Squamarinaceae
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The Cladoniaceae are a
family Family (from ) is a Social group, group of people related either by consanguinity (by recognized birth) or Affinity (law), affinity (by marriage or other relationship). It forms the basis for social order. Ideally, families offer predictabili ...
of
lichen A lichen ( , ) is a hybrid colony (biology), colony of algae or cyanobacteria living symbiotically among hypha, filaments of multiple fungus species, along with yeasts and bacteria embedded in the cortex or "skin", in a mutualism (biology), m ...
-forming
fungi A fungus (: fungi , , , or ; or funguses) is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and mold (fungus), molds, as well as the more familiar mushrooms. These organisms are classified as one ...
in the order
Lecanorales The Lecanorales are an order of mostly lichen-forming fungi belonging to the class Lecanoromycetes in the division Ascomycota. The order contains 26 families, 269 genera, and 5695 species. Families Suborder Lecanorineae * Biatorellacea ...
, comprising about 560
species A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), ...
distributed amongst 18
genera Genus (; : genera ) is a taxonomic rank above species and below family as used in the biological classification of living and fossil organisms as well as viruses. In binomial nomenclature, the genus name forms the first part of the binomial s ...
. This family is one of the largest among lichen-forming fungi and is globally distributed, from Arctic
tundra In physical geography, a tundra () is a type of biome where tree growth is hindered by frigid temperatures and short growing seasons. There are three regions and associated types of tundra: #Arctic, Arctic, Alpine tundra, Alpine, and #Antarctic ...
to
tropical The tropics are the regions of Earth surrounding the equator, where the sun may shine directly overhead. This contrasts with the temperate or polar regions of Earth, where the Sun can never be directly overhead. This is because of Earth's ax ...
rainforests, favouring humid environments while being intolerant of arid conditions.
Molecular phylogenetics Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to ...
has significantly advanced the understanding of their complex
taxonomic 280px, Generalized scheme of taxonomy Taxonomy is a practice and science concerned with classification or categorization. Typically, there are two parts to it: the development of an underlying scheme of classes (a taxonomy) and the allocation ...
history, revealing intricate evolutionary relationships and leading to a refined classification. Notable members include
reindeer moss ''Cladonia rangiferina'', also known as reindeer cup lichen, reindeer lichen (cf. Swedish language, Sw. ''renlav'') or grey reindeer lichen, is a light-coloured fruticose lichen, fruticose, Cladonia, cup lichen species in the family Cladoniaceae. ...
and cup lichens of the genus '' Cladonia'', which consist of about 500 species and forms a significant part of the diet for large mammals in
taiga Taiga or tayga ( ; , ), also known as boreal forest or snow forest, is a biome characterized by coniferous forests consisting mostly of pines, spruces, and larches. The taiga, or boreal forest, is the world's largest land biome. In North A ...
and
tundra In physical geography, a tundra () is a type of biome where tree growth is hindered by frigid temperatures and short growing seasons. There are three regions and associated types of tundra: #Arctic, Arctic, Alpine tundra, Alpine, and #Antarctic ...
ecosystems. A distinctive feature of many Cladoniaceae species is their dimorphic
thallus Thallus (: thalli), from Latinized Greek (), meaning "a green shoot" or "twig", is the vegetative tissue of some organisms in diverse groups such as algae, fungi, some liverworts, lichens, and the Myxogastria. A thallus usually names the entir ...
: a scaly or crust-like form and a (shrub-like) secondary form known as a podetium or . These lichens typically grow on soil, decaying wood, or tree trunks, with a few species found on rocks. They form
symbiotic Symbiosis (Ancient Greek : living with, companionship < : together; and ''bíōsis'': living) is any type of a close and long-term biolo ...
associations with
green algae The green algae (: green alga) are a group of chlorophyll-containing autotrophic eukaryotes consisting of the phylum Prasinodermophyta and its unnamed sister group that contains the Chlorophyta and Charophyta/ Streptophyta. The land plants ...
, usually from the genus ''
Asterochloris ''Asterochloris'' is a genus of green algae in the family Trebouxiophyceae. It is a common in lichen, occurring in the thalli of more than 20 lichen genera worldwide. ''Asterochloris'' is distinguishable from the morphologically similar genus ...
''. The family is known for its diverse
secondary metabolite Secondary metabolites, also called ''specialised metabolites'', ''secondary products'', or ''natural products'', are organic compounds produced by any lifeform, e.g. bacteria, archaea, fungi, animals, or plants, which are not directly involved ...
s—over 70 have been identified—which play roles in species identification and ecological functions such as protection against UV radiation and herbivore deterrence.
Genomic Genomics is an interdisciplinary field of molecular biology focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as well as its hierarchical, ...
studies have uncovered significant variation in
mitochondrial DNA Mitochondrial DNA (mtDNA and mDNA) is the DNA located in the mitochondrion, mitochondria organelles in a eukaryotic cell that converts chemical energy from food into adenosine triphosphate (ATP). Mitochondrial DNA is a small portion of the D ...
among Cladoniaceae species, contributing to the understanding of their evolution and diversity. Some Cladoniaceae species have economic value, particularly in decorative uses such as floral arrangements and model-making due to their unique structures. Six species are included in the International Union for Conservation of Nature's Red List of Threatened Species, facing threats from
habitat loss Habitat destruction (also termed habitat loss or habitat reduction) occurs when a natural habitat is no longer able to support its native species. The organisms once living there have either moved elsewhere, or are dead, leading to a decrease ...
,
climate change Present-day climate change includes both global warming—the ongoing increase in Global surface temperature, global average temperature—and its wider effects on Earth's climate system. Climate variability and change, Climate change in ...
, and human activities. Conservation efforts are ongoing to protect these vulnerable species.


Systematics


Historical taxonomy

Before the term 'lichen' was widely adopted, one of the earliest classification systems for these organisms was developed by the German botanist
Johann Jacob Dillenius Johann Jacob Dillen Dillenius (1684 – 2 April 1747) was a German botanist. He is known for his ''Hortus Elthamensis'' ("Eltham Garden") on the rare plants around Eltham, London, and for his ''Historia muscorum'' ("History of Mosses"), a natu ...
. In his 1741 system, ''Cladonia'' species were placed within the genus ''Coralloides''. In his ''
Species Plantarum ' (Latin for "The Species of Plants") is a book by Carl Linnaeus, originally published in 1753, which lists every species of plant known at the time, classified into genus, genera. It is the first work to consistently apply binomial nomenclature ...
'',
Carl Linnaeus Carl Linnaeus (23 May 1707 – 10 January 1778), also known after ennoblement in 1761 as Carl von Linné,#Blunt, Blunt (2004), p. 171. was a Swedish biologist and physician who formalised binomial nomenclature, the modern system of naming o ...
formally described several species that are now classified within the Cladoniaceae. Although he initially placed them in the eponymously named genus ''Lichen'', a dozen of these species are recognised as belonging to the genus ''Cladonia''. Among these was '' Cladonia pyxidata'', a representative of the "pixie cup" or "trumpet" lichens—so named for their distinctive shape, as well as some well-known and widespread ''Cladonia'' species: '' C. coccifera'', '' C. cornuta'', '' C. deformis'', '' C. digitata'', '' C. fimbriata'', '' C. gracilis'', '' C. portentosa'', '' C. rangiferina'', '' C. stellaris'', '' C. subulata'', and '' C. uncialis''. These 12 species represent about 14% of the 80 ''Lichen'' species Linnaeus described in his seminal 1753 work. The German naturalist Jonathan Carl Zenker formally introduced the Cladoniaceae to science in 1827, with his work appearing in a publication edited by
Karl Goebel Karl Immanuel Eberhard Ritter von Goebel FRS FRSE (8 March 1855, Billigheim, Baden Germany, Baden – 9 October 1932, Munich) was a German botanist. His main fields of study were comparative functional anatomy, morphology (biology), morphology, ...
. Zenker's initial concept of the family included genera such as '' Baeomyces'', '' Icmadophila'', and '' Stereocaulon'', which have since been reclassified into separate families due to advances in taxonomic understanding.
William Nylander William Andrew Michael Junior Nylander Altelius (born 1 May 1996) is a Swedish professional ice hockey Forward (ice hockey), forward for the Toronto Maple Leafs of the National Hockey League (NHL). Nylander was selected by the Maple Leafs in t ...
included 53 ''Cladonia'' species worldwide in his 1860 work ''Synopsis lichenum''. When
Edvard August Vainio Edvard August Vainio (born Edvard Lang; 5 August 185314 May 1929) was a Finnish lichenology, lichenologist. His early works on the lichens of Lapland (Finland), Lapland, his three-volume monograph on the lichen genus ''Cladonia'', and, in part ...
published his three-volume
monograph A monograph is generally a long-form work on one (usually scholarly) subject, or one aspect of a subject, typically created by a single author or artist (or, sometimes, by two or more authors). Traditionally it is in written form and published a ...
on the Cladoniaceae (''Monographia Cladoniarum universalis'', 1887, 1894, and 1897), he included 134 species and
subspecies In Taxonomy (biology), biological classification, subspecies (: subspecies) is a rank below species, used for populations that live in different areas and vary in size, shape, or other physical characteristics (Morphology (biology), morpholog ...
. In his
circumscription Circumscription may refer to: * Circumscribed circle * Circumscription (logic) *Circumscription (taxonomy) * Circumscription theory, a theory about the origins of the political state in the history of human evolution proposed by the American anthr ...
of the family, the genera '' Pycnothelia'', '' Cladia'', and ''Cladina'' were included in the genus ''Cladonia''. In recent history, Teuvo Ahti's extensive research, including comprehensive monographs and revisions, has significantly advanced the understanding of Cladoniaceae taxonomy and
biogeography Biogeography is the study of the species distribution, distribution of species and ecosystems in geography, geographic space and through evolutionary history of life, geological time. Organisms and biological community (ecology), communities o ...
. Cladoniaceae is now one of the largest families of lichen-forming fungi, with about 560 species distributed amongst 18 genera. The
type genus In biological taxonomy, the type genus (''genus typica'') is the genus which defines a biological family and the root of the family name. Zoological nomenclature According to the International Code of Zoological Nomenclature, "The name-bearin ...
is '' Cladonia'', circumscribed by the Irish physician and botanist Patrick Browne in 1756. He included eight species in his new genus. Of their occurrence, he wrote: "All these species are found in great abundance in the mountains of Liguanea: they grow mostly on the ground, among other sorts of moss, but a few ... species chiefly are found upon the decaying trunks of trees."


Etymology and naming

As is standard practice in
botanical nomenclature Botanical nomenclature is the formal, scientific naming of plants. It is related to, but distinct from taxonomy (biology), taxonomy. Plant taxonomy is concerned with grouping and classifying plants; Botany, botanical nomenclature then provides na ...
, the name ''Cladoniaceae'' is based on the name of the type genus, ''Cladonia'', with the ending indicating the
rank A rank is a position in a hierarchy. It can be formally recognized—for example, cardinal, chief executive officer, general, professor—or unofficial. People Formal ranks * Academic rank * Corporate title * Diplomatic rank * Hierarchy ...
of family. The genus name comprises the
Greek Greek may refer to: Anything of, from, or related to Greece, a country in Southern Europe: *Greeks, an ethnic group *Greek language, a branch of the Indo-European language family **Proto-Greek language, the assumed last common ancestor of all kno ...
word: (''klādos''), meaning "branch", "bud", or "shoot"; and the
Latin Latin ( or ) is a classical language belonging to the Italic languages, Italic branch of the Indo-European languages. Latin was originally spoken by the Latins (Italic tribe), Latins in Latium (now known as Lazio), the lower Tiber area aroun ...
''-ia'', a
suffix In linguistics, a suffix is an affix which is placed after the stem of a word. Common examples are case endings, which indicate the grammatical case of nouns and adjectives, and verb endings, which form the conjugation of verbs. Suffixes can ca ...
commonly used in Latin to form nouns, particularly in taxonomy to denote genera. It is well known that reindeer feed on lichens, which has led to the widespread but misleading name "reindeer moss". This
common name In biology, a common name of a taxon or organism (also known as a vernacular name, English name, colloquial name, country name, popular name, or farmer's name) is a name that is based on the normal language of everyday life; and is often con ...
, along with "reindeer lichen" and "caribou lichen", is typically applied to the ground-dwelling, mat-forming species that were previously classified in the genus ''
Cladina ''Cladonia'' is a genus of moss-like lichenized fungi in the family (biology), family Cladoniaceae. They are the primary food source for reindeer/caribou. ''Cladonia'' species are of economic importance to reindeer-herders, such as the Sami peop ...
''. ''Cladonia'' species with cup-shaped structures borne at the tips of vertical stalks (podetia) are often known as "pixie cups". Examples include the "boreal pixie cup" ('' C. borealis''), the "finger pixie cup" ('' C. digitata''), and the "red-fruited pixie cup" ('' C. pleurota'') Additional names alluding to these characteristic structures include the "powdered funnel lichen" ('' C. cenotea''), and the "trumpet lichen" ('' C. fimbriata''). Some names reference the reddish hue of their fruiting structures, such as "British soldiers" ('' C. cristatella''), the "jester lichen" ('' C. leporina''), and the "lipstick powderhorn" ('' C. macilenta'').


Phylogenetics

Molecular phylogenetics Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to ...
studies have significantly advanced the scientific understanding of relationships within the Cladoniaceae, particularly in the large and diverse genus ''Cladonia''. Early studies in the early 2000s began to reveal the complexity of relationships within the family, challenging traditional morphology-based classifications. More recent comprehensive analyses have identified 13 major
clade In biology, a clade (), also known as a Monophyly, monophyletic group or natural group, is a group of organisms that is composed of a common ancestor and all of its descendants. Clades are the fundamental unit of cladistics, a modern approach t ...
s within ''Cladonia'', providing a framework for understanding the genus's evolution and diversity. These clades, while generally well-supported by molecular data, often lack clear morphological
synapomorphies In phylogenetics, an apomorphy (or derived trait) is a novel character or character state that has evolved from its ancestral form (or plesiomorphy). A synapomorphy is an apomorphy shared by two or more taxa and is therefore hypothesized to ...
(shared physical characteristics inherited from a
common ancestor Common descent is a concept in evolutionary biology applicable when one species is the ancestor of two or more species later in time. According to modern evolutionary biology, all living beings could be descendants of a unique ancestor commonl ...
), highlighting the challenges in ''Cladonia'' taxonomy. Some clades, such as clade Erythrocarpae (characterised by red apothecia) and clade Ochroleucae (with pale ochraceous apothecia), do share distinctive features. However, most clades encompass a wide range of morphological and chemical variation. Within these clades, several
species complex In biology, a species complex is a group of closely related organisms that are so similar in appearance and other features that the boundaries between them are often unclear. The taxa in the complex may be able to hybridize readily with each oth ...
es have been identified, such as the '' Cladonia gracilis'' group and the '' Cladonia humilis'' group. These complexes often include morphologically similar species that are difficult to distinguish based on traditional taxonomic characters. Molecular studies have revealed that many of these complexes contain cryptic diversity, with genetically distinct lineages that are not easily recognisable morphologically. Focused molecular studies have further refined the understanding of specific groups within Cladoniaceae. For instance, detailed analyses of the '' Cladonia furcata'' complex have revealed high levels of
homoplasy Homoplasy, in biology and phylogenetics, is the term used to describe a feature that has been gained or lost independently in separate lineages over the course of evolution. This is different from homology, which is the term used to characterize ...
(the occurrence of similar traits due to
convergent evolution Convergent evolution is the independent evolution of similar features in species of different periods or epochs in time. Convergent evolution creates analogous structures that have similar form or function but were not present in the last comm ...
rather than shared ancestry) in the morphological characters traditionally used for species delimitation. Similarly, studies on the '' Cladonia cariosa'' group and the '' Cladonia pyxidata'' group have uncovered previously unrecognised diversity and highlighted the need for integrative approaches combining molecular, morphological, and chemical data in species delimitation. These phylogenetic studies have also shed light on biogeographic patterns within Cladoniaceae. For example, some clades show distinct geographic distributions, such as a group of predominantly African species within clade Perviae, while others have more
cosmopolitan distribution In biogeography, a cosmopolitan distribution is the range of a taxon that extends across most or all of the surface of the Earth, in appropriate habitats; most cosmopolitan species are known to be highly adaptable to a range of climatic and en ...
s. Morphologically distinct genera like ''Carassea'', ''Pycnothelia'', and ''Metus'' form a sister clade to ''Cladonia''. These genera share some morphological and chemical traits, such as dimorphic thalli and the production of atranorin. However, their geographic distributions vary, with ''Carassea'' being
endemic Endemism is the state of a species being found only in a single defined geographic location, such as an island, state, nation, country or other defined zone; organisms that are indigenous to a place are not endemic to it if they are also foun ...
to Brazil, while ''Pycnothelia'' has a bipolar distribution (i.e., found in the high latitudes of both hemispheres) and ''Metus'' is found primarily in Australasia.


Genomics

Genomic Genomics is an interdisciplinary field of molecular biology focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as well as its hierarchical, ...
studies have revealed significant variation in the size and structure of
mitochondrial DNA Mitochondrial DNA (mtDNA and mDNA) is the DNA located in the mitochondrion, mitochondria organelles in a eukaryotic cell that converts chemical energy from food into adenosine triphosphate (ATP). Mitochondrial DNA is a small portion of the D ...
in Cladoniaceae, uncovering significant variation in
genome A genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as ...
size and structure. Within the genus ''Cladonia'', mitochondrial genomes span from approximately 45,000 to 66,000
base pair A base pair (bp) is a fundamental unit of double-stranded nucleic acids consisting of two nucleobases bound to each other by hydrogen bonds. They form the building blocks of the DNA double helix and contribute to the folded structure of both DNA ...
s, consistently containing
respiratory The respiratory system (also respiratory apparatus, ventilatory system) is a biological system consisting of specific organs and structures used for gas exchange in animals and plants. The anatomy and physiology that make this happen varies gr ...
genes and
ribosomal RNA Ribosomal ribonucleic acid (rRNA) is a type of non-coding RNA which is the primary component of ribosomes, essential to all cells. rRNA is a ribozyme which carries out protein synthesis in ribosomes. Ribosomal RNA is transcribed from ribosomal ...
regions across all examined species. Crustose lichens tend to have smaller mitochondrial genomes compared to their fruticose and foliose counterparts. The genomes often harbour
homing endonuclease The homing endonucleases are a collection of endonucleases encoded either as freestanding genes within introns, as fusions with host proteins, or as self-splicing inteins. They catalyze the hydrolysis of genomic DNA within the cells that synthes ...
genes, which may influence genomic evolution. Notably, substantial intraspecific variation has been observed, particularly in widespread species such as ''C. rangiferina'' and ''C. submitis''. Unlike some other symbiotic organisms, Cladoniaceae do not exhibit mitochondrial genome reduction, suggesting complex evolutionary dynamics.


Synonymy

Several
phylogenetic In biology, phylogenetics () is the study of the evolutionary history of life using observable characteristics of organisms (or genes), which is known as phylogenetic inference. It infers the relationship among organisms based on empirical dat ...
studies have shown that Cladoniaceae is a member of the order
Lecanorales The Lecanorales are an order of mostly lichen-forming fungi belonging to the class Lecanoromycetes in the division Ascomycota. The order contains 26 families, 269 genera, and 5695 species. Families Suborder Lecanorineae * Biatorellacea ...
, and is closely related to the family
Stereocaulaceae The Stereocaulaceae are a family of lichen-forming fungi in the order Lecanorales. It contains five genera. Species of this family are widely distributed in temperate boreal and austral regions. Genera *'' Hertelidea'' – 6 spp. *''Lepraria ...
. The family Cetradoniaceae, which was created in 2002 to contain the endangered species '' Cetradonia linearis'', was folded into the Cladoniaceae in 2006. In 2018, Ekaphan Kraichak and colleagues used a technique called temporal banding to reorganise the
Lecanoromycetes Lecanoromycetes is the largest class of lichenized fungi. It belongs to the subphylum Pezizomycotina in the phylum Ascomycota. The asci (spore-bearing cells) of the Lecanoromycetes most often release spores by rostrate dehiscence. The group is ...
, proposing a revised system of classification based on correlating taxonomic rank with geological (evolutionary) age. They synonymised the families Squamarinaceae and
Stereocaulaceae The Stereocaulaceae are a family of lichen-forming fungi in the order Lecanorales. It contains five genera. Species of this family are widely distributed in temperate boreal and austral regions. Genera *'' Hertelidea'' – 6 spp. *''Lepraria ...
with the Cladoniaceae, resulting in a large increase in the number of genera and species. The Squamarinaceae had already been included in the Cladoniaceae by previous authors. Although this reorganisation has been used in some later publications, the folding of the Stereocaulaceae into the Cladoniaceae was not accepted in a recent analysis.
Robert Lücking Robert Lücking (born 1964) is a German lichenologist, known for his extensive research on foliicolous lichens (lichens that live on leaves) and his significant contributions to the taxonomy, ecology, and biodiversity of fungi and lichens. He e ...
highlighted that merging the two families under the name Cladoniaceae is not permissible without a formal conservation proposal because Stereocaulaceae, established in 1826, predates Cladoniaceae, which was established in 1827. According to the rules of botanical nomenclature, the earliest validly published name has priority and must be used when two families are combined unless an exception is granted. This means that if the families were merged without a conservation proposal, the combined family would have to be named Stereocaulaceae due to its earlier establishment. In a 2021 treatment of the British and Irish Cladoniaceae, the authors also keep these families separate, noting "both families are monophyletic and easily distinguishable on both morphological and molecular terms".


Description

The
thallus Thallus (: thalli), from Latinized Greek (), meaning "a green shoot" or "twig", is the vegetative tissue of some organisms in diverse groups such as algae, fungi, some liverworts, lichens, and the Myxogastria. A thallus usually names the entir ...
(body) of Cladoniaceae lichens often have a unique structure known as growth, where two distinct forms develop simultaneously within the same organism. The , which can be short-lived () or long-lasting, grows close to the surface and may appear crusty, leafy, or scaly. From this base, a typically grows upright, bearing the reproductive structures (ascomata). This secondary growth can range from a few millimetres to over 25 centimetres (10 inches) in height. Due to this dual structure, the overall appearance of these lichens can be either fruticose (bushy) or foliose (leafy). However, some species in this family do not develop either the primary thallus or the upright structures, showing variations within the group. As for vegetative
propagule In biology, a propagule is any material that functions in propagating an organism to the next stage in its life cycle, such as by dispersal. The propagule is usually distinct in form from the parent organism. Propagules are produced by organisms ...
s,
isidia An isidium (plural: isidia) is a tiny, wart- or finger-like outgrowth on the thallus surface of certain lichen species. It is one of two principal types of vegetative reproduction, vegetative reproductive structures in lichens, the other being ...
occur rarely in this family, whereas
soredia Soredia are common reproduction, reproductive structures of lichens. Lichens asexual reproduction, reproduce asexually by employing simple fragmentation and production of soredia and isidia. Soredia are powdery propagules composed of fungus, fung ...
are common. The ascomata are in the form of an apothecium, and are , meaning they are of the type – light in colour and soft in consistency. They often have a reduced margin. Their colour is typically dark brown (sometimes pale brown), red, ochraceous, or black. The (referring to all
hypha A hypha (; ) is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium. Structure A hypha consists of one o ...
e between the asci in the
hymenium The hymenium is the tissue layer on the hymenophore of a fungal fruiting body where the cells develop into basidia or asci, which produce spores. In some species all of the cells of the hymenium develop into basidia or asci, while in oth ...
) consists of sparsely branched
paraphyses Paraphyses are erect sterile filament-like support structures occurring among the reproductive apparatuses of fungi, ferns, bryophytes and some thallophytes. The singular form of the word is paraphysis. In certain fungi, they are part of the f ...
, and is
amyloid Amyloids are aggregates of proteins characterised by a fibrillar morphology of typically 7–13 nm in diameter, a β-sheet secondary structure (known as cross-β) and ability to be stained by particular dyes, such as Congo red. In the human ...
, indicating that stains blue to blue-black with
iodine Iodine is a chemical element; it has symbol I and atomic number 53. The heaviest of the stable halogens, it exists at standard conditions as a semi-lustrous, non-metallic solid that melts to form a deep violet liquid at , and boils to a vi ...
-based reagents. The asci (spore-bearing cells) are somewhat , meaning they have two layers that separate during ascus dehiscence. The ascus structure consists of an and a tube (both of which are amyloid), which is cylindrical to (club-shaped).
Ascospore In fungi, an ascospore is the sexual spore formed inside an ascus—the sac-like cell that defines the division Ascomycota, the largest and most diverse Division (botany), division of fungi. After two parental cell nucleus, nuclei fuse, the ascu ...
s number eight per ascus, and they are usually non-
septate In biology, a septum (Latin for ''something that encloses''; septa) is a wall, dividing a cavity or structure into smaller ones. A cavity or structure divided in this way may be referred to as septate. Examples Human anatomy * Interatrial se ...
(lacking internal partitions),
ellipsoid An ellipsoid is a surface that can be obtained from a sphere by deforming it by means of directional Scaling (geometry), scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a Surface (mathemat ...
to more or less spherical in shape,
hyaline A hyaline substance is one with a glassy appearance. The word is derived from , and . Histopathology Hyaline cartilage is named after its glassy appearance on fresh gross pathology. On light microscopy of H&E stained slides, the extracellula ...
(translucent), and non-amyloid. Except for a few genera that produce septate ascospores (''Calathaspis'', ''Pycnothelia'' and ''Pilophorus''), the hymenium does not generally have that are useful in taxonomy. The
conidiomata Conidiomata (singular: Conidioma) are blister-like fruiting structures produced by a specific type of fungus called a coelomycete. They are formed as a means of dispersing asexual spores call conidia, which they accomplish by creating the blister- ...
(asexual fruiting bodies) are in the form of
pycnidia A pycnidium (plural pycnidia) is an asexual fruiting body produced by mitosporic fungi, for instance in the order Sphaeropsidales ( Deuteromycota, Coelomycetes) or order Pleosporales (Ascomycota, Dothideomycetes). It is often spherical or inve ...
; the
conidia A conidium ( ; : conidia), sometimes termed an asexual chlamydospore or chlamydoconidium (: chlamydoconidia), is an asexual, non- motile spore of a fungus. The word ''conidium'' comes from the Ancient Greek word for dust, ('). They are also ...
(asexual spores) are non-septate, usually (thread-like), and hyaline.


Chemistry

In the Cladoniaceae, over 70 different
secondary metabolite Secondary metabolites, also called ''specialised metabolites'', ''secondary products'', or ''natural products'', are organic compounds produced by any lifeform, e.g. bacteria, archaea, fungi, animals, or plants, which are not directly involved ...
s (
lichen product Lichen products, also known as lichen substances, are organic compounds produced by a lichen. Specifically, they are secondary metabolites. Lichen products are represented in several different chemical classes, including terpenoids, orcinol deri ...
s), primarily
polyphenol Polyphenols () are a large family of naturally occurring phenols. They are abundant in plants and structurally diverse. Polyphenols include phenolic acids, flavonoids, tannic acid, and ellagitannin, some of which have been used historically as ...
s, have been identified. These substances crucial roles in species identification and have ecological functions such as protection against UV radiation and deterrence of
herbivore A herbivore is an animal anatomically and physiologically evolved to feed on plants, especially upon vascular tissues such as foliage, fruits or seeds, as the main component of its diet. These more broadly also encompass animals that eat ...
s. To observe the
fluorescence Fluorescence is one of two kinds of photoluminescence, the emission of light by a substance that has absorbed light or other electromagnetic radiation. When exposed to ultraviolet radiation, many substances will glow (fluoresce) with colore ...
of certain
depside A depside is a type of polyphenolic compound composed of two or more monocyclic aromatic units linked by an ester group. Depsides are most often found in lichens, but have also been isolated from higher plants, including species of the Ericaceae, ...
s and
depsidone Depsidones (+ " depside" + "one") are chemical compounds that are sometimes found as secondary metabolites in lichens. They are esters that are both depsides and cyclic ethers. An example is norstictic acid Norstictic acid is a depsidone produ ...
s,
ultraviolet Ultraviolet radiation, also known as simply UV, is electromagnetic radiation of wavelengths of 10–400 nanometers, shorter than that of visible light, but longer than X-rays. UV radiation is present in sunlight and constitutes about 10% of ...
light is directly applied to the specimens. Traditional colour spot tests with reagents like KOH can be ineffective at low concentrations. Consequently,
thin-layer chromatography Thin-layer chromatography (TLC) is a chromatography technique that separates components in non-volatile mixtures. It is performed on a TLC plate made up of a non-reactive solid coated with a thin layer of adsorbent material. This is called the sta ...
, a laboratory technique used to separate chemical compounds, is essential for detecting and identifying lichen substances that are present in low concentrations.
Chemotaxonomy Merriam-Webster defines ''chemotaxonomy'' as the method of biological classification based on similarities and dissimilarity in the structure of certain compounds among the organisms being classified. Advocates argue that, as proteins are more c ...
is an important aspect in the identification of Gray's pixie cup (''
Cladonia grayi ''Cladonia grayi'', commonly known as Gray's cup lichen or Gray's pixie cup, is a species of fruticose lichen in the family Cladoniaceae. It is characterised by small, leaf-like forming its and distinctive upright podetia (5–15 mm tal ...
''): when lit by a
UV light Ultraviolet radiation, also known as simply UV, is electromagnetic radiation of wavelengths of 10–400 nanometers, shorter than that of visible light, but longer than X-rays. UV radiation is present in sunlight and constitutes about 10% of t ...
, it produces a light blue
fluorescence Fluorescence is one of two kinds of photoluminescence, the emission of light by a substance that has absorbed light or other electromagnetic radiation. When exposed to ultraviolet radiation, many substances will glow (fluoresce) with colore ...
.


Photobionts

The symbiotic algal partner (
photobiont A lichen ( , ) is a hybrid colony of algae or cyanobacteria living symbiotically among filaments of multiple fungus species, along with yeasts and bacteria embedded in the cortex or "skin", in a mutualistic relationship.
) of most Cladoniaceae taxa are unicellular
green algae The green algae (: green alga) are a group of chlorophyll-containing autotrophic eukaryotes consisting of the phylum Prasinodermophyta and its unnamed sister group that contains the Chlorophyta and Charophyta/ Streptophyta. The land plants ...
, usually in the genus ''
Asterochloris ''Asterochloris'' is a genus of green algae in the family Trebouxiophyceae. It is a common in lichen, occurring in the thalli of more than 20 lichen genera worldwide. ''Asterochloris'' is distinguishable from the morphologically similar genus ...
'', but occasionally in the genus ''
Chlorella ''Chlorella'' is a genus of about thirteen species of single- celled or colonial green algae of the division Chlorophyta. The cells are spherical in shape, about 2 to 10 μm in diameter, and are without flagella. Their chloroplasts contain t ...
''; both of these genera are in the class
Trebouxiophyceae The Trebouxiophyceae, also known as trebouxiophytes, are a class of green algae, in the division Chlorophyta. Members of this class are single-celled, colonial, or multicellular and are found in freshwater, terrestrial or marine habitats worldwid ...
. Eleven species of ''Asterochloris'' have found to be associated with genus ''Cladonia''; the algal genus – one of the most common lichen symbionts – occurs in the thalli of more than 20 lichen genera. The most common photobionts in this genus that associate with ''Cladonia'' are '' A. glomerata'', '' A. italiana'', and '' A. mediterranea'', with some lineages showing dominance in one or several climatic regions. In contrast, '' Myrmecia'' was shown to be the main photobiont for the Mediterranean species '' Cladonia subturgida''. The algal genus ''
Trebouxia ''Trebouxia'' is a unicellular green alga. It is a photosynthetic organism that can exist in almost all habitats found in polar, tropical, and temperate regions.Erokhina, L. G., Shatilovich, A. V., Kaminskaya, O. P., & Gilichinskii, D. A. (2004 ...
'', a common lichen photobiont, has not been recorded associating with the Cladoniaceae. Some '' Pilophorus'' species form tripartite associations, involving the fungus, green algae, and
cyanobacteria Cyanobacteria ( ) are a group of autotrophic gram-negative bacteria that can obtain biological energy via oxygenic photosynthesis. The name "cyanobacteria" () refers to their bluish green (cyan) color, which forms the basis of cyanobacteri ...
within
gall Galls (from the Latin , 'oak-apple') or ''cecidia'' (from the Greek , anything gushing out) are a kind of swelling growth on the external tissues of plants. Plant galls are abnormal outgrowths of plant tissues, similar to benign tumors or war ...
-like structures called cephalodia. The cyanobacterial genera ''
Nostoc ''Nostoc'', also known as star jelly, troll's butter, spit of moon, fallen star, witch's butter (not to be confused with the fungi commonly known as witches' butter), and witch's jelly, is the most common genus of cyanobacteria found in a variety ...
'' and '' Stigonema'' are involved in these tripartite associations. In a study of several ''Cladonia'' lichens collected from Southern Finland, the associated microbial community, which was found to be consistent amongst the different species, consisted largely of
Alphaproteobacteria ''Alphaproteobacteria'' or ''α-proteobacteria'', also called ''α-Purple bacteria'' in earlier literature, is a class of bacteria in the phylum '' Pseudomonadota'' (formerly "Proteobacteria"). The '' Magnetococcales'' and '' Mariprofundales'' ar ...
and
Acidobacteriota Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture. Description Members of this phylum are physiologically diverse, and can be ...
.


Development

The
development Development or developing may refer to: Arts *Development (music), the process by which thematic material is reshaped * Photographic development *Filmmaking, development phase, including finance and budgeting * Development hell, when a proje ...
of several Cladoniaceae genera have been studied in detail, although the interpretation of results has sometimes been controversial. For example, two 1970 studies by Hans Jahns explored the development of fruiting bodies in ''Cladonia'', significant for understanding the taxonomy and phylogeny within the Cladoniaceae. This work revealed two distinct ontogenetic types based on the formation of generative tissue and its role in developing the characteristic podetium of ''Cladonia'' species. This generative tissue, originating in the thallus horizontalis and growing vertically, is crucial for forming the podetium. The study identified variability within species, showing that different species can have more than one ontogenetic type, challenging previous assumptions about the uniformity of development patterns within the genus. This demonstrated variability had implications for the taxonomy and phylogenetic relationships within Cladoniaceae, suggesting a complex evolution of reproductive structures that did not strictly align with previously conceived taxonomic groupings. Cladoniaceae species begin development with the formation of a
prothallus A prothallus, or prothallium, (from Latin ''pro'' = forwards and Greek ''θαλλος'' (''thallos'') = twig) is usually the gametophyte stage in the life of a fern or other pteridophyte. Occasionally the term is also used to describe the young ...
– a fungal layer upon which an
alga Algae ( , ; : alga ) is an informal term for any organisms of a large and diverse group of photosynthetic organisms that are not plants, and includes species from multiple distinct clades. Such organisms range from unicellular microalgae, suc ...
-containing
thallus Thallus (: thalli), from Latinized Greek (), meaning "a green shoot" or "twig", is the vegetative tissue of some organisms in diverse groups such as algae, fungi, some liverworts, lichens, and the Myxogastria. A thallus usually names the entir ...
will develop. It comprises the
hypha A hypha (; ) is a long, branching, filamentous structure of a fungus, oomycete, or actinobacterium. In most fungi, hyphae are the main mode of vegetative growth, and are collectively called a mycelium. Structure A hypha consists of one o ...
e from the
germination Germination is the process by which an organism grows from a seed or spore. The term is applied to the sprouting of a seedling from a seed of an angiosperm or gymnosperm, the growth of a sporeling from a spore, such as the spores of fungi, ...
of an
ascospore In fungi, an ascospore is the sexual spore formed inside an ascus—the sac-like cell that defines the division Ascomycota, the largest and most diverse Division (botany), division of fungi. After two parental cell nucleus, nuclei fuse, the ascu ...
. After the protothallus contacts the alga, lichenisation begins with the development of small squamules (scale-like thallus segments) that make up the primary thallus, which is squamulose (scaly) or crustose (crustose-like). The secondary thallus consists of vertical structures that are shrubby and hollow, although they can be solid in rare cases. If these structures are made of generative tissue, they are called '' podetia''; when they are made of vegetative tissue, they are called ''pseudopodetia''. The morphology of these structures determines to a large part the taxonomy of the Cladoniaceae, which can range from simple to complex branching patterns. '' Cladonia minisaxicola'', found in the mountains of
Bahia Bahia () is one of the 26 Federative units of Brazil, states of Brazil, located in the Northeast Region, Brazil, Northeast Region of the country. It is the fourth-largest Brazilian state by population (after São Paulo (state), São Paulo, Mina ...
(Brazil) is the only species in that large genus that is completely crustose and does not develop podetia. The tips of the podetia have a wide range of morphology in the Cladoniaceae. They can be straight, tapering from a wide base to a point (called ), or flaring on cup-shaped . The scyphi are sometimes closed, or have a central perforation, forming structures called funnels. The podetia are slow-growing, with an annual growth rate generally ranging from 1 to 15 mm. Branching in the Cladoniaceae occurs on the podetium, driven by the growth patterns of fungal
meristem In cell biology, the meristem is a structure composed of specialized tissue found in plants, consisting of stem cells, known as meristematic cells, which are undifferentiated cells capable of continuous cellular division. These meristematic c ...
tissue at its tip. There are two main branching patterns: in one, branches emerge later from a large meristem that changes shape, while in the other, smaller meristems split early but keep their shape. These growth patterns help scientists understand the evolutionary relationships within Cladoniaceae. A shift from isotropous growth (uniform in all directions) to anisotropous growth (different in various directions) allows for more flexibility in development. This transition, from symmetrical to more irregular growth, may signal evolutionary adaptations. Despite these changes, the branching processes remain highly consistent even among species in the family that are not closely related.


Genera

After more than a century of discovery and research, including recent advances in understanding revealed by
molecular phylogenetics Molecular phylogenetics () is the branch of phylogeny that analyzes genetic, hereditary molecular differences, predominantly in DNA sequences, to gain information on an organism's evolutionary relationships. From these analyses, it is possible to ...
studies, the Cladoniaceae encompass 18 genera and more than 500 species. In terms of
species diversity Species diversity is the number of different species that are represented in a given community (a dataset). The effective number of species refers to the number of equally abundant species needed to obtain the same mean proportional species abundan ...
, the Cladoniaceae stood as the tenth-largest lichen-forming fungal family by 2017. This is a list of the genera contained within the Cladoniaceae, based on the
Catalogue of Life The Catalogue of Life (CoL) is an online database that provides an index of known species of animals, plants, fungi, and microorganisms. It was created in 2001 as a partnership between the global Species 2000 and the American Integrated Taxono ...
; this includes taxa formerly classified in the Squamarinaceae, but does not include the
Stereocaulaceae The Stereocaulaceae are a family of lichen-forming fungi in the order Lecanorales. It contains five genera. Species of this family are widely distributed in temperate boreal and austral regions. Genera *'' Hertelidea'' – 6 spp. *''Lepraria ...
. Following the genus name is the
taxonomic authority In biology, taxonomy () is the scientific study of naming, defining ( circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxa (singular: taxon), and these groups are given ...
, year of publication, and the number of species: *'' Calathaspis'' – 1 sp. *'' Carassea'' – 1 sp. *'' Cetradonia'' – 1 sp. *'' Cladia'' – ca. 27 spp. *'' Cladonia'' ca. 500 spp. *'' Gymnoderma'' – 3 spp. *'' Heteromyces'' – 1 sp. *'' Metus'' – 3 spp. *'' Muhria'' – 1 sp. *'' Notocladonia'' – 2 spp. *'' Paralecia'' – 1 sp. *'' Pilophorus'' – 17 spp. *''
Pulchrocladia ''Pulchrocladia'' is a genus of fruticose lichens in the family Cladoniaceae. It has three species. The genus was circumscribed in 2018 by lichenologists Soili Stenroos, Raquel Pino-Bodas, Helge Thorsten Lumbsch, and Teuvo Ahti. The genus name ...
'' – 3 spp. *'' Pycnothelia'' – 2 spp. *''
Rexiella ''Rexiella'' is a lichen genus in the family Cladoniaceae. The genus, originally circumscribed with the name ''Rexia'' by authors Soili Stenroos, Raquel Pino-Bodas, and Teuvo Ahti in 2018, was created to contain the species ''Cladonia sullivani ...
'' – 1 sp. *'' Sphaerophoropsis'' – 2 spp. *'' Squamella'' – 1 sp. *'' Thysanothecium'' – 3 spp. '' Myelorrhiza'' was transferred from the Cladoniaceae to the
Ramalinaceae The Ramalinaceae are a family of lichen-forming fungi in the order Lecanorales. First proposed by Carl Adolph Agardh in 1821, the family now comprises 63 genera and about 750 species. Ramalinaceae lichens exhibit diverse growth forms, includin ...
by Sonja Kistenich and colleagues in 2018. '' Neophyllis'', originally classified in the Cladoniaceae, was transferred to Sphaerophoraceae in 1999.


Habitat and distribution

Cladoniaceae species have been recorded growing in many habitats and on a diversity of substrates, including soil, tree trunks, and rotten wood. In a few cases, Cladoniaceae can grow on rocks, such as '' Cladonia salmonea'' which grows on the rock faces of vertical cliffs, or '' Cladonia pyxidata'', which can grow on thin soil on rocks. Cladoniaceae species are generally absent from
arid Aridity is the condition of geographical regions which make up approximately 43% of total global available land area, characterized by low annual precipitation, increased temperatures, and limited water availability.Perez-Aguilar, L. Y., Plata ...
environments due to their preference for humid conditions. The range of their habitats includes
boreal forest Taiga or tayga ( ; , ), also known as boreal forest or snow forest, is a biome characterized by pinophyta, coniferous forests consisting mostly of pines, spruces, and larches. The taiga, or boreal forest, is the world's largest land biome. I ...
s,
bog A bog or bogland is a wetland that accumulates peat as a deposit of dead plant materials often mosses, typically sphagnum moss. It is one of the four main types of wetlands. Other names for bogs include mire, mosses, quagmire, and musk ...
s,
temperate In geography, the temperate climates of Earth occur in the middle latitudes (approximately 23.5° to 66.5° N/S of the Equator), which span between the tropics and the polar regions of Earth. These zones generally have wider temperature ran ...
forests, the
tundra In physical geography, a tundra () is a type of biome where tree growth is hindered by frigid temperatures and short growing seasons. There are three regions and associated types of tundra: #Arctic, Arctic, Alpine tundra, Alpine, and #Antarctic ...
of the Arctic and Antarctic, man-made habitats (e.g. roadsides), tropical highlands, and the sandy tropical lowlands of the
Amazon rainforest The Amazon rainforest, also called the Amazon jungle or Amazonia, is a Tropical and subtropical moist broadleaf forests, moist broadleaf tropical rainforest in the Amazon biome that covers most of the Amazon basin of South America. This basin ...
. In his 2000 monograph on the Cladoniaceae of the
Neotropical realm The Neotropical realm is one of the eight biogeographic realms constituting Earth's land surface. Physically, it includes the tropics, tropical Ecoregion#Terrestrial, terrestrial ecoregions of the Americas and the entire South American temperat ...
, Ahti included 184 species in 4 genera, and showed that South America is a hotspot of biodiversity for genus ''Clanodia''. Bioclimatic variables significantly influence the distribution of Cladoniaceae species richness in the Neotropics, particularly under conditions of low precipitation and temperature, and high climatic variability. Areas with stable climates and higher temperatures and precipitation tend to support greater species richness. Twenty-six Cladoniaceae species (25 ''Cladonia'' and 1 ''Cladia'') are known to occur in the
Galápagos Islands The Galápagos Islands () are an archipelago of volcanic islands in the Eastern Pacific, located around the equator, west of the mainland of South America. They form the Galápagos Province of the Republic of Ecuador, with a population of sli ...
. There, some species form mats on lava flows that have developed little soil. A 2013 monograph of Northern European Cladoniaceae treated 100 species (95 ''Cladonia'', 4 ''Pilophorus'', and the monotypic genus ''Pycnothelia''). In the 2021 key to lichen species in Italy, 86 Cladoniaceae are included. In Bulgaria, 55 species in two genera were reported in 2022. In a study of the lichen
biodiversity Biodiversity is the variability of life, life on Earth. It can be measured on various levels. There is for example genetic variability, species diversity, ecosystem diversity and Phylogenetics, phylogenetic diversity. Diversity is not distribut ...
in Kazakhstan's Burabay National Park, the Cladoniaceae made up about 30 percent of the species diversity. In western North America, the
Coast Mountains The Coast Mountains () are a major mountain range in the Pacific Coast Ranges of western North America, extending from southwestern Yukon through the Alaska Panhandle and virtually all of the British Columbia Coast, Coast of British Columbia sout ...
of
British Columbia British Columbia is the westernmost Provinces and territories of Canada, province of Canada. Situated in the Pacific Northwest between the Pacific Ocean and the Rocky Mountains, the province has a diverse geography, with rugged landscapes that ...
act as a key phytogeographic barrier. This results in distinct oceanic and continental taxa groupings on either side. The research also suggests that the southern boundaries of certain species may be determined more by historical rather than purely ecological factors, indicating possible range expansions. The highest diversity of ''Cladonia'' species is found in British Columbia between 52°N and 56°N, an area that was covered by glaciers until about 10,000 to 13,000 years ago. The Cladoniaceae biodiversity in this region represents the richest assemblage of the family in western North America. Species diversity declines sharply south of 52°N, with a loss of three to five taxa for each degree of latitude. The
glacial A glacier (; or ) is a persistent body of dense ice, a form of rock, that is constantly moving downhill under its own weight. A glacier forms where the accumulation of snow exceeds its ablation over many years, often centuries. It acquires ...
history of the region has played a crucial role in shaping the current distribution of Cladoniaceae. During the
Pleistocene The Pleistocene ( ; referred to colloquially as the ''ice age, Ice Age'') is the geological epoch (geology), epoch that lasted from to 11,700 years ago, spanning the Earth's most recent period of repeated glaciations. Before a change was fin ...
, most species likely survived in areas south of the Cordilleran ice sheet, with some persisting in
nunatak A nunatak (from Inuit language, Inuit ) is the summit or ridge of a mountain that protrudes from an ice field or glacier that otherwise covers most of the mountain or ridge. They often form natural pyramidal peaks. Isolated nunataks are also cal ...
s, arctic regions, or small coastal refugia. This glacial legacy is still evident in the family's current distribution patterns. Cladoniaceae show a preference for specific habitats, with greater floristic and chemical diversity observed in humid areas and lower forested elevations compared to arid regions and alpine zones. This suggests that many species in the family are adapted to environments with relatively short periods of desiccation. The post-glacial period has seen significant changes in the distribution of Cladoniaceae. Many species that likely existed in
Washington Washington most commonly refers to: * George Washington (1732–1799), the first president of the United States * Washington (state), a state in the Pacific Northwest of the United States * Washington, D.C., the capital of the United States ** A ...
,
Oregon Oregon ( , ) is a U.S. state, state in the Pacific Northwest region of the United States. It is a part of the Western U.S., with the Columbia River delineating much of Oregon's northern boundary with Washington (state), Washington, while t ...
, and
California California () is a U.S. state, state in the Western United States that lies on the West Coast of the United States, Pacific Coast. It borders Oregon to the north, Nevada and Arizona to the east, and shares Mexico–United States border, an ...
during the Pleistocene are now absent from these areas. This change is thought to be a result of climate shifts since deglaciation, particularly an increase in summer moisture deficits. While most Cladoniaceae species have reached a stable distribution, some are still in flux. Species like ''Cladina stellaris'' and '' C. trassii'' appear to be continuing their southward expansion from northern glacial refugia.


Conservation

Each of the six Cladoniaceae species that have been assessed by the
International Union for Conservation of Nature The International Union for Conservation of Nature (IUCN) is an international organization working in the field of nature conservation and sustainable use of natural resources. Founded in 1948, IUCN has become the global authority on the stat ...
for the global
IUCN Red List The International Union for Conservation of Nature (IUCN) Red List of Threatened Species, also known as the IUCN Red List or Red Data Book, founded in 1964, is an inventory of the global conservation status and extinction risk of biological ...
face a variety of threats impacting their survival. '' Cetradonia linearis'' ( vulnerable, 2015) is endangered by ecosystem changes in spruce–fir forests, specifically the
balsam woolly adelgid The balsam woolly adelgid (''Adelges piceae'') is small wingless insect that infests and kills firs. In their native Europe they are a minor parasite on silver fir and Sicilian fir, but they have become a threat especially to balsam fir and ...
's impact on
Fraser fir The Fraser fir (''Abies fraseri''), sometimes spelled Frasier fir, is an endangered species of fir native to the Appalachian Mountains of the southeastern United States. They are endemic to only seven montane regions in the Appalachian Mountains ...
, and changes in humidity regimes and cloud immersion. The species is also vulnerable to threats from logging, mining, and road building if its legal protection status is removed. '' Cladonia appalachiensis'' (
endangered An endangered species is a species that is very likely to become extinct in the near future, either worldwide or in a particular political jurisdiction. Endangered species may be at risk due to factors such as habitat loss, poaching, inv ...
, 2020) growing on high-elevation Anakeesta Knob rock, faces threats from visitor disruption and changes in
cloud cover Cloud cover (also known as cloudiness, cloudage, or cloud amount) refers to the fraction of the sky obscured by clouds on average when observed from a particular location. Okta is the usual unit for measurement of the cloud cover. The cloud c ...
and humidity. The species is particularly vulnerable due to its restricted range and specific habitat requirements. The main threats to ''
Cladonia perforata ''Cladonia perforata'' is a rare species of lichen known as Florida perforate cladonia and Florida perforate reindeer lichen. It is Endemism, endemic to the state of Florida in the United States, where it is known from 16 populations in four wide ...
'' (endangered, 2003) include
habitat loss Habitat destruction (also termed habitat loss or habitat reduction) occurs when a natural habitat is no longer able to support its native species. The organisms once living there have either moved elsewhere, or are dead, leading to a decrease ...
,
hurricane A tropical cyclone is a rapidly rotating storm system with a low-pressure area, a closed low-level atmospheric circulation, strong winds, and a spiral arrangement of thunderstorms that produce heavy rain and squalls. Depending on its ...
s, and improper fire management, with a single natural event potentially causing substantial subpopulation reduction. '' Cladonia submitis'' (endangered, 2020) is primarily threatened by habitat loss and degradation due to
land development Land development is the alteration of landscape in any number of ways, such as: * Changing landforms from a natural or semi-natural state for a purpose such as agriculture or House, housing * subdivision (land), Subdividing real estate into Lot ( ...
, particularly around metropolitan areas.
Climate change Present-day climate change includes both global warming—the ongoing increase in Global surface temperature, global average temperature—and its wider effects on Earth's climate system. Climate variability and change, Climate change in ...
also poses significant risks through altered fire regimes and
sea level rise The sea level has been rising from the end of the last ice age, which was around 20,000 years ago. Between 1901 and 2018, the average sea level rose by , with an increase of per year since the 1970s. This was faster than the sea level had e ...
, affecting its pine barren and sand
dune A dune is a landform composed of wind- or water-driven sand. It typically takes the form of a mound, ridge, or hill. An area with dunes is called a dune system or a dune complex. A large dune complex is called a dune field, while broad, flat ...
habitats. The species' limited distribution and specific habitat requirements make it particularly susceptible to these threats. '' Pilophorus fibula'' (endangered, 2020) is threatened by habitat loss, alteration of hydrological regimes, recreational damage, and declining
water quality Water quality refers to the chemical, physical, and biological characteristics of water based on the standards of its usage. It is most frequently used by reference to a set of standards against which compliance, generally achieved through tr ...
. The species is found in a limited number of locations, making it vulnerable to local extinctions. '' Gymnoderma insulare'' (endangered, 2014), primarily found in
old-growth forest An old-growth forest or primary forest is a forest that has developed over a long period of time without disturbance. Due to this, old-growth forests exhibit unique ecological features. The Food and Agriculture Organization of the United Natio ...
s in Japan and Taiwan, faces threats from natural hazards like
typhoon A typhoon is a tropical cyclone that develops between 180° and 100°E in the Northern Hemisphere and which produces sustained hurricane-force winds of at least . This region is referred to as the Northwestern Pacific Basin, accounting for a ...
s and is affected by the decline of its tree hosts, ''
Cryptomeria japonica ''Cryptomeria'' (literally "hidden parts") is a monotypic genus of conifer in the cypress family Cupressaceae. It includes only one species, ''Cryptomeria japonica'' ( syn. ''Cupressus japonica'' L.f.). It is considered to be endemic to Japa ...
'' and ''
Chamaecyparis obtusa ''Chamaecyparis obtusa'' (Japanese cypress, hinoki cypress or hinoki; or , ) is a species of cypress native to central Japan in East Asia, and widely cultivated in the temperate climate, temperate northern hemisphere for its high-quality timber ...
''. The species' dependence on specific host trees and old-growth forest conditions makes it particularly vulnerable to forest degradation and climate change impacts. On the
red list The International Union for Conservation of Nature (IUCN) Red List of Threatened Species, also known as the IUCN Red List or Red Data Book, founded in 1964, is an inventory of the global conservation status and extinction risk of biological sp ...
of China's macrofungi, '' Cladonia delavayi'' (vulnerable), '' Cladonia pseudoevansii'' (
critically endangered An IUCN Red List critically endangered (CR or sometimes CE) species is one that has been categorized by the International Union for Conservation of Nature as facing an extremely high risk of extinction in the wild. As of December 2023, of t ...
), '' Gymnoderma coccocarpum'' (endangered), and '' Gymnoderma insulare'' (endangered) are the representatives of the Cladoniaceae.


Human interactions and uses

''Cladonia'' lichens, particularly the "reindeer lichens" such as ''C. stellaris'', ''C. rangiferina'', and ''C. arbuscula'', are a critical winter food source for
reindeer The reindeer or caribou (''Rangifer tarandus'') is a species of deer with circumpolar distribution, native to Arctic, subarctic, tundra, taiga, boreal, and mountainous regions of Northern Europe, Siberia, and North America. It is the only re ...
(caribou) in northern boreal and arctic regions. In some areas, these lichens can constitute up to 80% of reindeer winter diet. The average annual linear growth rate of these reindeer lichens is about 5 mm per year, accounting for their slow recovery rate after
grazing In agriculture, grazing is a method of animal husbandry whereby domestic livestock are allowed outdoors to free range (roam around) and consume wild vegetations in order to feed conversion ratio, convert the otherwise indigestible (by human diges ...
or disturbance. Satellite-based studies have shown a significant decline in caribou lichen cover across large areas of Eastern Canada over the past three decades, likely due to factors such as climate change-induced shrub encroachment, increased
wildfire A wildfire, forest fire, or a bushfire is an unplanned and uncontrolled fire in an area of Combustibility and flammability, combustible vegetation. Depending on the type of vegetation present, a wildfire may be more specifically identified as a ...
frequency, and grazing pressure, which could have serious implications for caribou populations and ecosystem dynamics. The abundance of lichen-rich forests has significant economic implications for reindeer
husbandry Animal husbandry is the branch of agriculture concerned with animals that are raised for meat, fibre, milk, or other products. It includes day-to-day care, management, production, nutrition, selective breeding, and the raising of livestock. ...
, particularly for indigenous
Sámi people The Sámi ( ; also spelled Sami or Saami) are the traditionally Sámi languages, Sámi-speaking indigenous people inhabiting the region of Sápmi, which today encompasses large northern parts of Norway, Sweden, Finland, and of the Kola Peninsula ...
in
Fennoscandia __NOTOC__ Fennoscandia (Finnish language, Finnish, Swedish language, Swedish and ; ), or the Fennoscandian Peninsula, is a peninsula in Europe which includes the Scandinavian Peninsula, Scandinavian and Kola Peninsula, Kola peninsulas, mainland ...
. However, lichen-dominated forests have declined significantly in recent decades due to factors such as intensive forestry practices, overgrazing, and fire suppression. This decline has prompted efforts to restore lichen habitats, including experimental transplantation of lichen fragments to accelerate recovery after disturbances like forest fires. Some Cladoniaceae species are exploited in a profitable export business for decorative uses, with demand reaching thousands of kilograms. In Europe, ''
Cladonia stellaris ''Cladonia stellaris'' (star-tipped cup lichen or star reindeer lichen) is an ecologically important species of cup lichen that forms continuous mats over large areas of the ground in boreal and arctic regions around the circumpolar north. The ...
'' is used ornamentally in
wreath A wreath () is an assortment of flowers, leaves, fruits, twigs, or various materials that is constructed to form a ring shape. In English-speaking countries, wreaths are used typically as household ornaments, most commonly as an Advent and C ...
s, floral decorations and architectural models. From 1970–1975, an average of nearly 3000 metric tonnes were exported each year from Finland, Norway and Sweden; most of these exports (about 80%) went to
West Germany West Germany was the common English name for the Federal Republic of Germany (FRG) from its formation on 23 May 1949 until German reunification, its reunification with East Germany on 3 October 1990. It is sometimes known as the Bonn Republi ...
. Fruticose ''Cladonia'' species, often dyed green and
glycerol Glycerol () is a simple triol compound. It is a colorless, odorless, sweet-tasting, viscous liquid. The glycerol backbone is found in lipids known as glycerides. It is also widely used as a sweetener in the food industry and as a humectant in pha ...
-treated for flexibility, are common in
model train Railway modelling (UK, Australia, New Zealand, and Ireland) or model railroading (US and Canada) is a hobby in which rail transport systems are modelled at a reduced scale. The scale models include locomotives, rolling stock, streetcars, ...
displays as miniature trees and shrubs. The product commercially sold as "ball moss" or "Icelandic moss" in hobby and craft stores is often ''Cladonia stellaris'' and other similar species, often dyed in various colours. In Sweden, ''Cladonia'' lichens were used historically as a partial insulation for storm windows. The complex net-like structures of the Australasian lichen ''
Pulchrocladia retipora ''Pulchrocladia retipora'', commonly known as the coral lichen, is a species of fruticose lichen in the family Cladoniaceae. Found predominantly in Australasia, its habitats range from the Australian Capital Territory to New Zealand's North a ...
'' have been described as "of considerable beauty resembling lace or coral", and have been utilised in floral and architectural design. This species' branches, characterised by its numerous small holes, exemplify nature's efficient use of
latticework __NOTOC__ Latticework is an openwork framework consisting of a criss-crossed pattern of strips of building material, typically wood or metal. The design is created by crossing the strips to form a grid or weave. Latticework may be functional &nd ...
structures. This design, widely used in construction for structures such as
transmission tower A transmission tower (also electricity pylon, hydro tower, or pylon) is a tall structure, usually a lattice tower made of steel that is used to support an overhead power line. In electrical grids, transmission towers carry high-voltage transmis ...
s or bridges, allows the organism to maintain structural integrity while minimising the amount of biological material used in its construction. The unique lichen architectures of five Cladoniaceae species are depicted in
Ernst Haeckel Ernst Heinrich Philipp August Haeckel (; ; 16 February 1834 – 9 August 1919) was a German zoologist, natural history, naturalist, eugenics, eugenicist, Philosophy, philosopher, physician, professor, marine biology, marine biologist and artist ...
's well-known and widely reproduced lichen-themed
lithograph Lithography () is a planographic method of printing originally based on the miscibility, immiscibility of oil and water. The printing is from a stone (lithographic limestone) or a metal plate with a smooth surface. It was invented in 1796 by ...
in his 1904 work ''Kunstformen der Nature'' (''The art forms of nature''). According to the lichenologists
Robert Lücking Robert Lücking (born 1964) is a German lichenologist, known for his extensive research on foliicolous lichens (lichens that live on leaves) and his significant contributions to the taxonomy, ecology, and biodiversity of fungi and lichens. He e ...
and Toby Spribille, "the ''Cladonia'' growth form continues to be one of the most widely recognized lichen architectures, with their basal scales and erect, often trumpet-shaped podetia".


References


Cited literature

* * * {{Taxonbar, from=Q1363839 Lichen families Lecanoromycetes families Taxa described in 1827 Taxa named by Jonathan Carl Zenker