A karyotype is the general appearance of the complete set of
metaphase chromosomes in the cells of a
species or in an individual organism, mainly including their sizes, numbers, and shapes.
Karyotyping is the process by which a karyotype is discerned by determining the chromosome complement of an individual, including the number of chromosomes and any abnormalities.

A karyogram or idiogram is a graphical depiction of a karyotype, wherein chromosomes are organized in pairs, ordered by size and position of centromere for chromosomes of the same size. Karyotyping generally combines
light microscopy
Microscopy is the technical field of using microscopes to view objects and areas of objects that cannot be seen with the naked eye (objects that are not within the resolution range of the normal eye). There are three well-known branches of micr ...
and
photography, and results in a
photomicrographic (or simply micrographic) karyogram. In contrast, a
schematic karyogram is a designed graphic representation of a karyotype. In schematic karyograms, just one of the sister
chromatids of each chromosome is generally shown for brevity, and in reality they are generally so close together that they look as one on photomicrographs as well unless the resolution is high enough to distinguish them. The study of whole sets of chromosomes is sometimes known as karyology.
Karyotypes describe the
chromosome count of an organism and what these chromosomes look like under a light
microscope. Attention is paid to their length, the position of the
centromeres, banding pattern, any differences between the
sex chromosomes, and any other physical characteristics. The preparation and study of karyotypes is part of
cytogenetics.
The basic number of chromosomes in the
somatic
Somatic may refer to:
* Somatic (biology), referring to the cells of the body in contrast to the germ line cells
** Somatic cell, a non-gametic cell in a multicellular organism
* Somatic nervous system, the portion of the vertebrate nervous sys ...
cells of an individual or a species is called the ''somatic number'' and is designated ''2n''. In the
germ-line
In biology and genetics, the germline is the population of a multicellular organism's cells that pass on their genetic material to the progeny ( offspring). In other words, they are the cells that form the egg, sperm and the fertilised egg. Th ...
(the sex cells) the chromosome number is ''n'' (humans: n = 23).
p28 Thus, in humans 2n = 46.
So, in normal
diploid
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively ...
organisms,
autosomal chromosomes are present in two copies. There may, or may not, be
sex chromosomes.
Polyploid cells have multiple copies of chromosomes and
haploid
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively ...
cells have single copies.
Karyotypes can be used for many purposes; such as to study
chromosomal aberrations,
cellular function,
taxonomic
Taxonomy is the practice and science of categorization or classification.
A taxonomy (or taxonomical classification) is a scheme of classification, especially a hierarchical classification, in which things are organized into groups or types. ...
relationships,
medicine and to gather information about past
evolutionary events (''
karyosystematics'').
Observations on karyotypes
Staining
The study of karyotypes is made possible by
staining
Staining is a technique used to enhance contrast in samples, generally at the microscopic level. Stains and dyes are frequently used in histology (microscopic study of biological tissues), in cytology (microscopic study of cells), and in the ...
. Usually, a suitable
dye
A dye is a colored substance that chemically bonds to the substrate to which it is being applied. This distinguishes dyes from pigments which do not chemically bind to the material they color. Dye is generally applied in an aqueous solution an ...
, such as
Giemsa, is applied after
cells
Cell most often refers to:
* Cell (biology), the functional basic unit of life
Cell may also refer to:
Locations
* Monastic cell, a small room, hut, or cave in which a religious recluse lives, alternatively the small precursor of a monastery w ...
have been arrested during
cell division by a solution of
colchicine usually in
metaphase or
prometaphase when most condensed. In order for the
Giemsa stain to adhere correctly, all chromosomal proteins must be digested and removed. For humans,
white blood cells are used most frequently because they are easily induced to divide and grow in
tissue culture.
[Gustashaw K.M. 1991. Chromosome stains. In ''The ACT Cytogenetics Laboratory Manual'' 2nd ed, ed. M.J. Barch. The Association of Cytogenetic Technologists, Raven Press, New York.] Sometimes observations may be made on non-dividing (
interphase) cells. The sex of an unborn
fetus can be predicted by observation of interphase cells (see
amniotic centesis and
Barr body).
Observations
Six different characteristics of karyotypes are usually observed and compared:
# Differences in absolute sizes of chromosomes. Chromosomes can vary in absolute size by as much as twenty-fold between genera of the same family. For example, the legumes ''
Lotus tenuis
''Lotus tenuis'' is a flowering plant of the pea family Fabaceae, native to western and southern Europe and southwest Asia. Some botanists treat it as a subspecies of ''Lotus corniculatus'', as ''L. corniculatus'' subsp. ''tenuifolius''.
Its ...
'' and ''
Vicia faba'' each have six pairs of chromosomes, yet ''V. faba'' chromosomes are many times larger. These differences probably reflect different amounts of DNA duplication.
# Differences in the position of
centromeres. These differences probably came about through
translocations.
# Differences in relative size of chromosomes. These differences probably arose from segmental interchange of unequal lengths.
# Differences in basic number of chromosomes. These differences could have resulted from successive unequal translocations which removed all the essential genetic material from a chromosome, permitting its loss without penalty to the organism (the dislocation hypothesis) or through fusion. Humans have one pair fewer chromosomes than the great apes. Human chromosome 2 appears to have resulted from the fusion of two ancestral chromosomes, and many of the genes of those two original chromosomes have been translocated to other chromosomes.
# Differences in number and position of satellites.
Satellites
A satellite or artificial satellite is an object intentionally placed into orbit in outer space. Except for passive satellites, most satellites have an electricity generation system for equipment on board, such as solar panels or radioisotop ...
are small bodies attached to a chromosome by a thin thread.
# Differences in degree and distribution of
heterochromatic regions. Heterochromatin stains darker than
euchromatin. Heterochromatin is packed tighter. Heterochromatin consists mainly of genetically inactive and repetitive DNA sequences as well as containing a larger amount of
Adenine-
Thymine pairs. Euchromatin is usually under active transcription and stains much lighter as it has less affinity for the
giemsa stain.
[Thompson & Thompson Genetics in Medicine 7th Ed] Euchromatin regions contain larger amounts of
Guanine-
Cytosine pairs. The staining technique using
giemsa staining is called
G banding and therefore produces the typical "G-Bands".
A full account of a karyotype may therefore include the number, type, shape and banding of the chromosomes, as well as other cytogenetic information.
Variation is often found:
# between the sexes,
# between the
germ-line
In biology and genetics, the germline is the population of a multicellular organism's cells that pass on their genetic material to the progeny ( offspring). In other words, they are the cells that form the egg, sperm and the fertilised egg. Th ...
and
soma (between
gametes and the rest of the body),
# between members of a population (
chromosome polymorphism),
# in
geographic specialization, and
# in
mosaics
A mosaic is a pattern or image made of small regular or irregular pieces of colored stone, glass or ceramic, held in place by plaster/mortar, and covering a surface. Mosaics are often used as floor and wall decoration, and were particularly pop ...
or otherwise abnormal individuals.
Human karyogram

Both the micrographic and schematic karyograms shown in this section have a standard chromosome layout, and display dark and white regions as seen on
G banding, which is the appearance of the chromosomes after treatment with
trypsin (to partially digest the chromosomes) and
staining
Staining is a technique used to enhance contrast in samples, generally at the microscopic level. Stains and dyes are frequently used in histology (microscopic study of biological tissues), in cytology (microscopic study of cells), and in the ...
with
Giemsa stain. They show the normal human
diploid
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively ...
karyotype, which is the typical composition of the
genome within a normal cell of the human body, and which contains 22 pairs of
autosomal chromosomes and one pair of
sex chromosomes (allosomes). A major exception to diploidy in humans is
gametes (sperm and egg cells) which are monoploid with 23 unpaired chromosomes, and this
ploidy
Ploidy () is the number of complete sets of chromosomes in a cell (biology), cell, and hence the number of possible alleles for Autosome, autosomal and Pseudoautosomal region, pseudoautosomal genes. Sets of chromosomes refer to the number of mat ...
is not shown in these karyograms.
The schematic karyogram in this section is a graphical representation of the idealized karyotype. For each chromosome pair, the scale to the left shows the length in terms of million
base pairs
A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA ...
, and the scale to the right shows the designations of the
bands and sub-bands. Such bands and sub-bands are used by the
International System for Human Cytogenomic Nomenclature to describe locations of
chromosome abnormalities. Each row of chromosomes is vertically aligned at
centromere level.
Human chromosome groups
Based on the karyogram characteristics of size, position of the
centromere and sometimes the presence of a
chromosomal satellite
Satellite or SAT chromosomes are chromosomes that contain secondary constructs that serve as identification. They are observed in Acrocentric chromosomes. In addition to the centromere, one or more secondary constrictions can be observed in so ...
(a segment distal to a
secondary constriction
Secondary constrictions are the constricted or the narrow region found at any point of the chromosome other than that of centromere (primary constriction). The difference between the two constrictions can be noticed during anaphase, as chromosom ...
), the human chromosomes are classified into the following groups:
Alternatively, the human genome can be classified as follows, based on pairing, sex differences, as well as location within the
cell nucleus
The cell nucleus (pl. nuclei; from Latin or , meaning ''kernel'' or ''seed'') is a membrane-bound organelle found in eukaryotic cells. Eukaryotic cells usually have a single nucleus, but a few cell types, such as mammalian red blood cells, h ...
versus inside
mitochondria
A mitochondrion (; ) is an organelle found in the Cell (biology), cells of most Eukaryotes, such as animals, plants and Fungus, fungi. Mitochondria have a double lipid bilayer, membrane structure and use aerobic respiration to generate adenosi ...
:
*22
homologous
Homology may refer to:
Sciences
Biology
*Homology (biology), any characteristic of biological organisms that is derived from a common ancestor
*Sequence homology, biological homology between DNA, RNA, or protein sequences
* Homologous chrom ...
autosomal chromosome pairs (chromosomes 1 to 22). Homologous means that they have the same genes in the same loci, and autosomal means that they are not sex chromomes.
*Two
sex chromosome (in green rectangle at bottom right in the schematic karyogram, with adjacent silhouettes of typical representative
phenotypes): The most common karyotypes for
females contain two
X chromosomes and are denoted 46,XX;
males usually have both an X and a
Y chromosome denoted 46,XY. However, approximately 0.018% percent of humans are
intersex, sometimes due to variations in sex chromosomes.
*The
human mitochondrial genome
Human mitochondrial genetics is the study of the genetics of human mitochondrial DNA (the DNA contained in human mitochondria). The human mitochondrial genome is the entirety of hereditary information contained in human mitochondria. Mitochondri ...
(shown at bottom left in the schematic karyogram, to scale compared to the nuclear DNA), although this is not included in micrographic karyograms in clinical practice. Its genome is relatively tiny compared to the rest.
Copy number

Schematic karyograms generally display a DNA copy number corresponding to the
G0 phase of the cellular state (outside of the replicative
cell cycle) which is the most common state of cells. The schematic karyogram in this section also shows this state. In this state (as well as during the G
1 phase of the
cell cycle), each cell has 2 autosomal chromosomes of each kind (designated 2n), where each chromosome has one copy of each
locus, making a total copy number of 2 for each locus (2c). At top center in the schematic karyogram, it also shows the chromosome 3 pair after having undergone
DNA synthesis, occurring in the
S phase
S phase (Synthesis Phase) is the phase of the cell cycle in which DNA is replicated, occurring between G1 phase and G2 phase. Since accurate duplication of the genome is critical to successful cell division, the processes that occur during ...
(annotated as S) of the cell cycle. This interval includes the
G2 phase and
metaphase (annotated as "Meta."). During this interval, there is still 2n, but each chromosome will have 2 copies of each locus, wherein each
sister chromatid (chromosome arm) is connected at the centromere, for a total of 4c.
[ ] The chromosomes on micrographic karyograms are in this state as well, because they are generally micrographed in metaphase, but during this phase the two copies of each chromosome are so close to each other that they appear as one unless the image resolution is high enough to distinguish them. In reality, during the G
0 and G
1 phases, nuclear DNA is dispersed as
chromatin and does not show visually distinguishable chromosomes even on micrography.
The copy number of the
human mitochondrial genome
Human mitochondrial genetics is the study of the genetics of human mitochondrial DNA (the DNA contained in human mitochondria). The human mitochondrial genome is the entirety of hereditary information contained in human mitochondria. Mitochondri ...
per human cell varies from 0 (erythrocytes)
[ ] up to 1,500,000 (
oocytes), mainly depending on the number of mitochondria per cell.
[ ]
Diversity and evolution of karyotypes
Although the
replication
Replication may refer to:
Science
* Replication (scientific method), one of the main principles of the scientific method, a.k.a. reproducibility
** Replication (statistics), the repetition of a test or complete experiment
** Replication crisi ...
and
transcription of
DNA is highly standardized in
eukaryotes
Eukaryotes () are organisms whose cells have a nucleus. All animals, plants, fungi, and many unicellular organisms, are Eukaryotes. They belong to the group of organisms Eukaryota or Eukarya, which is one of the three domains of life. Bacte ...
, the same cannot be said for their karyotypes, which are highly variable. There is variation between species in chromosome number, and in detailed organization, despite their construction from the same
macromolecules. This variation provides the basis for a range of studies in evolutionary
cytology.
In some cases there is even significant variation within species. In a review, Godfrey and Masters conclude:
Although much is known about karyotypes at the descriptive level, and it is clear that changes in karyotype organization has had effects on the evolutionary course of many species, it is quite unclear what the general significance might be.
Changes during development
Instead of the usual gene repression, some organisms go in for large-scale elimination of
heterochromatin
Heterochromatin is a tightly packed form of DNA or '' condensed DNA'', which comes in multiple varieties. These varieties lie on a continue between the two extremes of constitutive heterochromatin and facultative heterochromatin. Both play a role ...
, or other kinds of visible adjustment to the karyotype.
* Chromosome elimination. In some species, as in many
sciarid flies, entire chromosomes are eliminated during development.
* Chromatin diminution (founding father:
Theodor Boveri). In this process, found in some
copepods
Copepods (; meaning "oar-feet") are a group of small crustaceans found in nearly every freshwater and saltwater habitat. Some species are planktonic (inhabiting sea waters), some are benthic (living on the ocean floor), a number of species have p ...
and
roundworms such as ''
Ascaris suum'', portions of the chromosomes are cast away in particular cells. This process is a carefully organised genome rearrangement where new telomeres are constructed and certain heterochromatin regions are lost. In ''A. suum'', all the somatic cell precursors undergo chromatin diminution.
*
X-inactivation. The inactivation of one X chromosome takes place during the early development of mammals (see
Barr body and
dosage compensation). In
placental mammals, the inactivation is random as between the two Xs; thus the mammalian female is a mosaic in respect of her X chromosomes. In
marsupials
Marsupials are any members of the mammalian infraclass Marsupialia. All extant marsupials are endemic to Australasia, Wallacea and the Americas. A distinctive characteristic common to most of these species is that the young are carried in a po ...
it is always the paternal X which is inactivated. In human females some 15% of somatic cells escape inactivation, and the number of genes affected on the inactivated X chromosome varies between cells: in
fibroblast
A fibroblast is a type of cell (biology), biological cell that synthesizes the extracellular matrix and collagen, produces the structural framework (Stroma (tissue), stroma) for animal Tissue (biology), tissues, and plays a critical role in wound ...
cells up about 25% of genes on the Barr body escape inactivation.
Number of chromosomes in a set
A spectacular example of variability between closely related species is the
muntjac, which was investigated by
Kurt Benirschke
Kurt Benirschke (May 26, 1924 – September 10, 2018) was a German-American pathologist, geneticist and expert on the placenta and reproduction in humans and myriad mammalian species. At the San Diego Zoo, he created the world's first frozen zoo ...
and
Doris Wurster. The diploid number of the Chinese muntjac, ''
Muntiacus reevesi
Reeves's muntjac (''Muntiacus reevesi''; ), also known as the Chinese muntjac, is a muntjac species found widely in southeastern China (from Gansu to Yunnan) and Taiwan. It has also been introduced in Europe, western United States and Japan. It ...
'', was found to be 46, all
telocentric. When they looked at the karyotype of the closely related Indian muntjac, ''
Muntiacus muntjak'', they were astonished to find it had female = 6, male = 7 chromosomes.
The number of chromosomes in the karyotype between (relatively) unrelated species is hugely variable. The low record is held by the
nematode
The nematodes ( or grc-gre, Νηματώδη; la, Nematoda) or roundworms constitute the phylum Nematoda (also called Nemathelminthes), with plant-Parasitism, parasitic nematodes also known as eelworms. They are a diverse animal phylum inhab ...
''
Parascaris univalens
''Parascaris univalens'' is a parasitic ascaridoid nematode that infects the gastrointestinal tracts of equines.
Taxonomy
''P. univalens'' is morphologically identical to ''Parascaris equorum'', the only other species in the genus. The specie ...
'', where the
haploid
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively ...
n = 1; and an ant: ''
Myrmecia pilosula''. The high record would be somewhere amongst the
ferns, with the adder's tongue fern ''
Ophioglossum'' ahead with an average of 1262 chromosomes. Top score for animals might be the
shortnose sturgeon ''
Acipenser brevirostrum
The shortnose sturgeon (''Acipenser brevirostrum'') is a small and endangered species of North American sturgeon. The earliest remains of the species are from the Late Cretaceous Period, over 70 million years ago.National Oceanic and Atmospheri ...
'' at 372 chromosomes.
The existence of supernumerary or
B chromosomes
In addition to the normal karyotype, wild populations of many animal, plant, and fungi species contain B chromosomes (also known as supernumerary, accessory, (conditionally-)dispensable, or lineage-specific chromosomes). By definition, these chr ...
means that chromosome number can vary even within one interbreeding population; and
aneuploids are another example, though in this case they would not be regarded as normal members of the population.
Fundamental number
The fundamental number, ''FN'', of a karyotype is the number of visible major chromosomal arms per set of chromosomes.
Thus, FN ≤ 2 x 2n, the difference depending on the number of chromosomes considered single-armed (
acrocentric or
telocentric) present. Humans have FN = 82,
due to the presence of five acrocentric chromosome pairs:
13,
14,
15,
21, and
22 (the human
Y chromosome is also acrocentric). The fundamental autosomal number or autosomal fundamental number, ''FNa''
or ''AN'',
of a karyotype is the number of visible major chromosomal arms per set of
autosome
An autosome is any chromosome that is not a sex chromosome. The members of an autosome pair in a diploid cell have the same morphology, unlike those in allosome, allosomal (sex chromosome) pairs, which may have different structures. The DNA in au ...
s (non-
sex-linked chromosomes).
Ploidy
Ploidy
Ploidy () is the number of complete sets of chromosomes in a cell (biology), cell, and hence the number of possible alleles for Autosome, autosomal and Pseudoautosomal region, pseudoautosomal genes. Sets of chromosomes refer to the number of mat ...
is the number of complete sets of chromosomes in a cell.
*
Polyploidy, where there are more than two sets of homologous chromosomes in the cells, occurs mainly in plants. It has been of major significance in plant evolution according to
Stebbins. The proportion of flowering plants which are polyploid was estimated by Stebbins to be 30–35%, but in grasses the average is much higher, about 70%. Polyploidy in lower plants (
ferns,
horsetails and
psilotales) is also common, and some species of ferns have reached levels of polyploidy far in excess of the highest levels known in flowering plants. Polyploidy in animals is much less common, but it has been significant in some groups.
Polyploid series in related species which consist entirely of multiples of a single basic number are known as
euploid.
*
Haplo-diploidy, where one sex is
diploid
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively ...
, and the other
haploid
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively ...
. It is a common arrangement in the
Hymenoptera
Hymenoptera is a large order (biology), order of insects, comprising the sawfly, sawflies, wasps, bees, and ants. Over 150,000 living species of Hymenoptera have been described, in addition to over 2,000 extinct ones. Many of the species are Par ...
, and in some other groups.
*
Endopolyploidy occurs when in adult
differentiated tissues the cells have ceased to divide by
mitosis
In cell biology, mitosis () is a part of the cell cycle in which replicated chromosomes are separated into two new nuclei. Cell division by mitosis gives rise to genetically identical cells in which the total number of chromosomes is mainta ...
, but the
nuclei contain more than the original
somatic
Somatic may refer to:
* Somatic (biology), referring to the cells of the body in contrast to the germ line cells
** Somatic cell, a non-gametic cell in a multicellular organism
* Somatic nervous system, the portion of the vertebrate nervous sys ...
number of
chromosomes. In the ''endocycle'' (
endomitosis
In cell biology, mitosis () is a part of the cell cycle in which replicated chromosomes are separated into two new nuclei. Cell division by mitosis gives rise to genetically identical cells in which the total number of chromosomes is maintai ...
or
endoreduplication) chromosomes in a 'resting' nucleus undergo
reduplication
In linguistics, reduplication is a morphological process in which the root or stem of a word (or part of it) or even the whole word is repeated exactly or with a slight change.
The classic observation on the semantics of reduplication is Edwa ...
, the daughter chromosomes separating from each other inside an ''intact''
nuclear membrane.
In many instances, endopolyploid nuclei contain tens of thousands of chromosomes (which cannot be exactly counted). The cells do not always contain exact multiples (powers of two), which is why the simple definition 'an increase in the number of chromosome sets caused by replication without cell division' is not quite accurate.
This process (especially studied in insects and some higher plants such as maize) may be a developmental strategy for increasing the productivity of tissues which are highly active in biosynthesis.
The phenomenon occurs sporadically throughout the
eukaryote
Eukaryotes () are organisms whose cells have a nucleus. All animals, plants, fungi, and many unicellular organisms, are Eukaryotes. They belong to the group of organisms Eukaryota or Eukarya, which is one of the three domains of life. Bacte ...
kingdom from
protozoa
Protozoa (singular: protozoan or protozoon; alternative plural: protozoans) are a group of single-celled eukaryotes, either free-living or parasitic, that feed on organic matter such as other microorganisms or organic tissues and debris. Histo ...
to humans; it is diverse and complex, and serves
differentiation and
morphogenesis in many ways.
* See
palaeopolyploidy for the investigation of ancient karyotype duplications.
Aneuploidy
Aneuploidy is the condition in which the chromosome number in the cells is not the typical number for the species. This would give rise to a
chromosome abnormality such as an extra chromosome or one or more chromosomes lost. Abnormalities in chromosome number usually cause a defect in development.
Down syndrome and
Turner syndrome are examples of this.
Aneuploidy may also occur within a group of closely related species. Classic examples in plants are the genus ''
Crepis'', where the gametic (= haploid) numbers form the series x = 3, 4, 5, 6, and 7; and ''
Crocus'', where every number from x = 3 to x = 15 is represented by at least one species. Evidence of various kinds shows that trends of evolution have gone in different directions in different groups. In primates, the
great apes have 24x2 chromosomes whereas humans have 23x2.
Human chromosome 2
Chromosome 2 is one of the twenty-three pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 2 is the second-largest human chromosome, spanning more than 242 million base pairs and representing almost ei ...
was formed by a merger of ancestral chromosomes, reducing the number.
Chromosomal polymorphism
Some species are
polymorphic for different chromosome structural forms. The structural variation may be associated with different numbers of chromosomes in different individuals, which occurs in the ladybird beetle ''
Chilocorus stigma
''Chilocorus stigma'', commonly known as the twice-stabbed ladybug, is a native resident of the United States and Canada but does not live west of the Sierra Nevada.. It also has been introduced to Hawaii. It is shiny black, and there is one red ...
'', some
mantids of the genus ''
Ameles'', the European shrew ''
Sorex araneus''. There is some evidence from the case of the
mollusc
Mollusca is the second-largest phylum of invertebrate animals after the Arthropoda, the members of which are known as molluscs or mollusks (). Around 85,000 extant species of molluscs are recognized. The number of fossil species is esti ...
''
Thais lapillus
The dog whelk, dogwhelk, or Atlantic dogwinkle (''Nucella lapillus'') is a species of predatory sea snail, a carnivorous marine gastropod in the family Muricidae, the rock snails.
''Nucella lapillus'' was originally described by Carl Linnaeus in ...
'' (the
dog whelk) on the
Brittany coast, that the two chromosome morphs are
adapted to different habitats.
Species trees
The detailed study of chromosome banding in insects with
polytene chromosomes can reveal relationships between closely related species: the classic example is the study of chromosome banding in
Hawaiian drosophilids by
Hampton L. Carson.
In about , the
Hawaiian Islands
The Hawaiian Islands ( haw, Nā Mokupuni o Hawai‘i) are an archipelago of eight major islands, several atolls, and numerous smaller islets in the North Pacific Ocean, extending some from the island of Hawaii in the south to northernmost Kur ...
have the most diverse collection of drosophilid flies in the world, living from
rainforests to
subalpine meadows. These roughly 800 Hawaiian drosophilid species are usually assigned to two genera, ''
Drosophila'' and ''
Scaptomyza
''Scaptomyza'' is a genus of vinegar flies, insects in the family Drosophilidae. , there are 273 described species of ''Scaptomyza''. Of those, 148 are endemic to the Hawaiian archipelago. This genus is part of the species-rich lineage of Hawaiian ...
'', in the family
Drosophilidae.
The polytene banding of the 'picture wing' group, the best-studied group of Hawaiian drosophilids, enabled Carson to work out the evolutionary tree long before genome analysis was practicable. In a sense, gene arrangements are visible in the banding patterns of each chromosome. Chromosome rearrangements, especially
inversions, make it possible to see which species are closely related.
The results are clear. The inversions, when plotted in tree form (and independent of all other information), show a clear "flow" of species from older to newer islands. There are also cases of colonization back to older islands, and skipping of islands, but these are much less frequent. Using
K-Ar dating, the present islands date from 0.4 million years ago (mya) (
Mauna Kea
Mauna Kea ( or ; ; abbreviation for ''Mauna a Wākea''); is a dormant volcano on the island of Hawaii. Its peak is above sea level, making it the highest point in the state of Hawaii and second-highest peak of an island on Earth. The peak is ...
) to 10mya (
Necker). The oldest member of the Hawaiian archipelago still above the sea is
Kure Atoll, which can be dated to 30 mya. The archipelago itself (produced by the
Pacific plate
The Pacific Plate is an oceanic tectonic plate that lies beneath the Pacific Ocean. At , it is the largest tectonic plate.
The plate first came into existence 190 million years ago, at the triple junction between the Farallon, Phoenix, and Iza ...
moving over a
hot spot
Hotspot, Hot Spot or Hot spot may refer to:
Places
* Hot Spot, Kentucky, a community in the United States
Arts, entertainment, and media Fictional entities
* Hot Spot (comics), a name for the DC Comics character Isaiah Crockett
* Hot Spot (Tra ...
) has existed for far longer, at least into the
Cretaceous. Previous islands now beneath the sea (
guyots) form the
Emperor Seamount Chain
An emperor (from la, imperator, via fro, empereor) is a monarch, and usually the sovereign ruler of an empire or another type of imperial realm. Empress, the female equivalent, may indicate an emperor's wife ( empress consort), mother (em ...
.
All of the native ''Drosophila'' and ''Scaptomyza'' species in Hawaii have apparently descended from a single ancestral species that colonized the islands, probably 20 million years ago. The subsequent
adaptive radiation was spurred by a lack of
competition and a wide variety of
niches. Although it would be possible for a single
gravid female to colonise an island, it is more likely to have been a group from the same species.
There are other animals and plants on the Hawaiian archipelago which have undergone similar, if less spectacular, adaptive radiations.
Chromosome banding
Chromosomes display a banded pattern when treated with some stains. Bands are alternating light and dark stripes that appear along the lengths of chromosomes. Unique banding patterns are used to identify chromosomes and to diagnose chromosomal aberrations, including chromosome breakage, loss, duplication, translocation or inverted segments. A range of different chromosome treatments produce a range of banding patterns: G-bands, R-bands, C-bands, Q-bands, T-bands and NOR-bands.
Depiction of karyotypes
Types of banding
Cytogenetics employs several techniques to visualize different aspects of chromosomes:
*
G-banding is obtained with
Giemsa stain following digestion of chromosomes with
trypsin. It yields a series of lightly and darkly stained bands — the dark regions tend to be heterochromatic, late-replicating and AT rich. The light regions tend to be euchromatic, early-replicating and GC rich. This method will normally produce 300–400 bands in a normal,
human genome. It is the most common chromosome banding method.
* R-banding is the reverse of G-banding (the R stands for "reverse"). The dark regions are euchromatic (guanine-cytosine rich regions) and the bright regions are heterochromatic (thymine-adenine rich regions).
* C-banding: Giemsa binds to
constitutive heterochromatin, so it stains
centromeres. The name is derived from centromeric or constitutive heterochromatin. The preparations undergo alkaline denaturation prior to staining leading to an almost complete depurination of the DNA. After washing the probe the remaining DNA is renatured again and stained with Giemsa solution consisting of methylene azure, methylene violet, methylene blue, and eosin. Heterochromatin binds a lot of the dye, while the rest of the chromosomes absorb only little of it. The C-bonding proved to be especially well-suited for the characterization of plant chromosomes.
* Q-banding is a
fluorescent pattern obtained using
quinacrine for staining. The pattern of bands is very similar to that seen in G-banding. They can be recognized by a yellow fluorescence of differing intensity. Most part of the stained DNA is heterochromatin. Quinacrin (atebrin) binds both regions rich in AT and in GC, but only the AT-quinacrin-complex fluoresces. Since regions rich in AT are more common in heterochromatin than in euchromatin, these regions are labelled preferentially. The different intensities of the single bands mirror the different contents of AT. Other fluorochromes like DAPI or Hoechst 33258 lead also to characteristic, reproducible patterns. Each of them produces its specific pattern. In other words: the properties of the bonds and the specificity of the fluorochromes are not exclusively based on their affinity to regions rich in AT. Rather, the distribution of AT and the association of AT with other molecules like histones, for example, influences the binding properties of the fluorochromes.
* T-banding: visualize
telomeres.
* Silver staining:
Silver nitrate stains the
nucleolar organization region ]
Nucleolus organizer regions (NORs) are chromosome, chromosomal regions crucial for the formation of the nucleolus. In humans, the NORs are located on the short arms of the acrocentric chromosomes 13, 14, 15, 21 and 22, the genes RNR1, RNR2, RNR3, ...
-associated protein. This yields a dark region where the silver is deposited, denoting the activity of rRNA genes within the NOR.
Classic karyotype cytogenetics

In the "classic" (depicted) karyotype, a
dye
A dye is a colored substance that chemically bonds to the substrate to which it is being applied. This distinguishes dyes from pigments which do not chemically bind to the material they color. Dye is generally applied in an aqueous solution an ...
, often
Giemsa ''(G-banding)'', less frequently
Mepacrine, mepacrine (quinacrine), is used to stain bands on the chromosomes. Giemsa is specific for the
phosphate groups of
DNA. Quinacrine binds to the
adenine-
thymine-rich regions. Each chromosome has a characteristic banding pattern that helps to identify them; both chromosomes in a pair will have the same banding pattern.
Karyotypes are arranged with the short arm of the chromosome on top, and the long arm on the bottom. Some karyotypes call the short and long arms ''p'' and ''q'', respectively. In addition, the differently stained regions and sub-regions are given numerical designations from
proximal to
distal
Standard anatomical terms of location are used to unambiguously describe the anatomy of animals, including humans. The terms, typically derived from Latin or Greek roots, describe something in its standard anatomical position. This position pro ...
on the chromosome arms. For example,
Cri du chat syndrome involves a deletion on the short arm of chromosome 5. It is written as 46,XX,5p-. The critical region for this syndrome is deletion of p15.2 (the
locus on the chromosome), which is written as 46,XX,del(5)(p15.2).
Multicolor FISH (mFISH) and spectral karyotype (SKY technique)

Multicolor
FISH and the older spectral karyotyping are molecular
cytogenetic techniques used to simultaneously visualize all the pairs of
chromosomes in an organism in different colors.
Fluorescently labeled probes for each chromosome are made by labeling chromosome-specific DNA with different
fluorophores. Because there are a limited number of spectrally distinct fluorophores, a combinatorial labeling method is used to generate many different colors. Fluorophore combinations are captured and analyzed by a fluorescence microscope using up to 7 narrow-banded fluorescence filters or, in the case of spectral karyotyping, by using an
interferometer
Interferometry is a technique which uses the ''interference'' of superimposed waves to extract information. Interferometry typically uses electromagnetic waves and is an important investigative technique in the fields of astronomy, fiber op ...
attached to a fluorescence microscope. In the case of an mFISH image, every combination of fluorochromes from the resulting original images is replaced by a
pseudo color in a dedicated image analysis software. Thus, chromosomes or chromosome sections can be visualized and identified, allowing for the analysis of chromosomal rearrangements.
In the case of spectral karyotyping, image processing software assigns a
pseudo color to each spectrally different combination, allowing the visualization of the individually colored chromosomes.
Multicolor FISH is used to identify structural chromosome aberrations in cancer cells and other disease conditions when Giemsa banding or other techniques are not accurate enough.
Digital karyotyping
''Digital karyotyping'' is a technique used to quantify the DNA copy number on a genomic scale. Short sequences of DNA from specific loci all over the genome are isolated and enumerated. This method is also known as
virtual karyotyping. Using this technique, it is possible to detect small alterations in the human genome, that cannot be detected through methods employing metaphase chromosomes. Some loci deletions are known to be related to the development of cancer. Such deletions are found through digital karyotyping using the loci associated with cancer development.
Chromosome abnormalities
Chromosome abnormalities can be numerical, as in the presence of extra or missing chromosomes, or structural, as in
derivative chromosome A derivative chromosome (der) is a structurally rearranged chromosome generated either by a chromosome rearrangement involving two or more chromosomes or by multiple chromosome aberrations within a single chromosome (e.g. an inversion and a deletio ...
,
translocations,
inversions, large-scale deletions or duplications. Numerical abnormalities, also known as
aneuploidy, often occur as a result of
nondisjunction during
meiosis in the formation of a
gamete;
trisomies, in which three copies of a chromosome are present instead of the usual two, are common numerical abnormalities. Structural abnormalities often arise from errors in
homologous recombination. Both types of abnormalities can occur in gametes and therefore will be present in all cells of an affected person's body, or they can occur during
mitosis
In cell biology, mitosis () is a part of the cell cycle in which replicated chromosomes are separated into two new nuclei. Cell division by mitosis gives rise to genetically identical cells in which the total number of chromosomes is mainta ...
and give rise to a
genetic mosaic
Mosaicism or genetic mosaicism is a condition in multicellular organisms in which a single organism possesses more than one genetic line as the result of genetic mutation. This means that various genetic lines resulted from a single fertilized ...
individual who has some normal and some abnormal cells.
In humans
Chromosomal abnormalities that lead to disease in humans include
*
Turner syndrome results from a single X chromosome (45,X or 45,X0).
*
Klinefelter syndrome, the most common male chromosomal disease, otherwise known as 47,XXY, is caused by an extra X chromosome.
*
Edwards syndrome is caused by
trisomy (three copies) of chromosome 18.
*
Down syndrome, a common chromosomal disease, is caused by trisomy of chromosome 21.
*
Patau syndrome is caused by trisomy of chromosome 13.
*
Trisomy 9, believed to be the 4th most common trisomy, has many long lived affected individuals but only in a form other than a full trisomy, such as trisomy 9p syndrome or mosaic trisomy 9. They often function quite well, but tend to have trouble with speech.
* Also documented are trisomy 8 and trisomy 16, although they generally do not survive to birth.
Some disorders arise from loss of just a piece of one chromosome, including
*
Cri du chat (cry of the cat), from a truncated short arm on chromosome 5. The name comes from the babies' distinctive cry, caused by abnormal formation of the larynx.
*
1p36 Deletion syndrome
1p36 deletion syndrome is a congenital genetic disorder characterized by moderate to severe intellectual disability, delayed growth, hypotonia, seizures, limited speech ability, malformations, hearing and vision impairment, and distinct facial fe ...
, from the loss of part of the short arm of chromosome 1.
*
Angelman syndrome
Angelman syndrome or Angelman's syndrome (AS) is a genetic disorder that mainly affects the nervous system. Symptoms include a small head and a specific facial appearance, severe intellectual disability, developmental disability, limited to no f ...
– 50% of cases have a segment of the long arm of chromosome 15 missing; a deletion of the maternal genes, example of
imprinting disorder.
*
Prader-Willi syndrome – 50% of cases have a segment of the long arm of chromosome 15 missing; a deletion of the paternal genes, example of imprinting disorder.
* Chromosomal abnormalities can also occur in
cancerous cells of an otherwise genetically normal individual; one well-documented example is the
Philadelphia chromosome, a translocation mutation commonly associated with
chronic myelogenous leukemia
Chronic myelogenous leukemia (CML), also known as chronic myeloid leukemia, is a cancer of the white blood cells. It is a form of leukemia characterized by the increased and unregulated growth of myeloid cells in the bone marrow and the accumulat ...
and less often with
acute lymphoblastic leukemia
Acute lymphoblastic leukemia (ALL) is a cancer of the lymphoid line of blood cells characterized by the development of large numbers of immature lymphocytes. Symptoms may include feeling tired, pale skin color, fever, easy bleeding or bruisin ...
.
History of karyotype studies
Chromosomes were first observed in plant cells by
Carl Wilhelm von Nägeli in 1842. Their behavior in animal (
salamander) cells was described by
Walther Flemming, the discoverer of
mitosis
In cell biology, mitosis () is a part of the cell cycle in which replicated chromosomes are separated into two new nuclei. Cell division by mitosis gives rise to genetically identical cells in which the total number of chromosomes is mainta ...
, in 1882. The name was coined by another German anatomist,
Heinrich von Waldeyer in 1888. It is
New Latin from
Ancient Greek κάρυον ''karyon'', "kernel", "seed", or "nucleus", and τύπος ''typos'', "general form")
The next stage took place after the development of genetics in the early 20th century, when it was appreciated that chromosomes (that can be observed by karyotype) were the carrier of genes. The term karyotype as defined by the
phenotypic appearance of the
somatic
Somatic may refer to:
* Somatic (biology), referring to the cells of the body in contrast to the germ line cells
** Somatic cell, a non-gametic cell in a multicellular organism
* Somatic nervous system, the portion of the vertebrate nervous sys ...
chromosomes, in contrast to their
genic contents was introduced by
Grigory Levitsky
Grigory Andreevich Levitsky (19 November 1878 – 20 May 1942) was a Russian and Soviet plant cytogeneticist. He worked along with Nikolai Vavilov who examined the role of mitochondria in plant heredity while also studying polyploidy and mutations. ...
who worked with Lev Delaunay,
Sergei Navashin, and
Nikolai Vavilov. The subsequent history of the concept can be followed in the works of
C. D. Darlington
Cyril Dean Darlington (19 December 1903 – 26 March 1981) was an English biologist, cytologist, geneticist and eugenicist, who discovered the mechanics of chromosomal crossover, its role in inheritance, and therefore its importance to evoluti ...
and
Michael JD White
Michael James Denham White FRS (London, 20 August 1910 – Canberra, 16 December 1983) was a zoologist and cytologist.
White grew up in Tuscany, Italy, where he was home-schooled, before beginning undergraduate studies at University College Lo ...
.
[White M.J.D. 1973. ''Animal cytology and evolution''. 3rd ed, Cambridge University Press.]
Investigation into the human karyotype took many years to settle the most basic question: how many chromosomes does a normal
diploid
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively ...
human cell contain? In 1912,
Hans von Winiwarter
Hans may refer to:
__NOTOC__ People
* Hans (name), a masculine given name
* Hans Raj Hans, Indian singer and politician
** Navraj Hans, Indian singer, actor, entrepreneur, cricket player and performer, son of Hans Raj Hans
** Yuvraj Hans, Punjabi ...
reported 47 chromosomes in
spermatogonia and 48 in
oogonia, concluding an
XX/XO sex determination mechanism.
Painter
Painting is the practice of applying paint, pigment, color or other medium to a solid surface (called the "matrix" or "support"). The medium is commonly applied to the base with a brush, but other implements, such as knives, sponges, and ai ...
in 1922 was not certain whether the diploid of humans was 46 or 48, at first favoring 46, but revised his opinion from 46 to 48, and he correctly insisted on humans having an
XX/XY
''XX/XY'' is a 2002 American romantic drama film written and directed by Austin Chick and starring Mark Ruffalo, Kathleen Robertson, and Maya Stange. The title refers to the different chromosome pairings present in men and women. XX/XY premier ...
system. Considering the techniques of the time, these results were remarkable.
Joe Hin Tjio working in
Albert Levan's lab found the chromosome count to be 46 using new techniques available at the time:
# Using cells in
tissue culture
# Pretreating cells in a
hypotonic solution
In chemical biology, tonicity is a measure of the effective osmotic pressure gradient; the water potential of two solutions separated by a partially-permeable cell membrane. Tonicity depends on the relative concentration of selective membrane-i ...
, which swells them and spreads the chromosomes
# Arresting
mitosis
In cell biology, mitosis () is a part of the cell cycle in which replicated chromosomes are separated into two new nuclei. Cell division by mitosis gives rise to genetically identical cells in which the total number of chromosomes is mainta ...
in
metaphase by a solution of
colchicine
# Squashing the preparation on the slide forcing the chromosomes into a single plane
# Cutting up a photomicrograph and arranging the result into an indisputable karyogram.
The work took place in 1955, and was published in 1956. The karyotype of humans includes only 46 chromosomes.
[Hsu T.C. 1979. ''Human and mammalian cytogenetics: a historical perspective''. Springer-Verlag, NY.] The other
great apes have 48 chromosomes.
Human chromosome 2
Chromosome 2 is one of the twenty-three pairs of chromosomes in humans. People normally have two copies of this chromosome. Chromosome 2 is the second-largest human chromosome, spanning more than 242 million base pairs and representing almost ei ...
is now known to be a result of an end-to-end fusion of two ancestral ape chromosomes.
[Human chromosome 2 is a fusion of two ancestral. chromosomes](_blank)
Alec MacAndrew; accessed 18 May 2006.Evidence of common ancestry: human chromosome 2
(video) 2007
See also
*
*
References
External links
*
Making a karyotype
an online activity from the University of Utah's Genetic Science Learning Center.
from the University of Arizona's Biology Project.
from Biology Corner, a resource site for biology and science teachers.
Bjorn Biosystems for Karyotyping and FISH
{{Use dmy dates, date=April 2017
Cell biology
Chromosomes
Cytogenetics
Evolutionary biology
Genetics techniques