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Virus
A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Viruses are found in almost every ecosystem on Earth and are the most numerous type of biological entity. Since Dmitri Ivanovsky's 1892 article describing a non-bacterial pathogen infecting tobacco plants and the discovery of the tobacco mosaic virus by Martinus Beijerinck in 1898, more than 16,000 of the millions of List of virus species, virus species have been described in detail. The study of viruses is known as virology, a subspeciality of microbiology. When infected, a host cell is often forced to rapidly produce thousands of copies of the original virus. When not inside an infected cell or in the process of infecting a cell, viruses exist in the form of independent viral particles, or ''virions'', consisting of (i) genetic material, i.e., long ...
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List Of Virus Species
:''This is a list of genera of biological viruses. See also Comparison of computer viruses.'' This is an alphabetical list of genera of biological viruses. It includes all genera and subgenera of viruses listed by the International Committee on Taxonomy of Viruses (ICTV) 2022 release. *For a list of virus families and subfamilies, see List of virus families and subfamilies. *For a list of virus realms, subrealms, kingdoms, subkingdoms, phyla, subphyla, classes, subclasses, orders, and suborders, see List of higher virus taxa. A * '' Aalivirus'' * '' Aarhusvirus'' * '' Abaiavirus'' * '' Abakapovirus'' * '' Abbeymikolonvirus'' * '' Aberdnavirus'' * '' Abidjanvirus'' * '' Abouovirus'' * '' Acadevirus'' * '' Acadianvirus'' * '' Acajnonavirus'' * '' Acanvirus'' * '' Achlievirus'' * '' Acionnavirus'' * '' Acridvirus'' * '' Actinovirus'' * '' Adahivirus'' * '' Adahmuvirus'' * '' Adaiavirus'' * '' Aegirvirus'' * '' Aerosvirus'' * '' Affertcholeramvirus'' * '' Afonbuvirus'' * '' A ...
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Orthocoronavirinae
Coronaviruses are a group of related RNA viruses that cause diseases in mammals and birds. In humans and birds, they cause respiratory tract infections that can range from mild to lethal. Mild illnesses in humans include some cases of the common cold (which is also caused by other viruses, predominantly rhinoviruses), while more lethal varieties can cause SARS, MERS and COVID-19. In cows and pigs they cause diarrhea, while in mice they cause hepatitis and encephalomyelitis. Coronaviruses constitute the subfamily ''Orthocoronavirinae'', in the family '' Coronaviridae'', order '' Nidovirales'' and realm '' Riboviria''. They are enveloped viruses with a positive-sense single-stranded RNA genome and a nucleocapsid of helical symmetry. The genome size of coronaviruses ranges from approximately 26 to 32 kilobases, one of the largest among RNA viruses. They have characteristic club-shaped spikes that project from their surface, which in electron micrographs create an ima ...
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SARS-CoV-2
Severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) is a strain of coronavirus that causes COVID-19, the respiratory illness responsible for the COVID-19 pandemic. The virus previously had the Novel coronavirus, provisional name 2019 novel coronavirus (2019-nCoV), and has also been called human coronavirus 2019 (HCoV-19 or hCoV-19). First identified in the city of Wuhan, Hubei, China, the World Health Organization designated the outbreak a public health emergency of international concern from January 30, 2020, to May 5, 2023. SARS‑CoV‑2 is a positive-sense single-stranded RNA virus that is Contagious disease, contagious in humans. SARS‑CoV‑2 is a strain of the species ''Betacoronavirus pandemicum'' (SARSr-CoV), as is SARS-CoV-1, the virus that caused the 2002–2004 SARS outbreak. There are animal-borne coronavirus strains more closely related to SARS-CoV-2, the most closely known relative being the BANAL-52 bat coronavirus. SARS-CoV-2 is of Zoonosis, z ...
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Riboviria
''Riboviria'' is a Realm (virology), realm of viruses that includes all viruses that use a homologous RNA-dependent polymerase for replication. It includes RNA viruses that Genetic code, encode an RNA-dependent RNA polymerase, as well as Pararnavirae, reverse-transcribing viruses (with either RNA or DNA genomes) that encode an Reverse transcriptase, RNA-dependent DNA polymerase. RNA-dependent RNA polymerase (RdRp), also called RNA replicase, produces RNA (ribonucleic acid) from RNA. RNA-dependent DNA polymerase (RdDp), also called reverse transcriptase (RT), produces DNA (deoxyribonucleic acid) from RNA. These enzymes are essential for Viral replication, replicating the viral genome and Transcription (biology), transcribing viral genes into messenger RNA (mRNA) for Translation (biology), translation of viral proteins. ''Riboviria'' was established in 2018 to accommodate all RdRp-encoding RNA viruses and was expanded a year later to also include RdDp-encoding viruses. These two grou ...
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Virology
Virology is the Scientific method, scientific study of biological viruses. It is a subfield of microbiology that focuses on their detection, structure, classification and evolution, their methods of infection and exploitation of host (biology), host cell (biology), cells for reproduction, their interaction with host organism physiology and immunity, the diseases they cause, the techniques to isolate and culture them, and their use in research and therapy. The identification of the causative agent of tobacco mosaic disease (TMV) as a novel pathogen by Martinus Beijerinck (1898) is now acknowledged as being the history of virology, official beginning of the field of virology as a discipline distinct from bacteriology. He realized the source was neither a bacterial nor a fungal infection, but something completely different. Beijerinck used the word "virus" to describe the mysterious agent in his 'contagium vivum fluidum' ('contagious living fluid'). Rosalind Franklin proposed the ...
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Duplodnaviria
''Duplodnaviria'' is a realm of viruses that includes all double-stranded DNA viruses that encode the HK97 fold major capsid protein. The HK97 fold major capsid protein (HK97 MCP) is the primary component of the viral capsid, which stores the viral deoxyribonucleic acid (DNA). Viruses in the realm also share a number of other characteristics, such as an icosahedral capsid, an opening in the capsid called a portal, a protease enzyme that empties the inside of the capsid prior to DNA packaging, and a terminase enzyme that packages viral DNA into the capsid. There are three groups of viruses in the realm: caudoviruses, herpesviruses, and the putative group mirusviruses. Caudoviruses are one of the most abundant group of viruses on Earth and are ubiquitous worldwide. They infect prokaryotes and are a major cause of death in them, which contributes to the recycling of organic material in a process called viral shunt. Caudoviruses have been used as model organisms to study ...
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Monodnaviria
''Monodnaviria'' is a Realm (virology), realm of viruses that includes all DNA virus#Group II: ssDNA viruses, single-stranded DNA viruses that Genetic code, encode an HUH-tag, endonuclease of the HUH superfamily that initiates rolling circle replication (RCR) of the circular viral genome. Viruses descended from such viruses are also included in the realm, including certain linear single-stranded DNA (ssDNA) viruses and circular double-stranded DNA (dsDNA) viruses. These atypical members typically replicate through means other than rolling circle replication. ''Monodnaviria'' was established in 2019 and contains four kingdoms: ''Loebvirae'', ''Sangervirae'', ''Trapavirae'', and ''Shotokuvirae''. Viruses in the first three kingdoms infect prokaryotes, and viruses in ''Shotokuvirae'' infect eukaryotes and include the atypical members of the realm. Viruses in ''Monodnaviria'' appear to have come into existence independently multiple times from circular bacterial and archaeal plasmids t ...
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Realm (virology)
In virology, realm is the highest taxonomic rank established for viruses by the International Committee on Taxonomy of Viruses (ICTV), which oversees virus taxonomy. Six virus realms are recognized and united by specific Conserved sequence, highly conserved traits: * ''Adnaviria'', which contains archaeal filamentous viruses with A-form double-stranded (ds) DNA genomes encoding a unique alpha-helical major capsid protein; * ''Duplodnaviria'', which contains all dsDNA viruses that encode the HK97-fold major capsid protein; * ''Monodnaviria'', which contains all single-stranded DNA (ssDNA) viruses that encode a HUH-tag, HUH superfamily endonuclease and their descendants; * ''Riboviria'', which contains all RNA viruses that encode RNA-dependent RNA polymerase and all viruses that encode reverse transcriptase; * ''Ribozyviria'', which contains hepatitis delta-like viruses with circular, negative-sense ssRNA genomes; * and ''Varidnaviria'', which contains all dsDNA viruses that en ...
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Varidnaviria
''Varidnaviria'' is a realm of viruses that includes all DNA viruses that encode major capsid proteins that contain two vertical jelly roll folds. The major capsid proteins (MCP) form into pseudohexameric subunits of the viral capsid, which stores the viral deoxyribonucleic acid (DNA). The jelly roll folds are vertical, or perpendicular, to the surface of the capsid. Apart from the double jelly roll fold MCP (DJR-MCP), most viruses in the realm share many other characteristics, such as minor capsid proteins (mCP) that has one vertical jelly roll fold, an ATPase that packages viral DNA into the capsid, a DNA polymerase that replicates the viral genome, and capsids that are icosahedral in shape. ''Varidnaviria'' was established in 2019 based on the shared characteristics of the viruses in the realm. There are two kingdoms in the realm: ''Abadenavirae'', which contains all prokaryotic DJR-MCP viruses except tectiviruses, and ''Bamfordvirae'' which contains tectiviruses and al ...
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Singelaviria
''Singelaviria'' is a realm of viruses that includes all DNA viruses that encode major capsid proteins that contain a single vertical jelly roll fold. All viruses in ''Singelaviria'' have two major capsid proteins (MCPs) that both have a single jelly roll (SJR) fold. The MCPs form into pseudohexameric subunits of the viral capsid, which stores the viral deoxyribonucleic acid (DNA), and are vertical, or perpendicular, to the surface of the capsid. Apart from the SJR fold MCP (SJR-MCP), viruses in the realm also share a minor capsid protein (mCP) that also has a vertical SJR, an ATPase that packages viral DNA into the capsid, capsids that are icosahedral in shape, and a lipid membrane inside the capsid that surrounds the viral genome. Viruses in ''Singelaviria'' infect archaea that inhabit highly saline environments and bacteria that inhabit high-temperature environments. Their genomes consist of double-stranded DNA that is either linear or circular in shape. Some viruses in t ...
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Tobacco Mosaic Virus
Tobacco mosaic virus (TMV) is a positive-sense single-stranded RNA virus species in the genus '' Tobamovirus'' that infects a wide range of plants, especially tobacco and other members of the family Solanaceae. The infection causes characteristic patterns, such as "mosaic"-like mottling and discoloration on the leaves (hence the name). TMV was the first virus to be discovered. Although it was known from the late 19th century that a non-bacterial infectious disease was damaging tobacco crops, it was not until 1930 that the infectious agent was determined to be a virus. It is the first pathogen identified as a virus. The virus was crystallised by Wendell Meredith Stanley. It has a similar size to the largest synthetic molecule, known as PG5 with comparable length and diameter. History In 1886, Adolf Mayer first described the tobacco mosaic disease that could be transferred between plants, similar to bacterial infections. In 1892, Dmitri Ivanovsky gave the first concrete e ...
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Capsid
A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may not correspond to individual proteins, are called capsomeres. The proteins making up the capsid are called capsid proteins or viral coat proteins (VCP). The virus genomic component inside the capsid, along with occasionally present virus core protein, is called the virus core. The capsid and core together are referred to as a nucleocapsid (cf. also virion). Capsids are broadly classified according to their structure. The majority of the viruses have capsids with either helical or icosahedral structure. Some viruses, such as bacteriophages, have developed more complicated structures due to constraints of elasticity and electrostatics. The icosahedral shape, which has 20 equilateral triangular faces, approximates a sphere, while th ...
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