Haplogroup F, also known as F-M89 and previously as Haplogroup FT, is a very common
Y-chromosome haplogroup
In human genetics, a human Y-chromosome DNA haplogroup is a haplogroup defined by specific mutations
In biology, a mutation is an alteration in the nucleic acid sequence of the genome of an organism, virus, or extrachromosomal DNA. Vir ...
. The clade and its
subclade
In genetics, a subclade is a subgroup of a haplogroup.
Naming convention
Although human mitochondrial DNA (mtDNA) and Y chromosome DNA (Y-DNA) haplogroups and subclades are named in a similar manner, their names belong to completely separate syst ...
s constitute over 95% of paternal lineages outside of Africa.
The vast majority of individual males with F-M89 fall into its direct descendant
Haplogroup GHIJK
Haplogroup GHIJK, defined by the SNPs M3658, F1329, PF2622, and YSC0001299,ISOGG, 2015, ''Y-DNA Haplogroup F and its Subclades - 2015'' (8 September 2015). In addition to GHIJK, haplogroup F has three other immediate descendant subclades: F1 (P91/P104), F2 (M427/M428), and F3 (M481). These three, with F* (M89*), constitute the
paragroup
Paragroup is a term used in population genetics to describe lineages within a haplogroup that are not defined by any additional unique markers.
In human Y-chromosome DNA haplogroups, paragroups are typically represented by an asterisk (*) pl ...
F(xGHIJK). They are primarily found throughout South Asia, Southeast Asia and parts of East Asia.
Haplogroup GHIJK branches subsequently split into two direct descendants: G (M201/PF2957) and HIJK (F929/M578/PF3494/S6397). HIJK in turn splits into H (L901/M2939) and IJK (F-L15). The descendants of the haplogroup IJK include the clades I, J, K, and, ultimately, several major haplogroups descended from Haplogroup K, namely: haplogroups M, N, O, P, Q, R, S, L, and T.
Origins
It is estimated that the SNP M89 appeared 38,700–55,700 years ago, and most likely originated in
West Asia
West Asia (also called Western Asia or Southwest Asia) is the westernmost region of Asia. As defined by most academics, UN bodies and other institutions, the subregion consists of Anatolia, the Arabian Peninsula, Iran, Mesopotamia, the Armenian ...
or
Southeast Asia
Southeast Asia is the geographical United Nations geoscheme for Asia#South-eastern Asia, southeastern region of Asia, consisting of the regions that are situated south of China, east of the Indian subcontinent, and northwest of the Mainland Au ...
It has also been suggested by previous research that F-M89 most likely first appeared in the
Arabian Peninsula
The Arabian Peninsula (, , or , , ) or Arabia, is a peninsula in West Asia, situated north-east of Africa on the Arabian plate. At , comparable in size to India, the Arabian Peninsula is the largest peninsula in the world.
Geographically, the ...
,
Levant
The Levant ( ) is the subregion that borders the Eastern Mediterranean, Eastern Mediterranean sea to the west, and forms the core of West Asia and the political term, Middle East, ''Middle East''. In its narrowest sense, which is in use toda ...
or
North Africa
North Africa (sometimes Northern Africa) is a region encompassing the northern portion of the African continent. There is no singularly accepted scope for the region. However, it is sometimes defined as stretching from the Atlantic shores of t ...
, about 43,800–56,800 years ago. It has also been speculated that the possible location of this lineage's first expansion and rise to prevalence appears to have been in the
Indian Subcontinent
The Indian subcontinent is a physiographic region of Asia below the Himalayas which projects into the Indian Ocean between the Bay of Bengal to the east and the Arabian Sea to the west. It is now divided between Bangladesh, India, and Pakista ...
, or somewhere close to it, and most of the descendant subclades and haplogroups appear to have radiated outward from The
Persian Gulf
The Persian Gulf, sometimes called the Arabian Gulf, is a Mediterranean seas, mediterranean sea in West Asia. The body of water is an extension of the Arabian Sea and the larger Indian Ocean located between Iran and the Arabian Peninsula.Un ...
and/or neighbouring parts of the
Middle East
The Middle East (term originally coined in English language) is a geopolitical region encompassing the Arabian Peninsula, the Levant, Turkey, Egypt, Iran, and Iraq.
The term came into widespread usage by the United Kingdom and western Eur ...
and
Southeast Asia
Southeast Asia is the geographical United Nations geoscheme for Asia#South-eastern Asia, southeastern region of Asia, consisting of the regions that are situated south of China, east of the Indian subcontinent, and northwest of the Mainland Au ...
.
Some lineages derived from Haplogroup F-M89 appear to have back-migrated into Africa from
West Asia
West Asia (also called Western Asia or Southwest Asia) is the westernmost region of Asia. As defined by most academics, UN bodies and other institutions, the subregion consists of Anatolia, the Arabian Peninsula, Iran, Mesopotamia, the Armenian ...
, during prehistory. For example, subclades of F-M89 were discovered in ancient DNA samples from Sudan, which were associated with both Meroitic and Post-Meroiti burials.
Distribution
The vast majority of living individuals carrying F-M89 belong to subclades of GHIJK. By comparison, cases of the paragroup F(xG,H,I,J,K) – that is, either basal F* (M89) or the primary subclades F1 (P91; P104), F2 (M427; M428) and F3 (M481) – are relatively rare worldwide.
F(xG,H,I,J,K)
A lack of precise, high resolution testing in the past makes it difficult to discuss F*, F1, F2* and F3* separately.
ISOGG
The International Society of Genetic Genealogy (ISOGG) is an independent non-commercial nonprofit organization of genetic genealogists run by volunteers. It was founded by a group of surname DNA project administrators in 2005 to promote DNA tes ...
states that F(xG,H,I,J,K) has not been well studied, occurs "infrequently" in modern populations and peaks in
South Asia
South Asia is the southern Subregion#Asia, subregion of Asia that is defined in both geographical and Ethnicity, ethnic-Culture, cultural terms. South Asia, with a population of 2.04 billion, contains a quarter (25%) of the world's populatio ...
, especially
Sri Lanka
Sri Lanka, officially the Democratic Socialist Republic of Sri Lanka, also known historically as Ceylon, is an island country in South Asia. It lies in the Indian Ocean, southwest of the Bay of Bengal, separated from the Indian subcontinent, ...
. It also appears to have long been present in
South East Asia
Southeast Asia is the geographical United Nations geoscheme for Asia#South-eastern Asia, southeastern region of Asia, consisting of the regions that are situated south of China, east of the Indian subcontinent, and northwest of the Mainland Au ...
. However, the possibility of misidentification is considered to be relatively high and some cases may in fact belong to misidentified subclades of Haplogroup GHIJK. This was, for instance, the case with the subclade Haplogroup H2 (P96), which was originally named "F3", i.e. – a name that has since been reassigned to F-M481.
F(xF1,F2,F3) has been reported among 10% of males in Sri Lanka, 5.2% of males across India (including up to 10% of males in South India), 5% in Pakistan, as well as lower levels among the
Tamang people
The Tamang people (; Devanagari: तामाङ; ''tāmāṅ'') are an ethnic group living in Nepal, Northeast India and southern Bhutan. In Nepal, they are concentrated in the central hilly and Himalayan regions and constituted over 1.6 mill ...
(Nepal), and in
Iran
Iran, officially the Islamic Republic of Iran (IRI) and also known as Persia, is a country in West Asia. It borders Iraq to the west, Turkey, Azerbaijan, and Armenia to the northwest, the Caspian Sea to the north, Turkmenistan to the nort ...
.
Men originating in
Indonesia
Indonesia, officially the Republic of Indonesia, is a country in Southeast Asia and Oceania, between the Indian Ocean, Indian and Pacific Ocean, Pacific oceans. Comprising over List of islands of Indonesia, 17,000 islands, including Sumatra, ...
have also been reported to carry F(xG,H,I,J,K) – especially F-M89* – at relatively significant levels. It has been reported at rates of 4-5% in
Sulawesi
Sulawesi ( ), also known as Celebes ( ), is an island in Indonesia. One of the four Greater Sunda Islands, and the List of islands by area, world's 11th-largest island, it is situated east of Borneo, west of the Maluku Islands, and south of Min ...
and
Lembata
Lembata is an island in the Lesser Sunda Islands, also known as Lomblen or Kawela; it is the largest island of the Solor Archipelago, in the Lesser Sunda Islands, Indonesia. It forms a separate regency of the province of Nusa Tenggara Timur. Th ...
. One study, which did not comprehensively screen for other subclades of F-M89 (including some subclades of GHIJK), found that Indonesian men with the SNP P14/PF2704 (which is equivalent to M89), comprise 1.8% of men in
West Timor
West Timor () is an area covering the western part of the island of Timor, except for the district of Oecussi-Ambeno (an East Timorese exclave). Administratively, West Timor is part of East Nusa Tenggara Province, Indonesia. The capital as well ...
, 1.5% of
Flores
Flores is one of the Lesser Sunda Islands, a group of islands in the eastern half of Indonesia. Administratively, it forms the largest island in the East Nusa Tenggara Province. The area is 14,250 km2. Including Komodo and Rinca islands ...
5.4% of
Lembata
Lembata is an island in the Lesser Sunda Islands, also known as Lomblen or Kawela; it is the largest island of the Solor Archipelago, in the Lesser Sunda Islands, Indonesia. It forms a separate regency of the province of Nusa Tenggara Timur. Th ...
2.3% of
Sulawesi
Sulawesi ( ), also known as Celebes ( ), is an island in Indonesia. One of the four Greater Sunda Islands, and the List of islands by area, world's 11th-largest island, it is situated east of Borneo, west of the Maluku Islands, and south of Min ...
and 0.2% in
Sumatra
Sumatra () is one of the Sunda Islands of western Indonesia. It is the largest island that is fully within Indonesian territory, as well as the list of islands by area, sixth-largest island in the world at 482,286.55 km2 (182,812 mi. ...
. F1 (P91), F2 (M427) and F3 (M481; previously F5) are all highly rare and virtually exclusive to regions/ethnic minorities in Sri Lanka, India, Nepal,
South China
South China ( zh, s=, p=Huá'nán, j=jyut6 naam4) is a geographical and cultural region that covers the southernmost part of China. Its precise meaning varies with context. A notable feature of South China in comparison to the rest of China is ...
,
Thailand
Thailand, officially the Kingdom of Thailand and historically known as Siam (the official name until 1939), is a country in Southeast Asia on the Mainland Southeast Asia, Indochinese Peninsula. With a population of almost 66 million, it spa ...
,
Burma
Myanmar, officially the Republic of the Union of Myanmar; and also referred to as Burma (the official English name until 1989), is a country in northwest Southeast Asia. It is the largest country by area in Mainland Southeast Asia and ha ...
, and
Vietnam
Vietnam, officially the Socialist Republic of Vietnam (SRV), is a country at the eastern edge of mainland Southeast Asia, with an area of about and a population of over 100 million, making it the world's List of countries and depende ...
.
In
Central Asia
Central Asia is a region of Asia consisting of Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan, and Uzbekistan. The countries as a group are also colloquially referred to as the "-stans" as all have names ending with the Persian language, Pers ...
, examples of F(xG,H,I,J,K) have been reported in individuals from
Turkmenistan
Turkmenistan is a landlocked country in Central Asia bordered by Kazakhstan to the northwest, Uzbekistan to the north, east and northeast, Afghanistan to the southeast, Iran to the south and southwest and the Caspian Sea to the west. Ash ...
and
Uzbekistan
, image_flag = Flag of Uzbekistan.svg
, image_coat = Emblem of Uzbekistan.svg
, symbol_type = Emblem of Uzbekistan, Emblem
, national_anthem = "State Anthem of Uzbekistan, State Anthem of the Republ ...
.
Kutanan ''et al.'' (2020) have found F*-M89 in 50.0% (8/16) of a sample of Red Lahu, 47.1% (8/17) of a sample of Black Lahu, and 6.7% (1/15) of a sample of
Lisu
Lisu may refer to:
*Lisu people, an ethnic group of the mountainous regions of Yunnan (China), Arunachal Pradesh (India), northern Myanmar and Thailand
*Lisu language, Tibeto-Burman language spoken by the Lisu people
**Fraser script or Old Lisu A ...
Loloish
The Loloish languages, also known as Yi (like the Yi people) and occasionally Ngwi or Nisoic, are a family of 50–100 Tibeto-Burman languages spoken primarily in the Yunnan province of Southwestern China. They are most closely related to Burm ...
-speaking members of F*-M89 in northwestern Thailand have been found to be quite closely related in the paternal line, with the
TMRCA
A most recent common ancestor (MRCA), also known as a last common ancestor (LCA), is the most recent individual from which all organisms of a set are inferred to have descended. The most recent common ancestor of a higher taxon is generally assu ...
of their Y-DNA estimated to be 584 years before present. However, the aforementioned Y-chromosomes are only distantly related to instances of F*-M89 observed in samples of other populations of Thailand, including 5.6% (1/18) of a sample of Phuan from
Central Thailand
Central Thailand (Central Plain) (historically also known as Siam or Dvaravati) is one of the regions of Thailand, covering the broad alluvial plain of the Chao Phraya River. It is separated from northeast Thailand (Isan) by the Phetchabun Mount ...
Northeast Thailand
Northeast Thailand or Isan (Isan language, Isan/, ; ; also written as Isaan, Isarn, Issarn, Issan, Esan, or Esarn; from Pāli ''isāna'' or Sanskrit ईशान्य ''īśānya'' "northeast") consists of 20 provinces in northeastern Thai ...
Northeast Thailand
Northeast Thailand or Isan (Isan language, Isan/, ; ; also written as Isaan, Isarn, Issarn, Issan, Esan, or Esarn; from Pāli ''isāna'' or Sanskrit ईशान्य ''īśānya'' "northeast") consists of 20 provinces in northeastern Thai ...
. The TMRCA of the Loloish cluster from North Thailand and the Y-DNA of the Phuan individual from Central Thailand has been estimated to be 12,675 years before present. The TMRCA of the F*-M89 cluster from Northeast Thailand has been estimated to be 6,492 years before present. The TMRCA of all these F*-M89 individuals from Thailand has been estimated to be 16,006 years before present.Wibhu Kutanan, Rasmi Shoocongdej, Metawee Srikummool, ''et al.'' (2020), "Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand." ''European Journal of Human Genetics''. https://doi.org/10.1038/s41431-020-0693-x
There is also evidence of westward
Paleolithic
The Paleolithic or Palaeolithic ( years ago) ( ), also called the Old Stone Age (), is a period in human prehistory that is distinguished by the original development of stone tools, and which represents almost the entire period of human prehist ...
back-migration of F(xG,H,I,J,K) from South Asia, to
Iran
Iran, officially the Islamic Republic of Iran (IRI) and also known as Persia, is a country in West Asia. It borders Iraq to the west, Turkey, Azerbaijan, and Armenia to the northwest, the Caspian Sea to the north, Turkmenistan to the nort ...
,
Arabia
The Arabian Peninsula (, , or , , ) or Arabia, is a peninsula in West Asia, situated north-east of Africa on the Arabian plate. At , comparable in size to India, the Arabian Peninsula is the largest peninsula in the world.
Geographically, the ...
and
North East Africa
Northeast Africa, or Northeastern Africa, or Northern East Africa as it was known in the past, encompasses the countries of Africa situated in and around the Red Sea. The region is intermediate between North Africa and East Africa, and encompasses ...
, as well as subclades of haplogroup K to
South-East Europe
Southeast Europe or Southeastern Europe is a geographical sub-region of Europe, consisting primarily of the region of the Balkans, as well as adjacent regions and archipelagos. There are overlapping and conflicting definitions of the region, d ...
.
Neolithic migration into Europe from
Southwest Asia
West Asia (also called Western Asia or Southwest Asia) is the westernmost region of Asia. As defined by most academics, UN bodies and other institutions, the subregion consists of Anatolia, the Arabian Peninsula, Iran, Mesopotamia, the Armenia ...
Neolithic
The Neolithic or New Stone Age (from Ancient Greek, Greek 'new' and 'stone') is an archaeological period, the final division of the Stone Age in Mesopotamia, Asia, Europe and Africa (c. 10,000 BCE to c. 2,000 BCE). It saw the Neolithic Revo ...
remains, dating from circa 4000 BCE. These remains, according to Herrerra et al. (2012) showed a "greater genetic similarity" to "individuals from the modern Near East" than to modern Europeans. F(xG,H,I,J,K) ''may'' have been found in
Bronze Age
The Bronze Age () was a historical period characterised principally by the use of bronze tools and the development of complex urban societies, as well as the adoption of writing in some areas. The Bronze Age is the middle principal period of ...
remains from Europe, namely the individuals known as ''DEB 20'' and ''DEB 38'', who lived about 7,000–7,210 BP, and were found at the Derenburg Meerenstieg II site in Germany.
Three less certain cases, which have not been tested for all subclades of GHIJK, have been found among Neolithic remains in Europe. ''I0411'' (''Troc 4''), who lived 7,195–7,080 years BP, was found in the Els Trocs cave, near Bisaurri (modern Spain) – while haplogroups G, I1 (I-M450; I-S247) J, L1b2, Q1b1, Q1a2a, R1a1a1 (R-L449), R1b1a2b1a (R-M35) and T were ruled out, I2a1b1 and R1b1a2 were found in other remains from the same site (''Troc 5'' and ''Troc 2''). Similarly, three sets of remains from Hungary were not tested for all subclades of GHIJK: ''BAM 17'', ''BAM 26'' (both from Alsónyék Bátaszék, circa 7,850–7,675 years BP) and ''TOLM 3'' (7,030–7,230 BP, found in Tolna-Mözs).Jean Manco, 2016, ''DNA from the European Neolithic'' (1 March 2016). (An individual known to scholars as " Oase 1", who lived circa 37,800 years BP in Eastern Europe, was initially classified as belonging either to paragroup F(xGHIJK) or within K. However, subsequent research has revealed that Oase 1 belonged to K2a*.)
* found higher in
Philippines
The Philippines, officially the Republic of the Philippines, is an Archipelagic state, archipelagic country in Southeast Asia. Located in the western Pacific Ocean, it consists of List of islands of the Philippines, 7,641 islands, with a tot ...
, and
Indonesia
Indonesia, officially the Republic of Indonesia, is a country in Southeast Asia and Oceania, between the Indian Ocean, Indian and Pacific Ocean, Pacific oceans. Comprising over List of islands of Indonesia, 17,000 islands, including Sumatra, ...
Some cases reported amongst modern populations of Europeans, Native Americans and Pacific Islanders may be due to migration and admixture of F(xG,H,I,J,K), as a result of contact with South and/or South East Asia, during the early modern era (16th–19th Century).
Such examples include:
* low levels in
Polynesia
Polynesia ( , ) is a subregion of Oceania, made up of more than 1,000 islands scattered over the central and southern Pacific Ocean. The indigenous people who inhabit the islands of Polynesia are called Polynesians. They have many things in ...
;
* higher among
Seminole
The Seminole are a Native American people who developed in Florida in the 18th century. Today, they live in Oklahoma and Florida, and comprise three federally recognized tribes: the Seminole Nation of Oklahoma, the Seminole Tribe of Florida, ...
and
Boruca
The Boruca (also known as the Brunca or the Brunka) are an indigenous people living in Costa Rica. The tribe has about 2,660 members, most living on a reservation in the Puntarenas Province in southwestern Costa Rica, a few miles away from the ...
Native Americans;
* rare cases in the
Netherlands
, Terminology of the Low Countries, informally Holland, is a country in Northwestern Europe, with Caribbean Netherlands, overseas territories in the Caribbean. It is the largest of the four constituent countries of the Kingdom of the Nether ...
;
* two cases in
Portugal
Portugal, officially the Portuguese Republic, is a country on the Iberian Peninsula in Southwestern Europe. Featuring Cabo da Roca, the westernmost point in continental Europe, Portugal borders Spain to its north and east, with which it share ...
.
F* (M89*)
Basal F-M89* has been reported among 5.2% of males in India. A regional breakdown was provided by Chiaroni et al. (2009): 10% in
South India
South India, also known as Southern India or Peninsular India, is the southern part of the Deccan Peninsula in India encompassing the states of Andhra Pradesh, Karnataka, Kerala, Tamil Nadu and Telangana as well as the union territories of ...
; 8% in
Central India
Central India refers to a geographical region of India that generally includes the states of Chhattisgarh and Madhya Pradesh.
The Central Zonal Council, established by the Government of India, includes these states as well as Uttar Prades ...
; about 1.0% in
North India
North India is a geographical region, loosely defined as a cultural region comprising the northern part of India (or historically, the Indian subcontinent) wherein Indo-Aryans (speaking Indo-Aryan languages) form the prominent majority populati ...
and
Western India
Western India is a loosely defined region of India consisting of western states of India, Republic of India. The Ministry of Home Affairs (India), Ministry of Home Affairs in its Western Zonal Council Administrative divisions of India, Adminis ...
, as well as 5% in
Pakistan
Pakistan, officially the Islamic Republic of Pakistan, is a country in South Asia. It is the List of countries and dependencies by population, fifth-most populous country, with a population of over 241.5 million, having the Islam by country# ...
; 10% in
Sri Lanka
Sri Lanka, officially the Democratic Socialist Republic of Sri Lanka, also known historically as Ceylon, is an island country in South Asia. It lies in the Indian Ocean, southwest of the Bay of Bengal, separated from the Indian subcontinent, ...
; 4% among the
Tamang people
The Tamang people (; Devanagari: तामाङ; ''tāmāṅ'') are an ethnic group living in Nepal, Northeast India and southern Bhutan. In Nepal, they are concentrated in the central hilly and Himalayan regions and constituted over 1.6 mill ...
of
Nepal
Nepal, officially the Federal Democratic Republic of Nepal, is a landlocked country in South Asia. It is mainly situated in the Himalayas, but also includes parts of the Indo-Gangetic Plain. It borders the Tibet Autonomous Region of China Ch ...
; 2% in
Borneo
Borneo () is the List of islands by area, third-largest island in the world, with an area of , and population of 23,053,723 (2020 national censuses). Situated at the geographic centre of Maritime Southeast Asia, it is one of the Greater Sunda ...
and
Java
Java is one of the Greater Sunda Islands in Indonesia. It is bordered by the Indian Ocean to the south and the Java Sea (a part of Pacific Ocean) to the north. With a population of 156.9 million people (including Madura) in mid 2024, proje ...
; 4-5% in
Sulawesi
Sulawesi ( ), also known as Celebes ( ), is an island in Indonesia. One of the four Greater Sunda Islands, and the List of islands by area, world's 11th-largest island, it is situated east of Borneo, west of the Maluku Islands, and south of Min ...
and
Lembata
Lembata is an island in the Lesser Sunda Islands, also known as Lomblen or Kawela; it is the largest island of the Solor Archipelago, in the Lesser Sunda Islands, Indonesia. It forms a separate regency of the province of Nusa Tenggara Timur. Th ...
in
Southeast Asia
Southeast Asia is the geographical United Nations geoscheme for Asia#South-eastern Asia, southeastern region of Asia, consisting of the regions that are situated south of China, east of the Indian subcontinent, and northwest of the Mainland Au ...
.
In
Iran
Iran, officially the Islamic Republic of Iran (IRI) and also known as Persia, is a country in West Asia. It borders Iraq to the west, Turkey, Azerbaijan, and Armenia to the northwest, the Caspian Sea to the north, Turkmenistan to the nort ...
Xi'an
Xi'an is the list of capitals in China, capital of the Chinese province of Shaanxi. A sub-provincial city on the Guanzhong plain, the city is the third-most populous city in Western China after Chongqing and Chengdu, as well as the most populou ...
(1/34),
Haplogroup F-M89 has also been observed in Northeast Africa among two Christian period individuals, who were excavated on the
Nile
The Nile (also known as the Nile River or River Nile) is a major north-flowing river in northeastern Africa. It flows into the Mediterranean Sea. The Nile is the longest river in Africa. It has historically been considered the List of river sy ...
's
Fourth Cataract
The Cataracts of the Nile are shallow lengths (or whitewater rapids) of the Nile river, between Khartoum and Aswan, where the surface of the water is broken by many small boulders and stones jutting out of the river bed, as well as many rocky ...
Initial Upper Paleolithic
The Initial Upper Paleolithic (also IUP, ) covers the first stage of the Upper Paleolithic, during which modern human populations expanded throughout Eurasia.
Technology, art and distribution
The Initial Upper Paleolithic period is characteri ...
, dated to between 45,930 and 42,580 calibrated years before present, carry also the basal lineage of the Y chromosome haplogroup F-M89.
F1 (P91)
This subclade is defined by the SNP P91. It is most common in
Sri Lanka
Sri Lanka, officially the Democratic Socialist Republic of Sri Lanka, also known historically as Ceylon, is an island country in South Asia. It lies in the Indian Ocean, southwest of the Bay of Bengal, separated from the Indian subcontinent, ...
.
F2 (M427)
F2 Y-chromosomes have been reported among minorities from the borderlands of
South China
South China ( zh, s=, p=Huá'nán, j=jyut6 naam4) is a geographical and cultural region that covers the southernmost part of China. Its precise meaning varies with context. A notable feature of South China in comparison to the rest of China is ...
(
Yunnan
Yunnan; is an inland Provinces of China, province in Southwestern China. The province spans approximately and has a population of 47.2 million (as of 2020). The capital of the province is Kunming. The province borders the Chinese provinces ...
and
Guizhou
)
, image_skyline =
, image_caption =
, image_map = Guizhou in China (+all claims hatched).svg
, mapsize = 275px
, map_alt = Map showing the location of Guizhou Province
, map_caption = Map s ...
),
Thailand
Thailand, officially the Kingdom of Thailand and historically known as Siam (the official name until 1939), is a country in Southeast Asia on the Mainland Southeast Asia, Indochinese Peninsula. With a population of almost 66 million, it spa ...
,
Burma
Myanmar, officially the Republic of the Union of Myanmar; and also referred to as Burma (the official English name until 1989), is a country in northwest Southeast Asia. It is the largest country by area in Mainland Southeast Asia and ha ...
, and
Vietnam
Vietnam, officially the Socialist Republic of Vietnam (SRV), is a country at the eastern edge of mainland Southeast Asia, with an area of about and a population of over 100 million, making it the world's List of countries and depende ...
Kucong The Kucong () are an ethnic group in China. They are considered one of the poorest minorities in the country. There are around 80,000 Kucong people, living primarily in the Mojiang, Xinping, and Mengla counties of China's Yunnan Province. Some li ...
or Lahu Shi ("Yellow Lahu"), a subgroup of the Lahu.
F3 (M481)
The newly defined and rare subclade F3 (M481; previously F5) has been found in India and Nepal, among the
Tharu people
The Tharu people are an ethnic group living in the Terai in southern Nepal and northern India. They speak Tharu languages. They are recognized as an official ethnicity by the Government of Nepal. In the Indian Terai, they live foremost in Uttara ...
and in
Andhra Pradesh
Andhra Pradesh (ISO 15919, ISO: , , AP) is a States and union territories of India, state on the East Coast of India, east coast of southern India. It is the List of states and union territories of India by area, seventh-largest state and th ...
. F-M481 should not be confused with Haplogroup H2 (L279, L281, L284, L285, L286, M282, P96), which was previously misclassified under F-M89, as "F3".
Haplogroup GHIJK
Basal GHIJK has never been found, either in living males or ancient remains.
Subclades – including some major haplogroups – are widespread in modern populations of the
Central Asia
Central Asia is a region of Asia consisting of Kazakhstan, Kyrgyzstan, Tajikistan, Turkmenistan, and Uzbekistan. The countries as a group are also colloquially referred to as the "-stans" as all have names ending with the Persian language, Pers ...
,
Caucasus
The Caucasus () or Caucasia (), is a region spanning Eastern Europe and Western Asia. It is situated between the Black Sea and the Caspian Sea, comprising parts of Southern Russia, Georgia, Armenia, and Azerbaijan. The Caucasus Mountains, i ...
,
Middle East
The Middle East (term originally coined in English language) is a geopolitical region encompassing the Arabian Peninsula, the Levant, Turkey, Egypt, Iran, and Iraq.
The term came into widespread usage by the United Kingdom and western Eur ...
,
South Asia
South Asia is the southern Subregion#Asia, subregion of Asia that is defined in both geographical and Ethnicity, ethnic-Culture, cultural terms. South Asia, with a population of 2.04 billion, contains a quarter (25%) of the world's populatio ...
,
Europe
Europe is a continent located entirely in the Northern Hemisphere and mostly in the Eastern Hemisphere. It is bordered by the Arctic Ocean to the north, the Atlantic Ocean to the west, the Mediterranean Sea to the south, and Asia to the east ...
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South East Asia
Southeast Asia is the geographical United Nations geoscheme for Asia#South-eastern Asia, southeastern region of Asia, consisting of the regions that are situated south of China, east of the Indian subcontinent, and northwest of the Mainland Au ...
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Pacific Islands
The Pacific islands are a group of islands in the Pacific Ocean. They are further categorized into three major island groups: Melanesia, Micronesia, and Polynesia. Depending on the context, the term ''Pacific Islands'' may refer to one of several ...
subclade
In genetics, a subclade is a subgroup of a haplogroup.
Naming convention
Although human mitochondrial DNA (mtDNA) and Y chromosome DNA (Y-DNA) haplogroups and subclades are named in a similar manner, their names belong to completely separate syst ...
s are the branches of haplogroups. These subclades are also defined by single nucleotide polymorphisms (SNPs) or unique event polymorphisms (UEPs).
Phylogenetic trees
There are several confirmed and proposed phylogenetic trees available for haplogroup F-M89. The scientifically accepted one is the Y-Chromosome Consortium (YCC) one published in Karafet 2008 and subsequently updated. A draft tree that shows emerging science is provided by Thomas Krahn at the Genomic Research Center in
Houston, Texas
Houston ( ) is the List of cities in Texas by population, most populous city in the U.S. state of Texas and in the Southern United States. Located in Southeast Texas near Galveston Bay and the Gulf of Mexico, it is the county seat, seat of ...
. The International Society of Genetic Genealogy (ISOGG) also provides an amateur tree.
The Genomic Research Center draft tree
The Genomic Research Center's draft tree for haplogroup F-M89 is as follows. (Only the first three levels of subclades are shown.)
*F-M89 P14, M89, M213, P133, P134, P135, P136, P138, P139, P140, P141, P142, P145, P146, P148, P149, P151, P157, P158, P159, P160, P161, P163, P166, P187, P316, L132.1, L313, L498
**F-P91 P91, P104
**''F-M427'' M427, M428
**F-P96 P96, M282, L279, L281, L284, L285, L286
***F-L280 L280
**G-M201 M201, P257, L116, L154, L204, L240, L269, L402, L605, L769, L770, L836, L837, L1258, U2, U3, U6, U7, U12, U17, U20, U21, U23, U33
**H-M69 M69, M370, PAGES00049
**IJK L15, L16
YCC/ISOGG tree
This is the official scientific tree produced by the Y-Chromosome Consortium (YCC). The last major update was in 2008. Subsequent updates have been quarterly and biannual. The current version is a revision of the 2010 update.
* CF
**F (L132.1, M89/PF2746).
***F1 (P91, P104)
***F2 (M427, M428)
***F3 (M481)
***Macrohaplogroup GHIJK (F1329/M3658/PF2622/YSC0001299).
Phylogenetic history
Prior to 2002, there were in academic literature at least seven naming systems for the Y-Chromosome Phylogenetic tree. This led to considerable confusion. In 2002, the major research groups came together and formed the Y-Chromosome Consortium (YCC). They published a joint paper that created a single new tree that all agreed to use. Later, a group of citizen scientists with an interest in population genetics and genetic genealogy formed a working group to create an amateur tree aiming at being above all timely. The table below brings together all of these works at the point of the landmark 2002 YCC Tree. This allows a researcher reviewing older published literature to quickly move between nomenclatures.