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Proteiniclasticum
''Proteiniclasticum'' is a strictly anaerobic and proteolytic genus of bacteria from the family of Clostridiaceae with one known species ('' Proteiniclasticum ruminis''). ''Proteiniclasticum ruminis'' has been isolated from the content of a yak rumen The rumen, also known as a paunch, is the largest stomach compartment in ruminants and the larger part of the reticulorumen, which is the first chamber in the alimentary canal of ruminant animals. The rumen's microbial favoring environment allow .... References Clostridiaceae Bacteria genera Monotypic bacteria genera Taxa described in 2010 {{Firmicutes-stub ...
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Clostridiaceae
The Clostridiaceae are a family of the bacterial class Clostridia, and contain the genus '' Clostridium''. The family Clostridiaceae (scientific name) defined by the taxonomic outline of '' Bergey's Manual of Systematic Bacteriology '' contains as its core the genus '' Clostridium'' (''sensu stricto''), as well as '' Acetivibrio'', '' Acidaminobacter'', ''Alkaliphilus'', ''Anaerobacter'', '' Caloramator'', '' Caloranaerobacter'', '' Coprobacillus'', ''Dorea'', '' Natronincola'', '' Oxobacter'', '' Sarcina'', '' Sporobacter'', '' Thermobrachium'', '' Thermohalobacter'', and '' Tindallia''. The previous inclusion of these additional genera (as seen on the right) in a family Clostridiaceae is based for the most part because the type species of these genera are in many cases phylogenetically related to misclassified species of the genus ''Clostridium''. However, with the exception of ''Anaerobacter'', ''Caloramator'', ''Oxobacter'', ''Sarcina'', and ''Thermobrachium'', these genera f ...
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Bacteria Genera
This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are taken from the GTDB release 07-RS207 (8th April 2022). Phyla {, border="0" style="width: 100%;" ! , - , style="border:0px" valign="top", {, class="wikitable sortable" style="width: 100%; font-size: 95%;" !Syperphylum !Phylum !Authority !Synonyms , - , Parakaryota , , , Myojin parakaryote , - , , " Canglongiota" , Zhang et al. 2022 , , - , , " Fervidibacteria" , , OctSpa1-106 , - , , " Heilongiota" , Zhang et al. 2022 , , - , , " Qinglongiota" , Zhang et al. 2022 , , - , , " Salinosulfoleibacteria" , Tazi et al. 2006 , , - , , " Teskebacteria" , Dojka 1998 , WS1 , - , , " Tharpellota" , Speth et al. 2022 , , - , Terrabacteria , Chloroflexota , Whitman et al. 2018 , " Thermomicrobiota" , - , Terrabacteria , " Dormibacte ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic re ...
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Bacillota
The Bacillota (synonym Firmicutes) are a phylum of bacteria, most of which have gram-positive cell wall structure. The renaming of phyla such as Firmicutes in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature. The name "Firmicutes" was derived from the Latin words for "tough skin," referring to the thick cell wall typical of bacteria in this phylum. Scientists once classified the Firmicutes to include all gram-positive bacteria, but have recently defined them to be of a core group of related forms called the low- G+C group, in contrast to the Actinomycetota. They have round cells, called cocci (singular coccus), or rod-like forms (bacillus). A few Firmicutes, such as '' Megasphaera'', '' Pectinatus'', '' Selenomonas'' and '' Zymophilus'', have a porous pseudo-outer membrane that causes them to stain gram-negative. Many Bacillota (Firmicutes) produce endospores, which are resistant to desiccatio ...
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Clostridia
The Clostridia are a highly polyphyletic class of Bacillota, including '' Clostridium'' and other similar genera. They are distinguished from the Bacilli by lacking aerobic respiration. They are obligate anaerobes and oxygen is toxic to them. Species of the class ''Clostridia'' are often but not always Gram-positive (see '' Halanaerobium'') and have the ability to form spores. Studies show they are not a monophyletic group, and their relationships are not entirely certain. Currently, most are placed in a single order called Clostridiales, but this is not a natural group and is likely to be redefined in the future. Most species of the genus ''Clostridium'' are saprophytic organisms that ferment plant polysaccharides and are found in many places in the environment, most notably the soil. However, the genus does contain some human pathogens (outlined below). The toxins produced by certain members of the genus ''Clostridium'' are among the most dangerous known. Examples are tetan ...
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Clostridiales
The Eubacteriales are an order of bacteria placed within the class Clostridia. Families Eubacteriales comprises the following families: * " Betainaceae" Jones et al. 2019 * " Bianqueaceae" Liu et al. 2021 * " Borkfalkiaceae" Hildebrand, Pallen & Bork 2020 * Caldicoprobacteraceae Yokoyama et al. 2010 * Christensenellaceae Morotomi, Nagai & Watanabe 2012 * Clostridiaceae Pribram 1933 * Defluviitaleaceae Jabari et al. 2012 * Eubacteriaceae Ludwig et al. 2010 * " Feifaniaceae" Liu et al. 2021 * " Galloscillospiraceae" Gilroy et al. 2021 * Gottschalkiaceae Poehlein et al. 2017c * Hungateiclostridiaceae Zhang et al. 2018b * Lachnospiraceae Rainey 2010 * " Mageeibacillaceae" Hildebrand, Pallen & Bork 2020 * " Mogibacteriaceae" Wylensek et al. 2020 * Oscillospiraceae Peshkoff 1940 * Peptoniphilaceae Johnson et al. 2014 * Peptostreptococcaceae Ezaki 2010 * Ruminococcaceae Rainey 2010 * " Pumilibacteraceae" Afrizal et al. 2021 * Thermohalobacteraceae Spring 2021 * Tissierellace ...
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Species
In biology, a species is the basic unit of Taxonomy (biology), classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can reproduction, produce Fertility, fertile offspring, typically by sexual reproduction. Other ways of defining species include their karyotype, DNA sequence, morphology (biology), morphology, behaviour or ecological niche. In addition, paleontologists use the concept of the chronospecies since fossil reproduction cannot be examined. The most recent rigorous estimate for the total number of species of eukaryotes is between 8 and 8.7 million. However, only about 14% of these had been described by 2011. All species (except viruses) are given a binomial nomenclature, two-part name, a "binomial". The first part of a binomial is the genus to which the species belongs. The second part is called the specifi ...
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Anaerobic Organism
An anaerobic organism or anaerobe is any organism that does not require molecular oxygen for growth. It may react negatively or even die if free oxygen is present. In contrast, an aerobic organism (aerobe) is an organism that requires an oxygenated environment. Anaerobes may be unicellular (e.g. protozoans, bacteria) or multicellular. Most fungi are obligate aerobes, requiring oxygen to survive. However, some species, such as the Chytridiomycota that reside in the rumen of cattle, are obligate anaerobes; for these species, anaerobic respiration is used because oxygen will disrupt their metabolism or kill them. Deep waters of the ocean are a common anoxic environment. First observation In his letter of 14 June 1680 to The Royal Society, Antonie van Leeuwenhoek described an experiment he carried out by filling two identical glass tubes about halfway with crushed pepper powder, to which some clean rain water was added. Van Leeuwenhoek sealed one of the glass tubes using a flam ...
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Proteolytic
Proteolysis is the breakdown of proteins into smaller polypeptides or amino acids. Uncatalysed, the hydrolysis of peptide bonds is extremely slow, taking hundreds of years. Proteolysis is typically catalysed by cellular enzymes called proteases, but may also occur by intra-molecular digestion. Proteolysis in organisms serves many purposes; for example, digestive enzymes break down proteins in food to provide amino acids for the organism, while proteolytic processing of a polypeptide chain after its synthesis may be necessary for the production of an active protein. It is also important in the regulation of some physiological and cellular processes including apoptosis, as well as preventing the accumulation of unwanted or misfolded proteins in cells. Consequently, abnormality in the regulation of proteolysis can cause disease. Proteolysis can also be used as an analytical tool for studying proteins in the laboratory, and it may also be used in industry, for example in food pro ...
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Rumen
The rumen, also known as a paunch, is the largest stomach compartment in ruminants and the larger part of the reticulorumen, which is the first chamber in the alimentary canal of ruminant animals. The rumen's microbial favoring environment allows it to serve as the primary site for microbial fermentation of ingested feed. The smaller part of the reticulorumen is the reticulum, which is fully continuous with the rumen, but differs from it with regard to the texture of its lining. Brief anatomy The rumen is composed of several muscular sacs, the cranial sac, ventral sac, ventral blindsac, and reticulum. The lining of the rumen wall is covered in small fingerlike projections called papillae, which are flattened, approximately 5mm in length and 3mm wide in cattle. The reticulum is lined with ridges that form a hexagonal honeycomb pattern. The ridges are approximately 0.1–0.2mm wide and are raised 5mm above the reticulum wall. The hexagons in the reticulum are approximatel ...
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Monotypic Bacteria Genera
In biology, a monotypic taxon is a taxonomic group (taxon) that contains only one immediately subordinate taxon. A monotypic species is one that does not include subspecies or smaller, infraspecific taxa. In the case of genera, the term "unispecific" or "monospecific" is sometimes preferred. In botanical nomenclature, a monotypic genus is a genus in the special case where a genus and a single species are simultaneously described. In contrast, an oligotypic taxon contains more than one but only a very few subordinate taxa. Examples Just as the term ''monotypic'' is used to describe a taxon including only one subdivision, the contained taxon can also be referred to as monotypic within the higher-level taxon, e.g. a genus monotypic within a family. Some examples of monotypic groups are: Plants * In the order Amborellales, there is only one family, Amborellaceae and there is only one genus, '' Amborella'', and in this genus there is only one species, namely ''Amborella trichopoda.' ...
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