Gonad Specific Virus
   HOME

TheInfoList



OR:

''Helicoverpa zea'' nudivirus 2 (HzNV-2, Hz-2V, gonad specific virus ''GSV or ''Heliothis zea'' nudivirus 2) is an enveloped,
rod-shaped Bacterial cellular morphologies are the shapes that are characteristic of various types of bacteria and often key to their identification. Their direct examination under a light microscope enables the classification of these bacteria (and archae ...
, nonoccluded, double stranded DNA (dsDNA) sexually transmitted virus whose natural host is the
corn earworm moth ''Helicoverpa zea, ''commonly known as the corn earworm, is a species (formerly in the genus ''Heliothis'') in the family Noctuidae. The larva of the moth ''Helicoverpa zea'' is a major agricultural pest. Since it is polyphagous (feeds on many d ...
. At about 440 by 90  nm, it is the causative agent of a sexually transmitted viral disease for the species. It was originally identified in a colony of corn earworm moths established and maintained in
Stoneville, Mississippi Stoneville is a census-designated place and unincorporated area, unincorporated community located in northeastern Washington County, Mississippi. Deer Creek (Mississippi), Deer Creek flows through Stoneville. A post office was established in 1 ...
, U.S. and was found to be responsible for the sterility of those infected. The virus does not always cause sterility, though. Many moths are asymptomatic carriers of the virus. Infected female hosts mate much more than those uninfected. With more mating events, the virus spreads to several males. Fertile female hosts may also pass the virus on through their eggs. HzNV-2 is closely related to HzNV-1; it is likely that HzNV-1 is a variant of HzNV-2 which exists in a persistent state in infected moths. HzNV-2 was discovered in 1995. Originally, symptomatic hosts were described as being "agonadal". Then, the virus was given the name "gonad specific virus". It was later given the name "''Helicoverpa zea'' nudivirus 2" because of the similar physical properties between it and HzNV-1, which had been described about 20 years prior. It is highly unlikely that the common effects of HzNV-2 on their hosts, malformed reproductive tissues causing infertility, would have been selected for establishing an ovarian cell line. It is more likely that those chosen moths were asymptomatic. Their common ancestor is believed to share a common ancestor with
baculovirus ''Baculoviridae'' is a family of viruses. Arthropods, among the most studied being Lepidoptera, Hymenoptera and Diptera, serve as natural hosts. Currently, 85 species are placed in this family, assigned to four genera. Baculoviruses are known ...
es, a family of viruses whose natural hosts are
decapod The Decapoda or decapods, from Ancient Greek δεκάς (''dekás''), meaning "ten", and πούς (''poús''), meaning "foot", is a large order of crustaceans within the class Malacostraca, and includes crabs, lobsters, crayfish, shrimp, and p ...
s,
arthropod Arthropods ( ) are invertebrates in the phylum Arthropoda. They possess an arthropod exoskeleton, exoskeleton with a cuticle made of chitin, often Mineralization (biology), mineralised with calcium carbonate, a body with differentiated (Metam ...
s,
Hymenoptera Hymenoptera is a large order of insects, comprising the sawflies, wasps, bees, and ants. Over 150,000 living species of Hymenoptera have been described, in addition to over 2,000 extinct ones. Many of the species are parasitic. Females typi ...
,
Diptera Flies are insects of the order Diptera, the name being derived from the Greek δι- ''di-'' "two", and πτερόν ''pteron'' "wing". Insects of this order use only a single pair of wings to fly, the hindwings having evolved into advance ...
, and
Lepidoptera Lepidoptera ( ) or lepidopterans is an order (biology), order of winged insects which includes butterflies and moths. About 180,000 species of the Lepidoptera have been described, representing 10% of the total described species of living organ ...
.


Pathology

The natural host of HzNV-2 is the corn earworm moth (''Helicoverpa zea''). The virus is spread to offspring through their mothers' eggs (
Vertical transmission Vertical transmission of symbionts is the transfer of a microbial symbiont from the parent directly to the offspring.  Many metazoan species carry symbiotic bacteria which play a mutualistic, commensal, or parasitic role.  A symbiont is acq ...
) and through mating attempts between adult moths (
Horizontal transmission Horizontal transmission is the transmission of organisms between biotic and/or abiotic members of an ecosystem that are not in a parent-progeny relationship. Because the evolutionary fate of the agent is not tied to reproductive success of the host ...
). Infected moths are referred to as either asymptomatic (AS) or agonadal (AG), due to the virus causing larvae to never form functional gonads. HzNV-2 is very common among wild moths, and it is very able to survive in host populations.


Asymptomatic carriers

Persistent replication of HzNV-2 in insect hosts make
asymptomatic Asymptomatic (or clinically silent) is an adjective categorising the medical conditions (i.e., injuries or diseases) that patients carry but without experiencing their symptoms, despite an explicit diagnosis (e.g., a positive medical test). P ...
(AS),
fertile Fertility in colloquial terms refers the ability to have offspring. In demographic contexts, fertility refers to the actual production of offspring, rather than the physical capability to reproduce, which is termed fecundity. The fertility rate is ...
carriers. Unlike baculoviruses, the productive replication of this virus does not kill the hosts. Instead, it causes malformed
gonad A gonad, sex gland, or reproductive gland is a Heterocrine gland, mixed gland and sex organ that produces the gametes and sex hormones of an organism. Female reproductive cells are egg cells, and male reproductive cells are sperm. The male gon ...
s, sterilizing the hosts. When healthy females mate with infected males, the offspring are infected through the
egg An egg is an organic vessel grown by an animal to carry a possibly fertilized egg cell (a zygote) and to incubate from it an embryo within the egg until the embryo has become an animal fetus that can survive on its own, at which point the ...
s ( transovarially). Typically, some of the offspring are
infertile In biology, infertility is the inability of a male and female organism to reproduce. It is usually not the natural state of a healthy organism that has reached sexual maturity, so children who have not undergone puberty, which is the body's sta ...
while others are infected, AS carriers. Whether or not the offspring is AS or agonadal is dependent on how much viral particle content they receive from their mothers. The amount of virus mothers spread to their children increases over the time of infection. In fact, most infected,
wild Wild, wild, wilds or wild may refer to: Common meanings * Wilderness, a wild natural environment * Wildlife, an undomesticated organism * Wildness, the quality of being wild or untamed Art, media and entertainment Film and television * ''Wild ...
female moths are fertile and AS carriers, and infected females account for up to 69% of all wild females. When they mate with sterile, infected moths are still able to spread the virus through mating. After mating, the virus productively replicates inside the females, which makes the viral dose increase on successive oviposition days. These abilities to spread differently through hosts that are both asymptomatic and symptomatic and that spread the virus vertically to offspring and horizontally to mates makes HzNV-2 very fit and able to coexist well in the wild with its host.


Symptomatic hosts

HzNV-2 is able to change the molecular processes of their hosts. Though infected larvae appear to be very normal, when they emerge from their cocoons as adults, they may be without gonads. This condition is described as being "agonadal". The reproductive systems of both sexes are malformed as appear as a large "Y" shape. Female hosts infected through vertical transmission often do not develop several reproductive structures, including their
ovaries The ovary () is a gonad in the female reproductive system that produces ova; when released, an ovum travels through the fallopian tube/oviduct into the uterus. There is an ovary on the left and the right side of the body. The ovaries are endocr ...
,
bursa copulatrix Bursa () is a city in northwestern Turkey and the administrative center of Bursa Province. The list of cities in Turkey, fourth-most populous city in Turkey and List of largest cities and towns in Turkey, second-most populous in the Marmara Regio ...
,
accessory gland This glossary of entomology describes terms used in the formal study of insect species by entomologists. A–C A synthetic chlorinated hydrocarbon insecticide Insecticides are pestic ...
s, and
spermatheca The spermatheca (pronounced : spermathecae ), also called ''receptaculum seminis'' (: ''receptacula seminis''), is an organ of the female reproductive tract in insects, e.g. ants, bees, some molluscs, Oligochaeta worms and certain other in ...
. In addition, their common and lateral
oviduct The oviduct in vertebrates is the passageway from an ovary. In human females, this is more usually known as the fallopian tube. The eggs travel along the oviduct. These eggs will either be fertilized by spermatozoa to become a zygote, or will dege ...
s are malformed and enlarged. Viral replication in female gonads result in
hypertrophy Hypertrophy is the increase in the volume of an organ or tissue due to the enlargement of its component cells. It is distinguished from hyperplasia, in which the cells remain approximately the same size but increase in number. Although hypertro ...
of the oviducts and proliferation of the cells making up these tissues. These enlargements appear to begin as early as their last instar as larvae. The lateral oviducts of healthy, adult female moths areone or two cell layers; those of infected female moths have four to eight layers instead. These enlargements may increase virus production. HzNV-2 also causes the formation of a "viral plug" that prolongs their mating behaviors and serves as a source of contamination for males attempting to mate. Infected females also produce five to seven times more
sex pheromone Sex pheromones are pheromones released by an organism to attract an individual of the same species, encourage them to mate with them, or perform some other function closely related with sexual reproduction. Sex pheromones specifically focus on ind ...
than those uninfected and attract two times as many mates. While mating, female moths will continue to call to other males, uncharacteristic of the species. Since the virus can spread horizontally through
sex Sex is the biological trait that determines whether a sexually reproducing organism produces male or female gametes. During sexual reproduction, a male and a female gamete fuse to form a zygote, which develops into an offspring that inheri ...
, this transmits it quicker. Infected males may grow to have small, unfused
testes A testicle or testis ( testes) is the gonad in all male bilaterians, including humans, and is homologous to the ovary in females. Its primary functions are the production of sperm and the secretion of androgens, primarily testosterone. The ...
, no
seminal vesicle The seminal vesicles (also called vesicular glands or seminal glands) are a pair of convoluted tubular accessory glands that lie behind the urinary bladder of male mammals. They secrete fluid that largely composes the semen. The vesicles are 5 ...
s, vas deferencia, or
accessory gland This glossary of entomology describes terms used in the formal study of insect species by entomologists. A–C A synthetic chlorinated hydrocarbon insecticide Insecticides are pestic ...
s. Accessory glands produce pheromonostatic peptide (PSP), which inhibits the amount of mating pheromones females make. Without PSP, female moths continue to attract more partners. The tissues needed for the initiation of
copulation Sexual intercourse (also coitus or copulation) is a sexual activity typically involving the insertion of the erect male penis inside the female vagina and followed by thrusting motions for sexual pleasure, reproduction, or both.Sexual inte ...
and the transfer of reproductive fluids during mating function normally. The lumen of the
primary simplex Primary or primaries may refer to: Arts, entertainment, and media Music Groups and labels * Primary (band), from Australia * Primary (musician), hip hop musician and record producer from South Korea * Primary Music, Israeli record label Works ...
of infected male moths is greatly filled with virus particles that they very likely transmit to healthy females without fertilizing them.


Genome

The
genome A genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as ...
of HzNV-2 is a circular double-stranded DNA molecule of 231,621 bp, making it the largest dsDNA insect virus. It has a
guanine-cytosine content In molecular biology and genetics, GC-content (or guanine-cytosine content) is the percentage of nitrogenous bases in a DNA or RNA molecule that are either guanine (G) or cytosine (C). This measure indicates the proportion of G and C bases out of ...
of 41.9%. It contains 376
open reading frame In molecular biology, reading frames are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible reading frames ...
s (ORFs) coding more than 60
amino acid Amino acids are organic compounds that contain both amino and carboxylic acid functional groups. Although over 500 amino acids exist in nature, by far the most important are the 22 α-amino acids incorporated into proteins. Only these 22 a ...
s. Of the 113 ORFs that are likely to encode
protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residue (biochemistry), residues. Proteins perform a vast array of functions within organisms, including Enzyme catalysis, catalysing metab ...
s, 66 are on the forward strand of DNA, the other 47 on the reverse. All of these are evenly arranged, producing 29 clusters of 1 to 6 ORFs. The average ORF is 1.4 kb in length, though the sizes range from 189 bp and 5.7 kb. The
gene density In genetics, the gene density of an organism's genome is the ratio of the number of genes per number of base pairs, usually written in terms of a million base pairs, or ''megabase'' (Mb). The human genome has a gene density of 11-15 genes/Mb, while ...
of HzNV-2 is one gene per 2.05 kb with a coding density of 68%. The HsNV-2 genome shares homology with 16 conserved baculovirus core genes. Since HzNV-1 shares all of these homologous genes with baculovirus genome and four more, it is very likely that HsNV-1 and HzNV-2 have a recent common ancestor and their common ancestor diverged from a common ancestor of the baculoviruses. 75 of the virus' 113 putative genes have poor or no homology to any other known genes, except with genes of HzNV-1. Of the 38 genes with homologues, 6 are involved in
DNA replication In molecular biology, DNA replication is the biological process of producing two identical replicas of DNA from one original DNA molecule. DNA replication occurs in all life, living organisms, acting as the most essential part of heredity, biolog ...
, 4 in
transcription Transcription refers to the process of converting sounds (voice, music etc.) into letters or musical notes, or producing a copy of something in another medium, including: Genetics * Transcription (biology), the copying of DNA into RNA, often th ...
, 5 in
nucleic acid metabolism Nucleic acid metabolism refers to the set of chemical reactions involved in the synthesis and degradation of nucleic acids (DNA and RNA). Nucleic acids are polymers (biopolymers) composed of monomers called nucleotides. Nucleotide synthesis is an ...
, 3 structural proteins.


Comparison to HsNV-1

Both viruses can replicate in
cell culture Cell culture or tissue culture is the process by which cell (biology), cells are grown under controlled conditions, generally outside of their natural environment. After cells of interest have been Cell isolation, isolated from living tissue, ...
s, though only HzNV-2 can replicate in an insect host. The genomes of HzNV-2 and HzNV-1 are very similar, sharing a 93.5%
sequence identity In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences. Align ...
. Of the 113 putative genes, the viruses share 97 that are not overlapping or inverted. There is a 5.1 kb area at 174.7-179.8 kb region of HsNV-2 that has no equivalent in the genome of HzNV-1. In this region of HsNV-2, three ORFs are found: Hz2V008, Hz2V091, and Hz2V092. In total, 14 ORFs identified in HsNV-2 are not found in the HzNV-1 genome. None of which have been determined to share sequence homology with any genes of known function.


Genes related to DNA replication and repair

The
C-terminal The C-terminus (also known as the carboxyl-terminus, carboxy-terminus, C-terminal tail, carboxy tail, C-terminal end, or COOH-terminus) is the end of an amino acid chain (protein or polypeptide), terminated by a free carboxyl group (-COOH). When t ...
region of Hz2V008 has homology with the
catalytic Catalysis () is the increase in reaction rate, rate of a chemical reaction due to an added substance known as a catalyst (). Catalysts are not consumed by the reaction and remain unchanged after it. If the reaction is rapid and the catalyst ...
domain for
integrase Retroviral integrase (IN) is an enzyme An enzyme () is a protein that acts as a biological catalyst by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme ...
and recombinase, which has DNA breaking and rejoining activity. This region of HsNV-2's genome has similarity to the INT_REC_C conserved domain. This domain is related to phage integrase and
bacterial Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the ...
and yeast recombinase. It also contains motif cores for
DNA binding site DNA binding sites are a type of binding site found in DNA where other molecules may bind. DNA binding sites are distinct from other binding sites in that (1) they are part of a DNA sequence (e.g. a genome) and (2) they are bound by DNA-binding ...
s,
catalytic residue In biology and biochemistry, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction. The active site consists of amino acid residues that form temporary bonds with the substrate, the ''binding si ...
s, the
active site In biology and biochemistry, the active site is the region of an enzyme where substrate molecules bind and undergo a chemical reaction. The active site consists of amino acid residues that form temporary bonds with the substrate, the ''binding s ...
s, and
topoisomerase DNA topoisomerases (or topoisomerases) are enzymes that catalyze changes in the topological state of DNA, interconverting relaxed and supercoiled forms, linked (catenated) and unlinked species, and knotted and unknotted DNA. Topological issues in ...
. The best similarity to this gene comes from monodon baculovirus and ''Gryllus bimaculatus'' nudivirus (GbNV), suggesting a possible common ancestor. The C-terminal region of Hz2V018 has homology to
DNA polymerase A DNA polymerase is a member of a family of enzymes that catalyze the synthesis of DNA molecules from nucleoside triphosphates, the molecular precursors of DNA. These enzymes are essential for DNA replication and usually work in groups to create t ...
. It has great similarity to the ''Oryctes rhinoceros'' nudivirus' (OrNV) DNA polymerase and the DNA-dependent DNA polymerase type-B family ( POLBc) conserved domain, which is linked with DNA binding,
polymerase In biochemistry, a polymerase is an enzyme (Enzyme Commission number, EC 2.7.7.6/7/19/48/49) that synthesizes long chains of polymers or nucleic acids. DNA polymerase and RNA polymerase are used to assemble DNA and RNA molecules, respectively, by ...
, and 3'-5'
exonuclease Exonucleases are enzymes that work by cleaving nucleotides one at a time from the end (exo) of a polynucleotide chain. A hydrolyzing reaction that breaks phosphodiester bonds at either the 3′ or the 5′ end occurs. Its close relative is th ...
activity. This region also contains the well-conserved nucleotide binding motif,
K(3x)NS(x)YG(2x)G K, or k, is the eleventh letter of the Latin alphabet, used in the modern English alphabet, the alphabets of other western European languages and others worldwide. Its name in English is ''kay'' (pronounced ), plural ''kays''. The letter ...
, at 842-853 aa and the polymerase catalytic motif, YxDTD, at 892-897 aa. The 256 aa long
N-terminal The N-terminus (also known as the amino-terminus, NH2-terminus, N-terminal end or amine-terminus) is the start of a protein or polypeptide, referring to the free amine group (-NH2) located at the end of a polypeptide. Within a peptide, the amin ...
region of Hz2V029 is similar to the C-terminal region of the SbcC conserved domain, a
prokaryotic A prokaryote (; less commonly spelled procaryote) is a single-celled organism whose cell lacks a nucleus and other membrane-bound organelles. The word ''prokaryote'' comes from the Ancient Greek (), meaning 'before', and (), meaning 'nut' ...
ortholog of the
rad50 DNA repair protein RAD50, also known as RAD50, is a protein that in humans is encoded by the ''RAD50'' gene. Function The protein encoded by this gene is highly similar to ''Saccharomyces cerevisiae'' Rad50, a protein involved in DNA double- ...
gene of
human Humans (''Homo sapiens'') or modern humans are the most common and widespread species of primate, and the last surviving species of the genus ''Homo''. They are Hominidae, great apes characterized by their Prehistory of nakedness and clothing ...
s which has
ATPase ATPases (, Adenosine 5'-TriPhosphatase, adenylpyrophosphatase, ATP monophosphatase, triphosphatase, ATP hydrolase, adenosine triphosphatase) are a class of enzymes that catalyze the decomposition of ATP into ADP and a free phosphate ion or ...
activity and is a critical part of DNA double-strand break repair. In totality, the gene is 823 aa long. This gene is most similar to the GbNV putative desmoplakin and ''Spodoptera frugiperda'' ascovirus 1a SbcC/ATPase domain. The C-terminal region of Hz2V038 is similar to a
poxvirus ''Poxviridae'' is a family of double-stranded DNA viruses. Vertebrates and arthropods serve as natural hosts. The family contains 22 genera that are assigned to two subfamilies: ''Chordopoxvirinae'' and ''Entomopoxvirinae''. ''Entomopoxvirinae'' ...
D5 protein and it has homology
DNA helicase Helicases are a class of enzymes that are vital to all organisms. Their main function is to unpack an organism's genetic material. Helicases are motor proteins that move directionally along a nucleic double helix, separating the two hybridized ...
, essential for
virus replication Viral replication is the formation of biological viruses during the infection process in the target host cells. Viruses must first get into the cell before viral replication can occur. Through the generation of abundant copies of its genome an ...
. The most homologous gene is found in the ''Ectoropis oblique'' nucleopolyhedrovirus (NPV). Hz2V070 has the most similarity to the
xeroderma pigmentosum Xeroderma pigmentosum (XP) is a genetic disorder in which there is a decreased ability to repair DNA damage such as that caused by ultraviolet (UV) light. Symptoms may include a severe sunburn after only a few minutes in the sun, freckling in su ...
G (XPG) enzyme, which is related to other enzymes playing roles in nucleotide-excision repair and
transcription-coupled repair Nucleotide excision repair is a DNA repair mechanism. DNA damage occurs constantly because of chemicals (e.g. intercalating agents), radiation and other mutagens. Three excision repair pathways exist to repair single stranded DNA damage: Nucleot ...
of oxidative DNA damage.


Genes related to RNA transcription

Hz2V028 shows homology with the baculovirus very late expression factor 1 ('' vlf-1''), necessary for burst expression of the genes ''
polyhedrin ''For the three dimensional shape, see Polyhedron'' Polyhedrins are a type of viral protein that form occlusion bodies (also called polyhedra), large structures that protect the virus particles from the outside environment for extended periods ...
'' and '' p10''. ''Vlf-1'' is a transcription initiation factor that recognizes and binds to DTAAG, a promoter motif of baculovirus very late genes, though it is likely Hz2V028 recognizes a different motif. Hz2V040 is closest in similarity to '' Spodoptera furugiperda'' NPV ''lef-5''. It has characteristic
zinc Zinc is a chemical element; it has symbol Zn and atomic number 30. It is a slightly brittle metal at room temperature and has a shiny-greyish appearance when oxidation is removed. It is the first element in group 12 (IIB) of the periodic tabl ...
ribbon motif for DNA binding, and it likely has transcriptional initiation activity. Hz2V043 most likely plays a role in
mRNA In molecular biology, messenger ribonucleic acid (mRNA) is a single-stranded molecule of RNA that corresponds to the genetic sequence of a gene, and is read by a ribosome in the process of Protein biosynthesis, synthesizing a protein. mRNA is ...
5'-capping and is likely able to from stable enzyme-nucleotide monophosphate complexes for guanylation, like GbNV ''lef-4''. Hz2V051 is most similar to GbNV ''lef-8'', which helps encode one of the main catalytic subunits of the baculovirus
RNA polymerase In molecular biology, RNA polymerase (abbreviated RNAP or RNApol), or more specifically DNA-directed/dependent RNA polymerase (DdRP), is an enzyme that catalyzes the chemical reactions that synthesize RNA from a DNA template. Using the e ...
. Hz2V063 shows homology to the N-terminal region of the nudivirus and baculovirus LEF-9. It may, then, have a part in RNA polymerase.


Genes related to virus entry

Hz2V026 is most similar to GbNV ''pif-2'' and ''Autographa californica'' multiple nucleopolyhedrovirus (AcMPV), and it may form
disulfide bond In chemistry, a disulfide (or disulphide in British English) is a compound containing a functional group or the anion. The linkage is also called an SS-bond or sometimes a disulfide bridge and usually derived from two thiol groups. In inor ...
s and be a structural component of the occlusion-derived
virus envelope A viral envelope is the outermost layer of many types of viruses. It protects the genetic material in their life cycle when traveling between host cells. Not all viruses have envelopes. A viral envelope protein or E protein is a protein in the env ...
. zz Hz2V053 is a homologue of baculovirus ''pif-3'' and GbNV ''pif-3''. It contains an N-terminal
transmembrane A transmembrane protein is a type of integral membrane protein that spans the entirety of the cell membrane. Many transmembrane proteins function as gateways to permit the transport of specific substances across the membrane. They frequently u ...
domain. Hz2V082 is a homologue of the GbNV ''pif-1'' gene and is very similar to the ''Spodoptera littoralis'' NPV (SlNPV). It is likely responsible for oral infectivity through directly binding the virus particle to host cells. Hz2V106 shows homology with baculovirus ''p74'' and likely mediates the specific binding of the virus particle to host cells by aiding the formation of disulfide bonds inside its C-terminal transmembrane's membrane anchoring domain.


Genes related to nucleic acid metabolism

Hz2V035 is most similar to ''Bombyx mori'' thymidlylate synthase and is likely involved in the synthesis of
dTMP Thymidine monophosphate (TMP), also known as thymidylic acid (conjugate base thymidylate), deoxythymidine monophosphate (dTMP), or deoxythymidylic acid (conjugate base deoxythymidylate), is a nucleotide that is used as a monomer in DNA. It is an ...
precursors from dUTP. Hz2V047 and Hz2V065 are most similar to SlNPV sibonucleotide reductase large (RR1) and small subunit (RR2) respectively. RR1 and RR2 help reduce ribonucleotides to deoxyribonucleotides in order to produce precursors of DNA. Hz2V066 is most homologous with the ''Bombyx mori'' serine hydroxymethyltransferase (SHMT), which catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate. Hz2V067 is most similar to ''
Drosophila melanogaster ''Drosophila melanogaster'' is a species of fly (an insect of the Order (biology), order Diptera) in the family Drosophilidae. The species is often referred to as the fruit fly or lesser fruit fly, or less commonly the "vinegar fly", "pomace fly" ...
'' deoxynucleotide kinase (dNK). dNK catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates and it is a key enzyme involved in salvaging deoxyribonucleosides. Hz2V069 encodes a protein 350 aa long and is most homologous with ''
Culex quinquefasciatus ''Culex quinquefasciatus'' (originally named ''Culex fatigans''), commonly known as the southern house mosquito, is a medium-sized mosquito found in tropical and subtropical regions of the world. It is a vector of ''Wuchereria bancrofti'', avian ...
''
dUTPase In Enzymology, a dUTP diphosphatase () is an enzyme that catalyzes the chemical reaction :dUTP + H2O \rightleftharpoons dUMP + diphosphate Thus, the two substrates of this enzyme are dUTP and H2O, whereas its two products are dUMP and diph ...
. dUTPase helps minimize the misincoporation of uracil into virus DNA during replication, and it may be a key enzyme in HzNV-2 replication and latency in asymptomatic carriers. Hz2V093 is similar to HzNV-1 ORF65, and it may play a role in RNA capping while not being essential for virus replication. Hz2V111 is a homologue of ''
Heliothis virescens ''Chloridea virescens'', commonly known as the tobacco budworm, is a moth of the family Noctuidae found throughout the eastern and southwestern United States along with parts of Central America and South America. It is a major pest of field crop ...
''
dihydrofolate reductase Dihydrofolate reductase, or DHFR, is an enzyme that reduces dihydrofolic acid to tetrahydrofolic acid, using NADPH as an electron donor, which can be converted to the kinds of tetrahydrofolate cofactors used in one-carbon transfer chemistry. ...
(DHFR) and to
herpesvirus ''Orthoherpesviridae'', previously named and more widely known as ''Herpesviridae'', is a large family of DNA viruses that cause infections and certain diseases in animals, including humans. The members of this family are commonly known as herp ...
DHFR. DHFR reduces
dihydrofolate Dihydrofolic acid (conjugate base dihydrofolate) (DHF) is a folic acid ( vitamin B9) derivative which is converted to tetrahydrofolic acid by dihydrofolate reductase. Since tetrahydrofolate is needed to make both purines and pyrimidines, which a ...
into
tetrahydrofolate Tetrahydrofolic acid (THFA), or tetrahydrofolate, is a folic acid derivative. Metabolism In humans, tetrahydrofolic acid is produced from dihydrofolic acid by dihydrofolate reductase. This reaction is inhibited by methotrexate. It is convert ...
, which is necessary for DNA synthesis to take place.


Genes related to structural proteins

Hz2V062 is most similar to GbNV ''odv-e56''. Hz2V089 is homologous to baculovirus ''vp91''. Hz2V108 is a homologue of MBV 38K protein gene, which is crucial for
nucleocapsid A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or ma ...
assembly.


Auxiliary and undefined genes

Hz2V007 is very similar to the ''
Bombyx mori ''Bombyx mori'', commonly known as the domestic silk moth, is a moth species belonging to the family Bombycidae. It is the closest relative of '' Bombyx mandarina'', the wild silk moth. Silkworms are the larvae of silk moths. The silkworm is of ...
''
carboxylesterase The enzyme carboxylesterase (or carboxylic-ester hydrolase, EC 3.1.1.1; systematic name carboxylic-ester hydrolase) catalysis, catalyzes reactions of the following form: :a Ester, carboxylic ester + H2O \rightleftharpoons an Alcohol (chemistry), ...
(COE) and, to a lesser degree, ''
Anopheles gambiae The ''Anopheles gambiae'' complex consists of at least seven morphologically indistinguishable species of mosquitoes in the genus ''Anopheles''. The complex was recognised in the 1960s and includes the most important vectors of malaria in sub- ...
'' juvenile hormone esterase (JHE). This high similarity may mean that HzNV-2 can control the
physiology Physiology (; ) is the science, scientific study of function (biology), functions and mechanism (biology), mechanisms in a life, living system. As a branches of science, subdiscipline of biology, physiology focuses on how organisms, organ syst ...
of infected hosts through the regulation of
Juvenile hormone Juvenile hormones (JHs) are a group of acyclic sesquiterpenoids that regulate many aspects of insect physiology. The first discovery of a JH was by Vincent Wigglesworth. JHs regulate development, reproduction, diapause, and polyphenisms. In ...
levels and the level of gene expression occurring at different stages of their development. In addition, this gene more closely resembles a host gene than a viral gene. Hz2V012 and Hz2V015 encode
inhibitor of apoptosis Inhibitors of apoptosis are a group of proteins that mainly act on the intrinsic pathway that block programmed cell death, which can frequently lead to cancer or other effects for the cell if mutated or improperly regulated. Many of these inhibito ...
(IAP) homologues. Hz2V023 shows homology to the
major facilitator superfamily The major facilitator superfamily (MFS) is a Protein superfamily, superfamily of membrane transport proteins that facilitate movement of small solutes across cell membranes in response to chemiosmosis, chemiosmotic gradients. Function The major ...
(MFS), specifically ''
Aedes aegypti ''Aedes aegypti'' ( or from Greek 'hateful' and from Latin, meaning 'of Egypt'), sometimes called the Egyptian mosquito, dengue mosquito or yellow fever mosquito, is a mosquito that spreads diseases like dengue fever, yellow fever, malar ...
''
adenylate cyclase Adenylate cyclase (EC 4.6.1.1, also commonly known as adenyl cyclase and adenylyl cyclase, abbreviated AC) is an enzyme with systematic name ATP diphosphate-lyase (cyclizing; 3′,5′-cyclic-AMP-forming). It catalyzes the following reaction: :A ...
. MFS is a group of transporter genes found exclusively in
living organisms An organism is any living thing that functions as an individual. Such a definition raises more problems than it solves, not least because the concept of an individual is also difficult. Many criteria, few of them widely accepted, have been pro ...
and this virus. They code for carrier proteins involved in uptaking and effluxing
small molecule In molecular biology and pharmacology, a small molecule or micromolecule is a low molecular weight (≤ 1000 daltons) organic compound that may regulate a biological process, with a size on the order of 1 nm. Many drugs are small molecules; ...
s, particularly
sugar Sugar is the generic name for sweet-tasting, soluble carbohydrates, many of which are used in food. Simple sugars, also called monosaccharides, include glucose Glucose is a sugar with the Chemical formula#Molecular formula, molecul ...
and drugs respectively. This gene more closely resembles host genes than viral genes. In fact, an MFS gene has never before been found in a viral genome; it is found exclusively in living species genomes. The protein it encodes for likely facilitates the enhanced
metabolism Metabolism (, from ''metabolē'', "change") is the set of life-sustaining chemical reactions in organisms. The three main functions of metabolism are: the conversion of the energy in food to energy available to run cellular processes; the co ...
necessary for the
cell proliferation Cell proliferation is the process by which ''a cell grows and divides to produce two daughter cells''. Cell proliferation leads to an exponential increase in cell number and is therefore a rapid mechanism of tissue growth. Cell proliferation ...
in the infected hosts' reproductive tissues Hz2V034 is relatively similar to the guanosine monophosphate kinase (GMPK) and most homologous with the hypothetical protein of monodon baculovirus. GMPK transfers the terminal phosphate group of ATP and GMP in order to make ADP and
GDP Gross domestic product (GDP) is a monetary measure of the total market value of all the final goods and services produced and rendered in a specific time period by a country or countries. GDP is often used to measure the economic performance o ...
, a critical step in the biosynthesis of GTP. Hz2V039 has homology with the baculovirus 19K protein gene ( AcMNPV ORF 96) and is most homologous with GbNV ORF 87. Hz2V068 encodes a zinc-dependent matrix
metalloprotease A metalloproteinase, or metalloprotease, is any protease enzyme whose catalytic mechanism involves a metal. An example is ADAM12 which plays a significant role in the fusion of muscle cells during embryo development, in a process known as myoge ...
(ZnMc_MMP) and is most similar to ''
Acyrthosiphon pisum ''Acyrthosiphon pisum'', commonly known as the pea aphid (and colloquially known as the green dolphin, pea louse, and clover louse), is a sap-sucking insect in the family Aphididae. It feeds on several species of legumes (plant family Fabaceae) w ...
'' MMP. This gene most more closely resembles host genes than viral genes. It likely synthesizes zinc and calcium dependent enzymes to be
proenzyme In biochemistry, a zymogen (), also called a proenzyme (), is an inactive precursor of an enzyme. A zymogen requires a biochemical change (such as a hydrolysis reaction revealing the active site, or changing the configuration to reveal the acti ...
s in
connective tissue Connective tissue is one of the four primary types of animal tissue, a group of cells that are similar in structure, along with epithelial tissue, muscle tissue, and nervous tissue. It develops mostly from the mesenchyme, derived from the mesod ...
s. MMPs are important in
cellular differentiation Cellular differentiation is the process in which a stem cell changes from one type to a differentiated one. Usually, the cell changes to a more specialized type. Differentiation happens multiple times during the development of a multicellula ...
,
morphogenesis Morphogenesis (from the Greek ''morphê'' shape and ''genesis'' creation, literally "the generation of form") is the biological process that causes a cell, tissue or organism to develop its shape. It is one of three fundamental aspects of deve ...
, and pericellular
proteolysis Proteolysis is the breakdown of proteins into smaller polypeptides or amino acids. Protein degradation is a major regulatory mechanism of gene expression and contributes substantially to shaping mammalian proteomes. Uncatalysed, the hydrolysis o ...
of the
extracellular matrix In biology, the extracellular matrix (ECM), also called intercellular matrix (ICM), is a network consisting of extracellular macromolecules and minerals, such as collagen, enzymes, glycoproteins and hydroxyapatite that provide structural and bio ...
and other
cell surface molecule Cell adhesion molecules (CAMs) are a subset of cell surface proteins that are involved in the binding of cells with other cells or with the extracellular matrix (ECM), in a process called cell adhesion. In essence, CAMs help cells stick to each ...
s. Hz2V096 is homologous to AcMNPV ORF81 (''ac81'') but is most similar to GbNV ORF14. Its function is unknown, but ''ac81'' is considered a baculovirus core gene Hz2V099 is similar to a prokaryotic
acetylesterase In biochemistry, an acetylesterase () is a class of enzyme which catalyzes the hydrolysis of acetic esters into an alcohol and acetic acid: :\ce \quad \xrightarrowtext\quad \ce This enzyme belongs to the family of hydrolases, specifically thos ...
(Aes), a member of the
esterase In biochemistry, an esterase is a class of enzyme that splits esters into an acid and an alcohol in a chemical reaction with water called hydrolysis (and as such, it is a type of hydrolase). A wide range of different esterases exist that differ ...
/
lipase In biochemistry, lipase ( ) refers to a class of enzymes that catalyzes the hydrolysis of fats. Some lipases display broad substrate scope including esters of cholesterol, phospholipids, and of lipid-soluble vitamins and sphingomyelinases; howe ...
family that plays a role in the control of a
transcriptional activator A transcriptional activator is a protein (transcription factor) that increases transcription of a gene or set of genes. Activators are considered to have ''positive'' control over gene expression, as they function to promote gene transcription and ...
. Hz2V110 is homologous to
serine/threonine protein kinase A serine/threonine protein kinase () is a kinase enzyme, in particular a protein kinase, that phosphorylates the OH group of the amino-acid residues serine or threonine, which have similar side chains. At least 350 of the 500+ human pro ...
(S_TPK). S_TPK catalyzes phosphorylation of serine and threonine residues, which is important to cellular function regulation, particularly the phosphorylation of protein involved in signal transduction. The combination of Hz2V007, Hz2V023, and Hz2V068 may account for the malformation of infected tissues and the unique pathology of the virus.


References

{{Taxonbar, from=Q96380488 Nudiviridae Insect viral diseases