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Pore-forming proteins (PFTs, also known as pore-forming toxins) are usually produced by
bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ...
, and include a number of protein
exotoxins An exotoxin is a toxin secreted by bacteria. An exotoxin can cause damage to the host by destroying cells or disrupting normal cellular metabolism. They are highly potent and can cause major damage to the host. Exotoxins may be secreted, or, sim ...
but may also be produced by other organisms such as apple snails that produce perivitellin-2 or
earthworms An earthworm is a soil-dwelling terrestrial animal, terrestrial invertebrate that belongs to the phylum Annelida. The term is the common name for the largest members of the class (biology), class (or subclass (biology), subclass, depending on ...
, who produce lysenin. They are frequently
cytotoxic Cytotoxicity is the quality of being toxic to cells. Examples of toxic agents are toxic metals, toxic chemicals, microbe neurotoxins, radiation particles and even specific neurotransmitters when the system is out of balance. Also some types of dr ...
(i.e., they kill cells), as they create unregulated pores in the
membrane A membrane is a selective barrier; it allows some things to pass through but stops others. Such things may be molecules, ions, or other small particles. Membranes can be generally classified into synthetic membranes and biological membranes. Bi ...
of targeted cells.


Types

PFTs can be divided into two categories, depending on the alpha-helical or beta-barrel architecture of their transmembrane channel that can consist either of * Alpha-pore-forming toxins ** e.g., Haemolysin E family, actinoporins, Corynebacterial porin B, Cytolysin A of ''E. coli''. * Beta-barrel pore-forming toxins ** e.g. α-Hemolysin (Fig 1), PVL – Panton-Valentine leukocidin, various insecticidal toxins. Other categories: * Large beta-barrel pore-forming toxins ** MACPF and Cholesterol-dependent cytolysins (CDCs), gasdermin * Binary toxins ** e.g.,
Anthrax toxin Anthrax toxin is a three-protein exotoxin secreted by virulent strains of the bacterium, '' Bacillus anthracis''—the causative agent of anthrax. The toxin was first discovered by Harry Smith in 1954. Anthrax toxin is composed of a cell-bin ...
, Pleurotolysin * Small pore-forming toxins ** e.g., Gramicidin A According to TCDB, there are following families of pore-forming toxins: * 1.C.3 α- Hemolysin (αHL) family: * 1.C.4 Aerolysin family * 1.C.5 ε-Toxin family * 1.C.11 RTX-toxin superfamily * 1.C.12 Membrane attack complex/perforin superfamily * 1.C.13 Leukocidin family * 1.C.14 Cytohemolysin (CHL) family * 1.C.39 Thiol-activated cholesterol-dependent cytolysin family * 1.C.43 Lysenin family * 1.C.56 ''Pseudomonas syringae'' HrpZ cation channel family * 1.C.57 Clostridial cytotoxin family * 1.C.74 Snake cytotoxin (SCT) family * 1.C.97 Pleurotolysin pore-forming family


Beta-pore-forming toxins

β-PFTs are so-named because of their structural characteristics: they are composed mostly of
β-strand The beta sheet (β-sheet, also β-pleated sheet) is a common motif of the regular protein secondary structure. Beta sheets consist of beta strands (β-strands) connected laterally by at least two or three backbone hydrogen bonds, forming a gene ...
-based domains. They have divergent sequences, and are classified by Pfam into a number of families including Leukocidins, Etx-Mtx2, Toxin-10, and aegerolysin. X-ray crystallographic structures have revealed some commonalities: α-hemolysin and Panton-Valentine leukocidin S PDB are structurally related. Similarly, aerolysin and clostridial epsilon-toxin. and Mtx2 are linked in the Etx/Mtx2 family. The ß-PFTs include a number of toxins of commercial interest for the control of pest insects. These toxins are potent but also highly specific to a limited range of target insects, making them safe biological control agents. Insecticidal members of the Etx/Mtx2 family include Mtx2 and Mtx3 from '' Lysinibacillus sphaericus'' that can control mosquito vectors of human diseases and also Cry15, Cry23, Cry33, Cry38, Cry45, Cry51, Cry60, Cry64 and Cry74 from ''
Bacillus thuringiensis ''Bacillus thuringiensis'' (or Bt) is a gram-positive bacteria, gram-positive, soil-dwelling bacterium, the most commonly used biological pesticide worldwide. ''B. thuringiensis'' also occurs naturally in the gut of caterpillars of various types ...
'' that control a range of insect pests that can cause great losses to agriculture. Insecticidal toxins in the Toxin_10 family show an overall similarity to the aerolysin and Etx/Mtx2 toxin structures but differ in two notable features. While all of these toxins feature a head domain and a larger, extended beta-sheet tail domain, in the Toxin_10 family, the head is formed exclusively from the N-terminal region of the primary amino acid sequence whereas regions from throughout the protein sequence contribute to the head domain in Etx/Mtx2 toxins. In addition, the head domains of the Toxin_10 proteins show lectin-like features of carbohydrate binding domains. The only reported natural targets of Toxin_10 proteins are insects. With the exception of Cry36 and Cry78, the Toxin_10 toxins appear to act as two-part, binary toxins. The partner proteins in these combinations may belong to different structural groups, depending on the individual toxin: two Toxin_10 proteins (BinA and BinB) act together in the Bin mosquitocidal toxin of ''Lysinibacillus sphaericus''; the Toxin_10 Cry49 is co-dependent on the 3-domain toxin family member Cry48 for its activity against ''
Culex ''Culex'' or typical mosquitoes are a genus of mosquitoes, several species of which serve as vectors of one or more important diseases of birds, humans, and other animals. The diseases they vector include arbovirus infections such as West Nil ...
'' mosquito larvae; and the ''Bacillus thuringiensis'' Toxin_10 protein Cry35 interacts with the aegerolysin family Cry34 to kill
Western Corn Rootworm The Western corn rootworm, ''Diabrotica virgifera virgifera'', is one of the most devastating corn rootworm species in North America, especially in the midwestern corn-growing areas such as Iowa. A related species, the Northern corn rootworm, '' ...
. This toxin pair has been included in insect resistant plants such as SmartStax corn.


Mode of action

β-PFTs are dimorphic proteins that exist as soluble
monomer A monomer ( ; ''mono-'', "one" + '' -mer'', "part") is a molecule that can react together with other monomer molecules to form a larger polymer chain or two- or three-dimensional network in a process called polymerization. Classification Chemis ...
s and then assemble to form multimeric assemblies that constitute the pore. Figure 1 shows the pore-form of α- hemolysin, the first crystal structure of a β-PFT in its pore-form. 7 α-hemolysin monomers come together to create the
mushroom A mushroom or toadstool is the fleshy, spore-bearing Sporocarp (fungi), fruiting body of a fungus, typically produced above ground on soil or another food source. ''Toadstool'' generally refers to a poisonous mushroom. The standard for the n ...
-shaped pore. The 'cap' of the mushroom sits on the surface of the cell, and the 'stalk' of the mushroom penetrates the cell membrane, rendering it permeable (see later). The 'stalk' is composed of a 14-strand
β-barrel In protein structures, a beta barrel (β barrel) is a beta sheet (β sheet) composed of Protein tandem repeats, tandem repeats that twists and coils to form a closed toroidal structure in which the first strand is bonded to the last strand (hydrog ...
, with two strands donated from each monomer. A structure of the ''
Vibrio cholerae ''Vibrio cholerae'' is a species of Gram-negative bacteria, Gram-negative, Facultative anaerobic organism, facultative anaerobe and Vibrio, comma-shaped bacteria. The bacteria naturally live in Brackish water, brackish or saltwater where they att ...
'' cytolysin PDB in the pore form is also heptameric; however, ''
Staphylococcus aureus ''Staphylococcus aureus'' is a Gram-positive spherically shaped bacterium, a member of the Bacillota, and is a usual member of the microbiota of the body, frequently found in the upper respiratory tract and on the skin. It is often posi ...
'' gamma-hemolysin PDB reveals an octomeric pore, consequently with a 16-strand 'stalk'. The Panton-Valentine leucocidin S structure shows a highly related structure, but in its soluble monomeric state. This shows that the strands involved in forming the 'stalk' are in a very different conformation – shown in Fig 2. While the Bin toxin of ''Lysinibacillus sphaericus'' is able to form pores in artificial membranes and mosquito cells in culture, it also causes a series of other cellular changes including the uptake of toxin in recycling endosomes and the production of large, autophagic vesicles and the ultimate cause of cell death may be apoptotic. Similar effects on cell biology are also seen with other Toxin_10 activities but the roles of these events in toxicity remain to be established.


=Assembly

= The transition between soluble monomer and membrane-associated protomer to oligomer is not a trivial one: It is believed that β-PFTs, follow as similar assembly pathway as the CDCs (see later), in that they must first assemble on the cell-surface (in a receptor-mediated fashion in some cases) in a pre-pore state. Following this, the large-scale conformational change occurs in which the membrane spanning section is formed and inserted into the membrane. The portion entering the membrane, referred to as the head, is usually apolar and hydrophobic, this produces an energetically favorable insertion of the pore-forming toxin.


Specificity

Some β-PFTs such as clostridial ε-toxin and ''
Clostridium perfringens ''Clostridium perfringens'' (formerly known as ''C. welchii'', or ''Bacillus welchii'') is a Gram-positive, bacillus (rod-shaped), anaerobic, spore-forming pathogenic bacterium of the genus '' Clostridium''. ''C. perfringens'' is ever-present ...
'' enterotoxin (CPE) bind to the cell membrane via specific receptors – possibly certain
claudin Claudins are a family of proteins which, along with occludin, are the most important components of the tight junctions ( zonulae occludentes). Tight junctions establish the paracellular barrier that controls the flow of molecules in the inter ...
s for CPE, possibly GPI anchors or other sugars for ε-toxin – these receptors help raise the local concentration of the toxins, allowing oligomerisation and pore formation. The BinB Toxin_10 component of the ''Lysinibacillus sphaericus'' Bin toxin specifically recognises a GPI anchored alpha glycosidase in the midgut of ''Culex'' and ''
Anopheles ''Anopheles'' () is a genus of mosquito first described by the German entomologist Johann Wilhelm Meigen, J. W. Meigen in 1818, and are known as nail mosquitoes and marsh mosquitoes. Many such mosquitoes are Disease vector, vectors of the paras ...
'' mosquitoes but not the related protein found in ''
Aedes ''Aedes'' (also known as the tiger mosquito) is a genus of mosquitoes originally found in tropical and subtropical zones, but now found on all continents except Antarctica. Some species have been spread by human activity: ''Aedes albopictus'', ...
'' mosquitoes, hence conferring specificity on the toxin.


The cyto-lethal effects of the pore

When the pore is formed, the tight regulation of what can and cannot enter/leave a cell is disrupted. Ions and small molecules, such as
amino acids Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although over 500 amino acids exist in nature, by far the most important are the Proteinogenic amino acid, 22 α-amino acids incorporated into p ...
and
nucleotides Nucleotides are Organic compound, organic molecules composed of a nitrogenous base, a pentose sugar and a phosphate. They serve as monomeric units of the nucleic acid polymers – deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both o ...
within the cell, flow out, and water from the surrounding tissue enters. The loss of important small molecules to the cell can disrupt
protein synthesis Protein biosynthesis, or protein synthesis, is a core biological process, occurring inside cells, balancing the loss of cellular proteins (via degradation or export) through the production of new proteins. Proteins perform a number of critica ...
and other crucial cellular reactions. The loss of ions, especially
calcium Calcium is a chemical element; it has symbol Ca and atomic number 20. As an alkaline earth metal, calcium is a reactive metal that forms a dark oxide-nitride layer when exposed to air. Its physical and chemical properties are most similar to it ...
, can cause
cell signaling In biology, cell signaling (cell signalling in British English) is the Biological process, process by which a Cell (biology), cell interacts with itself, other cells, and the environment. Cell signaling is a fundamental property of all Cell (biol ...
pathways to be spuriously activated or deactivated. The uncontrolled entry of water into a cell can cause the cell to swell up uncontrollably: this causes a process called
blebbing In cell biology, a bleb (or snout) is a bulge of the plasma membrane of a cell, characterized by a spherical, "blister-like", bulky morphology. It is characterized by the decoupling of the cytoskeleton from the plasma membrane, degrading the inte ...
, wherein large parts of the cell membrane are distorted and give way under the mounting internal pressure. In the end, this can cause the cell to burst. In particular, nuclear - free erythrocytes under the influence of alpha-staphylotoxin undergo hemolysis with the loss of a large protein hemoglobin.


Binary toxins

There are many different types of binary toxins. The term binary toxin simply implies a two part toxin where both components are necessary for toxic activity. Several β-PFTs form binary toxins. As discussed above, the majority of the Toxin_10 family proteins act as part of binary toxins with partner proteins that may belong to the Toxin_10 or other structural families. The interplay of the individual components has not been well studied to date. Other beta sheet toxins of commercial importance are also binary. These include the Cry23/Cry37 toxin from ''Bacillus thuringiensis''. These toxins have some structural similarity to the Cry34/Cry35 binary toxin but neither component shows a match to established Pfam families and the features of the larger Cry23 protein have more in common with the Etx/Mtx2 family than the Toxin_10 family to which Cry35 belongs.


Enzymatic binary toxins

Some binary toxins are composed of an enzymatic component and a component that is involved in membrane interactions and entry of the enzymatic component into the cell. The membrane interacting component may have structural domains that are rich in beta sheets. Binary toxins, such as anthrax lethal and edema toxins (Main article: Anthrax toxin), ''C. perfringens'' iota toxin and ''C. difficile'' cyto-lethal toxins consist of two components (hence ''binary''): * an enzymatic component – A * a membrane-altering component – B In these enzymatic binary toxins, the B component facilitates the entry of the enzymatic 'payload' (A subunit) into the target cell, by forming homooligomeric pores, as shown above for βPFTs. The A component then enters the cytosol and inhibits normal cell functions by one of the following means:


ADP-ribosylation

ADP-ribosylation is a common enzymatic method used by different bacterial toxins from various species. Toxins such as ''C. perfringens'' iota toxin and ''C. botulinum'' C2 toxin, attach a ribosyl-ADP moiety to surface arginine residue 177 of G-actin. This prevents G-actin assembling to form F-actin, and, thus, the cytoskeleton breaks down, resulting in cell death. Insecticidal members of the ADP-ribosyltransferase family of toxins include the Mtx1 toxin of ''Lysinibacillus sphaericus'' and the Vip1/Vip2 toxin of ''Bacillus thuringiensis'' and some members of the toxin complex (Tc) toxins from gram negative bacteria such as '' Photorhabdus'' and '' Xenorhabdus'' species. The beta sheet-rich regions of the Mtx1 protein are
lectin Lectins are carbohydrate-binding proteins that are highly specific for sugar Moiety (chemistry), groups that are part of other molecules, so cause agglutination (biology), agglutination of particular cells or precipitation of glycoconjugates an ...
-like sequences that may be involved in glycolipid interactions.


Proteolysis of mitogen-activated protein kinase kinases (MAPKK)

The A component of
anthrax toxin Anthrax toxin is a three-protein exotoxin secreted by virulent strains of the bacterium, '' Bacillus anthracis''—the causative agent of anthrax. The toxin was first discovered by Harry Smith in 1954. Anthrax toxin is composed of a cell-bin ...
lethal toxin is
zinc Zinc is a chemical element; it has symbol Zn and atomic number 30. It is a slightly brittle metal at room temperature and has a shiny-greyish appearance when oxidation is removed. It is the first element in group 12 (IIB) of the periodic tabl ...
-metallo
protease A protease (also called a peptidase, proteinase, or proteolytic enzyme) is an enzyme that catalysis, catalyzes proteolysis, breaking down proteins into smaller polypeptides or single amino acids, and spurring the formation of new protein products ...
, which shows specificity for a conserved family of
mitogen-activated protein kinase A mitogen-activated protein kinase (MAPK or MAP kinase) is a type of serine/threonine-specific protein kinases involved in directing cellular responses to a diverse array of stimuli, such as mitogens, osmotic stress, heat shock and proinflamma ...
s. The loss of these proteins results in a breakdown of cell signaling, which, in turn, renders the cell insensitive to outside stimuli – therefore no
immune response An immune response is a physiological reaction which occurs within an organism in the context of inflammation for the purpose of defending against exogenous factors. These include a wide variety of different toxins, viruses, intra- and extracellula ...
is triggered.


Increasing intracellular levels of cAMP

Anthrax toxin edema toxin triggers a
calcium Calcium is a chemical element; it has symbol Ca and atomic number 20. As an alkaline earth metal, calcium is a reactive metal that forms a dark oxide-nitride layer when exposed to air. Its physical and chemical properties are most similar to it ...
ion influx into the target cell. This subsequently elevates intracellular cAMP levels. This can profoundly alter any sort of immune response, by inhibiting leucocyte proliferation,
phagocytosis Phagocytosis () is the process by which a cell (biology), cell uses its plasma membrane to engulf a large particle (≥ 0.5 μm), giving rise to an internal compartment called the phagosome. It is one type of endocytosis. A cell that performs ph ...
, and pro inflammatory
cytokine Cytokines () are a broad and loose category of small proteins (~5–25 kDa) important in cell signaling. Cytokines are produced by a broad range of cells, including immune cells like macrophages, B cell, B lymphocytes, T cell, T lymphocytes ...
release.


Cholesterol-dependent cytolysins

CDCs, such as pneumolysin, from '' S. pneumoniae'', form pores as large as 260 Ã… (26 nm), containing between 30 and 44 monomer units.
Electron microscopy An electron microscope is a microscope that uses a beam of electrons as a source of illumination. It uses electron optics that are analogous to the glass lenses of an optical light microscope to control the electron beam, for instance focusing i ...
studies of pneumolysin show that it assembles into large multimeric peripheral membrane complexes before undergoing a conformational change in which a group of α-helices in each monomer change into extended, amphipathic β-hairpins that span the membrane, in a manner reminiscent of α-haemolysin, albeit on a much larger scale (Fig 3). CDCs are homologous to the MACPF family of pore-forming toxins, and it is suggested that both families use a common mechanism (Fig 4). Eukaryote MACPF proteins function in immune defence and are found in proteins such as perforin and complement C9 though perivitellin-2 is a MACPF attached to a delivery
lectin Lectins are carbohydrate-binding proteins that are highly specific for sugar Moiety (chemistry), groups that are part of other molecules, so cause agglutination (biology), agglutination of particular cells or precipitation of glycoconjugates an ...
that has enterotoxic and
neurotoxic Neurotoxicity is a form of toxicity in which a biological, chemical, or physical agent produces an adverse effect on the structure or function of the central and/or peripheral nervous system. It occurs when exposure to a substance – specifical ...
properties toward mice. A family of highly conserved cholesterol-dependent cytolysins, closely related to perfringolysin from ''
Clostridium perfringens ''Clostridium perfringens'' (formerly known as ''C. welchii'', or ''Bacillus welchii'') is a Gram-positive, bacillus (rod-shaped), anaerobic, spore-forming pathogenic bacterium of the genus '' Clostridium''. ''C. perfringens'' is ever-present ...
'' are produced by bacteria from across the order Bacillales and include anthrolysin, alveolysin and sphaericolysin. Sphaericolysin has been shown to exhibit toxicity to a limited range of insects injected with the purified protein.


Biological function

Bacteria may invest much time and energy in making these toxins: CPE can account for up to 15% of the dry mass of ''C. perfringens'' at the time of
sporulation In biology, a spore is a unit of sexual (in fungi) or asexual reproduction that may be adapted for dispersal and for survival, often for extended periods of time, in unfavourable conditions. Spores form part of the life cycles of many plant ...
. The purpose of toxins is thought to be one of the following: * Defense against
phagocytosis Phagocytosis () is the process by which a cell (biology), cell uses its plasma membrane to engulf a large particle (≥ 0.5 μm), giving rise to an internal compartment called the phagosome. It is one type of endocytosis. A cell that performs ph ...
, e.g., by a
macrophage Macrophages (; abbreviated MPhi, φ, MΦ or MP) are a type of white blood cell of the innate immune system that engulf and digest pathogens, such as cancer cells, microbes, cellular debris and foreign substances, which do not have proteins that ...
. * Inside a
host A host is a person responsible for guests at an event or for providing hospitality during it. Host may also refer to: Places * Host, Pennsylvania, a village in Berks County * Host Island, in the Wilhelm Archipelago, Antarctica People * ...
, provoking a response which is beneficial for the proliferation of the bacteria, for example in
cholera Cholera () is an infection of the small intestine by some Strain (biology), strains of the Bacteria, bacterium ''Vibrio cholerae''. Symptoms may range from none, to mild, to severe. The classic symptom is large amounts of watery diarrhea last ...
. or in the case of insecticidal bacteria, killing the insect to provide a rich source of nutrients in the cadaver for bacterial growth. * Food: After the target cell has ruptured and released its contents, the bacteria can scavenge the remains for nutrients or, as above, bacteria can colonise insect cadavers. * Environment: The mammalian
immune response An immune response is a physiological reaction which occurs within an organism in the context of inflammation for the purpose of defending against exogenous factors. These include a wide variety of different toxins, viruses, intra- and extracellula ...
helps create the
anaerobic Anaerobic means "living, active, occurring, or existing in the absence of free oxygen", as opposed to aerobic which means "living, active, or occurring only in the presence of oxygen." Anaerobic may also refer to: *Adhesive#Anaerobic, Anaerobic ad ...
environment that anaerobic bacteria require.


See also

*
Exotoxin An exotoxin is a toxin secreted by bacteria. An exotoxin can cause damage to the host by destroying cells or disrupting normal cellular metabolism. They are highly potent and can cause major damage to the host. Exotoxins may be secreted, or, sim ...


References


Further reading

*
A deadly toxin with a romantic name
Panton-Valentine Leukocidin complex. PDBe Quips


External links

* {{DEFAULTSORT:Pore-Forming Toxin Protein toxins Peripheral membrane proteins