflexota contained the LUCA. File:Phylogenetic tree of life LUCA.svg, Phylogenetic tree showing the
last universal common ancestor The last universal common ancestor (LUCA) is the hypothesized common ancestral cell from which the three domains of life, the Bacteria, the Archaea, and the Eukarya originated. The cell had a lipid bilayer; it possessed the genetic code a ...
(LUCA) at the root. The major clades are the
Bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ...
on one hand, and the
Archaea Archaea ( ) is a Domain (biology), domain of organisms. Traditionally, Archaea only included its Prokaryote, prokaryotic members, but this has since been found to be paraphyletic, as eukaryotes are known to have evolved from archaea. Even thou ...
and Eukaryota on the other.
In 2016, a set of 355 genes likely present in the LUCA was identified. A total of 6.1 million prokaryotic genes from Bacteria and Archaea were sequenced, identifying 355 protein clusters from among 286,514 protein clusters that were probably common to the LUCA. The results suggest that the LUCA was anaerobic organism, anaerobic with a Wood–Ljungdahl (reductive Acetyl-CoA) pathway, nitrogen- and carbon-fixing, thermophilic. Its cofactor (biochemistry), cofactors suggest dependence upon an environment rich in hydrogen, carbon dioxide, iron, and transition metals. Its genetic material was probably DNA, requiring the 4-nucleotide genetic code, messenger RNA, transfer RNA, and ribosomes to translate the code into proteins such as enzymes. LUCA likely inhabited an anaerobic hydrothermal vent setting in a geochemically active environment. It was evidently already a complex organism, and must have had precursors; it was not the first living thing. The physiology of LUCA has been in dispute. Previous research identified 60 proteins common to all life. File:LUCA systems and environment.svg, LUCA systems and environment included the
Wood–Ljungdahl pathway The Wood–Ljungdahl pathway is a set of biochemical reactions used by some bacteria. It is also known as the reductive acetyl-coenzyme A (acetyl-CoA) pathway. This pathway enables these organisms to use hydrogen () as an electron donor, and c ...
.
Leslie Orgel argued that early translation machinery for the genetic code would be susceptible to error catastrophe. Geoffrey Hoffmann however showed that such machinery can be stable in function against "Orgel's paradox". Metabolic reactions that have also been inferred in LUCA are the incomplete reverse Krebs cycle, gluconeogenesis, the pentose phosphate pathway, glycolysis, reductive amination, and transamination.


Suitable geological environments

A variety of Alternative abiogenesis scenarios, geologic and environmental settings have been proposed for an origin of life. These theories are often in competition with one another as there are many views of prebiotic compound availability, geophysical setting, and early life characteristics. The first organism on Earth likely differed from Last universal common ancestor, LUCA. Between the first appearance of life and where all modern phylogenies began branching, an unknown amount of time passed, with unknown gene transfers, extinctions, and adaptation to environmental niches. Modern phylogenies provide more genetic evidence about LUCA than about its precursors.


Deep sea hydrothermal vents


Hot fluids

Early micro-fossils may have come from a hot world of gases such as methane, ammonia, carbon dioxide, and hydrogen sulfide, toxic to much current life. Analysis of the tree of life (biology), tree of life places thermophilic and hyperthermophilic bacteria and archaea closest to the root, suggesting that life may have evolved in a hot environment. The deep sea or alkaline hydrothermal vent theory posits that life began at submarine hydrothermal vents. William F. Martin, William Martin and Michael Russell (scientist), Michael Russell have suggested These form where hydrogen-rich fluids emerge from below the sea floor, as a result of serpentinite, serpentinization of ultra-mafic olivine with seawater and a pH interface with carbon dioxide-rich ocean water. The vents form a sustained chemical energy source derived from redox reactions, in which electron donors (molecular hydrogen) react with electron acceptors (carbon dioxide); see iron–sulfur world theory. These are exothermic reactions.


Chemiosmotic gradient

Russell demonstrated that alkaline vents create an abiogenic proton electromotive force, proton motive force chemiosmotic gradient, ideal for abiogenesis. Their microscopic compartments "provide a natural means of concentrating organic molecules," composed of iron-sulfur minerals such as mackinawite, endowed these mineral cells with the catalytic properties envisaged by Günter Wächtershäuser. This movement of ions across the membrane depends on two factors: # Diffusion force caused by concentration gradient—all particles including ions diffuse from higher concentration to lower. # Electrostatic force caused by electrical potential gradient—cations like protons H+ diffuse down the electrical potential, anions in the opposite direction. These two gradients together can be expressed as an electrochemical gradient, providing energy for abiogenic synthesis. The proton motive force measures the potential energy stored as proton and voltage gradients across a membrane (differences in proton concentration and electrical potential). The surfaces of mineral particles inside deep-ocean hydrothermal vents have catalytic properties similar to those of enzymes, and can create simple organic molecules, such as methanol (CH3OH) and formic acid, formic, acetic acid, acetic, and pyruvic acids out of the dissolved CO2 in the water, if driven by an applied voltage or by reaction with H2 or H2S. Starting in 1985, researchers proposed that life arose at hydrothermal vents, that spontaneous chemistry in the Earth's crust driven by rock–water interactions at disequilibrium thermodynamically underpinned life's origin, and that the founding lineages of the archaea and bacteria were H2-dependent autotrophs that used CO2 as their terminal acceptor in energy metabolism. In 2016, Martin suggested that the LUCA "may have depended heavily on the geothermal energy of the vent to survive". Pores at deep sea hydrothermal vents are suggested to have been occupied by membrane-bound compartments which promoted biochemical reactions. Metabolic intermediates in the Krebs cycle, gluconeogenesis, amino acid bio-synthetic pathways, glycolysis, the pentose phosphate pathway, and including sugars like ribose, and lipid precursors can occur non-enzymatically at conditions relevant to deep-sea alkaline hydrothermal vents. If the deep marine hydrothermal setting was the site, then abiogenesis could have happened as early as . If life evolved in the ocean at depths of more than ten meters, it would have been shielded both from impacts and the then high levels of solar ultraviolet radiation. The available energy in hydrothermal vents is maximized at 100–150 °C, the temperatures at which
hyperthermophilic A hyperthermophile is an organism that thrives in extremely hot environments—from 60 °C (140 °F) upward. An optimal temperature for the existence of hyperthermophiles is often above 80 °C (176 °F). Hyperthermophiles are of ...
bacteria and thermoacidophilic
archaea Archaea ( ) is a Domain (biology), domain of organisms. Traditionally, Archaea only included its Prokaryote, prokaryotic members, but this has since been found to be paraphyletic, as eukaryotes are known to have evolved from archaea. Even thou ...
live. Arguments against a hydrothermal origin of life state that hyperthermophily was a result of convergent evolution in bacteria and archaea, and that a Mesophile, mesophilic environment would have been more likely. This hypothesis, suggested in 1999 by Galtier, was proposed one year before the discovery of the Lost City Hydrothermal Field, where white-smoker hydrothermal vents average ≈45–90 °C.


Arguments against a vent setting

Production of prebiotic organic compounds at hydrothermal vents is estimated to be . While a large amount of key prebiotic compounds, such as methane, are found at vents, they are in far lower concentrations than in a Miller-Urey Experiment environment. In the case of methane, the production rate at vents is 2–4 orders of magnitude lower than in a Miller–Urey experiment, Miller-Urey Experiment surface atmosphere. Other contra-arguments include the inability to concentrate prebiotic materials, due to strong dilution by seawater. This open system cycles compounds through vent minerals, leaving little residence time to accumulate. All modern cells rely on phosphates and potassium for nucleotide backbone and protein formation respectively, making it likely that the first life forms shared these functions. These elements were not available in high quantities in the Archaean oceans, as both primarily come from the weathering of continental rocks on land, far from vents. Submarine hydrothermal vents are not conducive to condensation reactions needed for polymerisation of macromolecules. An older argument was that key polymers were encapsulated in vesicles after condensation, which supposedly would not happen in saltwater. However, while salinity inhibits vesicle formation from low-diversity mixtures of fatty acids, vesicle formation from a broader, more realistic mix of fatty-acid and 1-alkanol species is more resilient.


Surface bodies of water

Surface bodies of water provide environments that dry out and rewet. Wet-dry cycles concentrate prebiotic compounds and enable condensation reactions to polymerise macromolecules. Moreover, lakes and ponds receive detrital input from weathering of continental apatite-containing rocks, the most common source of phosphates. The amount of exposed continental crust in the Hadean is unknown, but models of early ocean depths and rates of ocean island and continental crust growth make it plausible that there was exposed land. Another line of evidence for a surface start to life is the requirement for Ultraviolet, UV for organism function. UV is necessary for the formation of the U+C nucleotide base pair by partial hydrolysis and nucleobase loss. Simultaneously, UV can be harmful and sterilising to life, especially for simple early lifeforms with little ability to repair radiation damage. Radiation levels from a young Sun were likely greater, and, with no ozone layer, harmful shortwave UV rays would reach the surface of Earth. For life to begin, a shielded environment with influx from UV-exposed sources is necessary to both benefit and protect from UV. Shielding under ice, liquid water, mineral surfaces (e.g. clay) or regolith is possible in a range of surface water settings.


Hot springs

Most branching phylogenies are thermophilic or hyperthermophilic, making it possible that LUCA and preceding lifeforms were similarly thermophilic. Hot springs are formed from the heating of groundwater by geothermal activity. This intersection allows for influxes of material from deep penetrating waters and from surface runoff that transports eroded continental sediments. Interconnected groundwater systems create a mechanism for distribution of life to wider area. Mulkidjanian and co-authors argue that marine environments did not provide the ionic balance and composition universally found in cells, or the ions required by essential proteins and ribozymes, especially with respect to high K+/Na+ ratio, Mn2+, Zn2+ and phosphate concentrations. They argue that the only environments that do this are hot springs similar to ones at Kamchatka. Mineral deposits in these environments under an anoxic atmosphere would have suitable pH, contain precipitates of photocatalytic sulfide minerals that absorb harmful ultraviolet radiation, and have wet-dry cycles that concentrate substrate solutions enough for spontaneous formation of biopolymers created both by chemical reactions in the hydrothermal environment, and by exposure to UV light during transport from vents to adjacent pools. The hypothesized pre-biotic environments are similar to hydrothermal vents, with additional components that help explain peculiarities of the LUCA. A phylogenomic and geochemical analysis of proteins plausibly traced to the LUCA shows that the ionic composition of its intracellular fluid is identical to that of hot springs. The LUCA likely was dependent upon synthesized organic matter for its growth. Experiments show that RNA-like polymers can be synthesized in wet-dry cycling and UV light exposure. These polymers were encapsulated in vesicles after condensation. Potential sources of organics at hot springs might have been transport by interplanetary dust particles, extraterrestrial projectiles, or atmospheric or geochemical synthesis. Hot springs could have been abundant in volcanic landmasses during the Hadean.


Temperate surface bodies of water

A Mesophile, mesophilic start in surface bodies of waters hypothesis has evolved from Darwin's concept of a 'warm little pond' and the Primordial soup, Oparin-Haldane hypothesis. Freshwater bodies under temperate climates can accumulate prebiotic materials while providing suitable environmental conditions conducive to simple life forms. The Archaean climate is uncertain. Atmospheric reconstructions from geochemical proxies and models suggest that sufficient greenhouse gases were present to maintain surface temperatures between 0–40 °C. If so, the temperature was suitable for life could begin. Strong evidence for mesophily from biomolecular studies includes Galtier's GC-content, G+C nucleotide thermometer. G+C are more abundant in thermophiles due to the added stability of an additional hydrogen bond not present between A+T nucleotides. Ribosomal RNA, rRNA sequencing on a diverse range of modern lifeforms shows that Last universal common ancestor, LUCA's reconstructed G+C content was likely representative of moderate temperatures. It is possible that the diversity of thermophiles today is a product of convergent evolution and horizontal gene transfer rather than an inherited trait from LUCA. The reverse gyrase topoisomerase is found exclusively in thermophiles and hyperthermophiles as it allows for coiling of DNA. This enzyme requires the complex molecule ATP synthase, ATP to function. If an origin of life is hypothesised to involve a simple organism that had not yet evolved a membrane, let alone ATP, this would make the existence of reverse gyrase improbable. Moreover, phylogenetic studies show that reverse gyrase had an archaeal origin, and transferred to bacteria by horizontal gene transfer, implying it was not present in the LUCA.


Icy surface bodies of water

Cold-start theories presuppose large ice-covered regions. Stellar evolution models predict that the Sun's luminosity was ≈25% weaker than it is today. Fuelner states that although this significant decrease in solar energy would have formed an icy planet, there is strong evidence for the presence of liquid water, possibly driven by a greenhouse effect. This would mean an early Earth with both liquid oceans and icy poles. Ice melts that form from ice sheets or glacier melts create freshwater pools, another niche capable of wet-dry cycles. While surface pools would be exposed to intense UV radiation, bodies of water within and under ice would be shielded, while remaining connected to exposed areas through ice cracks. Impact melting would allow freshwater and meteoritic input, creating prebiotic components. Near-seawater levels of sodium chloride destabilize fatty acid membrane self-assembly, making freshwater settings appealing for early membranous life. Icy environments would trade the faster reaction rates that occur in warm environments for increased stability and accumulation of larger polymers. Experiments simulating Europa-like conditions of ≈20 °C have synthesised amino acids and adenine, showing that Miller-Urey type syntheses can occur at low temperatures. In an
RNA world The RNA world is a hypothetical stage in the evolutionary history of life on Earth in which self-replicating RNA molecules proliferated before the evolution of DNA and proteins. The term also refers to the hypothesis that posits the existence ...
, the ribozyme would have had even more functions than in a later DNA-RNA-protein-world. For RNA to function, it must be able to fold, a process hindered by temperatures above 30 °C. While RNA folding in Psychrophile, psychrophilic organisms is slower, so is hydrolysis, so folding is more successful. Shorter nucleotides would not suffer from higher temperatures.


Inside the continental crust

An alternative geological environment has been proposed by the geologist Ulrich Schreiber and the physical chemist Christian Mayer: the continental crust. Fault (geology), Tectonic fault zones could present a stable and well-protected environment for long-term prebiotic evolution. Inside these systems of cracks and cavities, water and carbon dioxide present the bulk solvents. Their phase state would depend on the local temperature and pressure conditions and could vary between liquid, gaseous and Supercritical fluid, supercritical. When forming two separate phases (e.g., liquid water and supercritical carbon dioxide in depths of little more than 1 km), the system provides optimal conditions for Phase-transfer catalyst, phase transfer reactions. Concurrently, the contents of the tectonic fault zones are being supplied by a multitude of inorganic educts (e.g., carbon monoxide, hydrogen, ammonia, hydrogen cyanide, nitrogen, and even phosphate from dissolved apatite) and simple organic molecules formed by hydrothermal chemistry (e.g. amino acids, long-chain amines, fatty acids, long-chain aldehydes). An especially interesting section of the tectonic fault zones is located at a depth of approximately 1000 m. For the carbon dioxide part of the bulk solvent, it provides temperature and pressure conditions near the phase transition point between the Supercritical fluid, supercritical and the gaseous state. This leads to a natural accumulation zone for Lipophilicity, lipophilic organic molecules that dissolve well in Supercritical carbon dioxide, supercritical CO2, but not in its gaseous state, leading to their local precipitation. Periodic pressure variations such as caused by Geyser, geyser activity or Tidal force, tidal influences result in periodic phase transitions, keeping the local reaction environment in a constant Non-equilibrium thermodynamics, non-equilibrium state. In presence of Amphiphile, amphiphilic compounds (such as the long chain amines and fatty acids mentioned above), subsequent generations of vesicles are being formed that are constantly and efficiently being selected for their stability.


Homochirality

Homochirality is the geometric uniformity of materials composed of chirality, chiral (non-mirror-symmetric) units. Living organisms use molecules that have the same chirality (handedness): with almost no exceptions, amino acids are left-handed while nucleotides and carbohydrate, sugars are right-handed. Chiral molecules can be synthesized, but in the absence of a chiral source or a chiral catalyst, they are formed in a 50/50 (racemic) mixture of both enantiomer, forms. Known mechanisms for the production of non-racemic mixtures from racemic starting materials include: asymmetric physical laws, such as the electroweak interaction; asymmetric environments, such as those caused by circular polarization, circularly polarized light, quartz, quartz crystals, or the Earth's rotation, statistical fluctuations during racemic synthesis, "Special Issue: Proceedings from the Eighteenth International Symposium on Chirality (ISCD-18), Busan, Korea, 2006" and spontaneous symmetry breaking. Once established, chirality would be selected for. A small bias (enantiomeric excess) in the population can be amplified into a large one by autocatalysis#Asymmetric autocatalysis, asymmetric autocatalysis, such as in the Soai reaction. In asymmetric autocatalysis, the catalyst is a chiral molecule, which means that a chiral molecule is catalyzing its own production. An initial enantiomeric excess, such as can be produced by polarized light, then allows the more abundant enantiomer to outcompete the other. Homochirality may have started in outer space: on the Murchison meteorite, the left-handed amino acid alanine, L-alanine is more than twice as frequent as its right-handed D form, and glutamic acid, L-glutamic acid is more than three times as abundant as its D counterpart. Amino acids from meteorites show a left-handed bias, whereas sugars show a predominantly right-handed bias: this is the same preference found in living organisms, suggesting an abiogenic origin of these compounds. In a 2010 experiment by Robert Root-Bernstein, "two D-RNA-oligonucleotides having inverse base sequences (D-CGUA and D-AUGC) and their corresponding L-RNA-oligonucleotides (L-CGUA and L-AUGC) were synthesized and their affinity determined for Gly and eleven pairs of L- and D-amino acids". The results suggest that homochirality, including codon directionality, might have "emerged as a function of the origin of the genetic code".


See also

* Alternative abiogenesis scenarios * Autopoiesis * * * * * * Manganese metallic nodules


Notes


References


Sources

* * * * * * * * * * * * * * * * * * * International Symposium on the Origin of Life on the Earth (held at Moscow, 19–24 August 1957) * * * Proceedings of the SPIE held at San Jose, California, 22–24 January 2001 * * * * * * Proceedings of the SPIE held at San Diego, California, 31 July–2 August 2005 * * *


External links


Making headway with the mysteries of life's origins
– Adam Mann (PNAS; 14 April 2021)
Exploring Life's Origins
a virtual exhibit at the Museum of Science (Boston)
How life began on Earth
– Marcia Malory (Earth Facts; 2015)
The Origins of Life
– Richard Dawkins et al. (BBC Radio; 2004)
Life in the Universe
– Essay by Stephen Hawking (1996) {{Authority control Origin of life, Astrobiology Evolutionarily significant biological phenomena Evolutionary biology Natural events Prebiotic chemistry