Carlavirus
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''Carlavirus'', formerly known as the "
Carnation latent virus Carnation latent virus (CLV) is a plant pathogenic virus of the family ''Betaflexiviridae''. External linksICTVdB - The Universal Virus Database: Carnation latent virusvirus A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Viruses are ...
es in the order ''
Tymovirales ''Tymovirales'' is an order of viruses with five families. The group consists of viruses which have positive-sense, single-stranded RNA genomes. Their genetic material is protected by a special coat protein. Description Tymoviruses are mainly ...
'', in the family ''
Betaflexiviridae ''Betaflexiviridae'' is a family of viruses A virus is a submicroscopic infectious agent that replicates only inside the living cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including ...
''. Plants serve as natural hosts. There are 74 species in this genus. Diseases associated with this genus include: mosaic and ringspot symptoms.


Description

''Carlavirus'' is described in the 9th report of the ICTV (2009). The genus is characterised by having six ORFs (
open reading frame In molecular biology, reading frames are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a prokaryotic DNA sequence, where only one of the six possible reading frames ...
s) including a TGB (
Triple Gene Block Triple is used in several contexts to mean "threefold" or a " treble": Sports * Triple (baseball), a three-base hit * A basketball three-point field goal * A figure skating jump with three rotations * In bowling terms, three strikes in a row * I ...
). The viruses are transmitted by insects.


Taxonomy

The genus was first proposed in the first report of the ICTV in 1971, as the 'Carnation latent virus group' but was renamed in 1975 as the 'Carlavirus group', and as the genus ''Carlavirus'' in 1995 (6th report). In 2005 (8th report) it was placed in the ''
Flexiviridae ''Flexiviridae'' was a family of viruses named after being filamentous and highly flexible. Members of the family infect plants. In 2009, the family was dissolved and replaced with four families, each of which still contain the name ''flexiviridae ...
'' family, having previously been unassigned. The current position in the 9th report (2009) as a genus of the family ''Betaflexiviridae'' derives from the subsequent subdivision of ''Flexiviridae''.ICTV
CTV Taxonomy history: ''Carlavirus''
/ref> The following species are assigned to the genus, listed by scientific name and followed by the exemplar virus of the species: * ''Carlavirus alphacapsici'', Pepper virus A * ''Carlavirus alphacliviae'', Clivia carlavirus A * ''Carlavirus alphaconiti'', Aconite virus A * ''Carlavirus alphaligustri'', Ligustrum virus A * ''Carlavirus alpharosae'', Rose virus A * ''Carlavirus americanense'', American hop latent virus * ''Carlavirus atractylodis'', Atractylodes mottle virus * ''Carlavirus betachrysanthemi'', Chrysanthemum virus B * ''Carlavirus betagapanthi'', Agapanthus carlavirus B * ''Carlavirus betaphlocis'', Phlox virus B * ''Carlavirus betarosae'', Rose virus B * ''Carlavirus betulae'', Birch carlavirus * ''Carlavirus cacti'', Cactus virus 2 * ''Carlavirus chisolani'', Potato virus H * ''Carlavirus chloroipomoeae'', Sweet potato chlorotic fleck virus * ''Carlavirus colei'', Coleus vein necrosis virus * ''Carlavirus cornutum'', Sint-Jan onion latent virus * ''Carlavirus cucumis'', Cucumber vein-clearing virus * ''Carlavirus deltasambuci'', Sambucus virus D * ''Carlavirus duocacti'', Cactus carlavirus 2 * ''Carlavirus duopseudostellariae'', Pseudostellaria heterophylla carlavirus 2 * ''Carlavirus epsilonsambuci'', Sambucus virus E * ''Carlavirus fragariae'', Strawberry pseudo mild yellow edge virus * ''Carlavirus gammasambuci'', Sambucus virus C * ''Carlavirus hellebori'', Helleborus mosaic virus * ''Carlavirus humuli'', Hop mosaic virus * ''Carlavirus hydrangeae'', Hydrangea chlorotic mottle virus * ''Carlavirus ipomoeae'', Sweet potato C6 virus * ''Carlavirus jasmini'', Jasmine virus C * ''Carlavirus latensaconiti'', Aconitum latent virus * ''Carlavirus latensallii'', Garlic common latent virus * ''Carlavirus latensascalonici'', Shallot latent virus * ''Carlavirus latensbrassicae'', Cole latent virus * ''Carlavirus latenscapparis'', Caper latent virus * ''Carlavirus latensdianthi'',
Carnation latent virus Carnation latent virus (CLV) is a plant pathogenic virus of the family ''Betaflexiviridae''. External linksICTVdB - The Universal Virus Database: Carnation latent virusYam latent virus * ''Carlavirus latensgaillardiae'', Gaillardia latent virus * ''Carlavirus latenshippeastri'', Hippeastrum latent virus * ''Carlavirus latenshumuli'', Hop latent virus * ''Carlavirus latenskalanchoe'', Kalanchoe latent virus * ''Carlavirus latensnarcissi'', Narcissus common latent virus * ''Carlavirus latensnerinis'', Nerine latent virus * ''Carlavirus latensolani'', Potato latent virus * ''Carlavirus latenspassiflorae'',
Passiflora latent virus ''Passiflora'', known also as the passion flowers or passion vines, is a genus of about 550 species of flowering plants, the type genus of the family Passifloraceae. ''Passiflora'' species are widely cultivated for their striking flowers, flav ...
* ''Carlavirus latensverbenae'', Verbena latent virus * ''Carlavirus lilii'', Lily symptomless virus * ''Carlavirus maculapapayae'', Papaya mottle-associated virus * ''Carlavirus melonis'', Melon yellowing-associated virus * ''Carlavirus miphlocis'', Phlox virus M * ''Carlavirus mirabilis'', Mirabilis jalapa mottle virus * ''Carlavirus misolani'', Potato virus M * ''Carlavirus mitipapayae'', Papaya mild mottle associated virus * ''Carlavirus necroligustri'', Ligustrum necrotic ringspot virus * ''Carlavirus necroretis'',
Helleborus net necrosis virus Commonly known as hellebores (), the Eurasian genus ''Helleborus'' consists of approximately 20 species of herbaceous or evergreen perennial flowering plants in the family Ranunculaceae, within which it gave its name to the tribe of Helleboreae ...
* ''Carlavirus oleraceae'', Cole mild mosaic virus * ''Carlavirus petasitis'', Butterbur mosaic virus * ''Carlavirus pisi'', Pea streak virus * ''Carlavirus pisolani'', Potato virus P * ''Carlavirus populi'', Poplar mosaic virus * ''Carlavirus rhochrysanthemi'', Chrysanthemum virus R * ''Carlavirus sigmadaphnis'', Daphne virus S * ''Carlavirus sigmahelenii'', Helenium virus S * ''Carlavirus sigmaphlocis'', Phlox virus S * ''Carlavirus sigmascalonici'', Shallot virus S * ''Carlavirus sigmasolani'', Potato virus S * ''Carlavirus sigmavaccinii'', Blueberry virus S * ''Carlavirus trifolii'', Red clover vein mosaic virus * ''Carlavirus tripseudostellariae'', Pseudostellaria heterophylla carlavirus 3 * ''Carlavirus unicacti'', Cactus carlavirus 1 * ''Carlavirus uniglycinis'', Soybean carlavirus 1 * ''Carlavirus unipseudostellariae'', Pseudostellaria heterophylla carlavirus 1 * ''Carlavirus unisteviae'', Stevia carlavirus 1 * ''Carlavirus vaccinii'', Blueberry scorch virus * ''Carlavirus vignae'', Cowpea mild mottle virus


Virology

The virions are non enveloped, filamentous, 610–700 nanometers (nm) and 12–15 nm in diameter. The linear 5.8–9 kilobase genome is positive sense, single-stranded RNA. The 3’ terminus is polyadenylated. In some species the 5’ end is capped. The genome encodes 3 to 6 proteins including a coat protein located at the 3' end and an
RNA-dependent RNA polymerase RNA-dependent RNA polymerase (RdRp) or RNA replicase is an enzyme that catalyzes the self-replication, replication of RNA from an RNA template. Specifically, it catalyzes synthesis of the RNA strand Complementarity (molecular biology), compleme ...
located at the 5' end of the genome.


Life cycle

Viral replication is cytoplasmic, and is lysogenic. Entry into the host cell is achieved by penetration into the host cell. Replication follows the positive stranded RNA virus replication model. Positive stranded RNA virus transcription is the method of transcription. The virus exits the host cell by tripartite non-tubule guided viral movement. Plants serve as the natural host.


Transmission

Infection is at times spread by
aphid Aphids are small sap-sucking insects in the Taxonomic rank, family Aphididae. Common names include greenfly and blackfly, although individuals within a species can vary widely in color. The group includes the fluffy white Eriosomatinae, woolly ...
s in a semi-persistent mode, that is, the vector is infective for a number of hours.(Pimentel) Some species are transmitted by ''
Bemisia tabaci The silverleaf whitefly (''Bemisia tabaci'', also informally referred to as the sweet potato whitefly) is one of several species of whitefly that are currently important agricultural pests. A review in 2011 concluded that the silverleaf whitefly ...
'' in a semi-persistent mode or through the seed.Astier S. Principles of Plant Virology p78 Most species infect only a few hosts and cause infections with few or no symptoms, for example, American hop latent virus and lily symptomless virus. Some, such as blueberry scorch virus and poplar mosaic virus, cause serious illnesses. (Foster)


References


Bibliography

*
Astier, S. ''Principles of Plant Virology''

Foster, Gary. "Carlavirus Isolation and RNA Extraction." Foster, Gary D. and Sally C. Taylorin. ''Plant Virology Protocols: From Virus Isolation to Transgenic Resistance.'' Page 145. 1998. Humana Press. Online. February 13, 2008.

Pimentel, David. ''Encyclopedia of Pest Management.''Page 407. CRC Press. 2002/ Google Books. Online February 13, 2008.
*


External links


The Taxonomicon. Online. February 28, 2008.



ICTV
{{Taxonbar, from=Q2939048 Carlaviruses Virus genera Viral plant pathogens and diseases