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Petuvirus
''Petuvirus'' is a genus of viruses, in the family ''Caulimoviridae'' order ''Ortervirales''. Plants serve as natural hosts. There is only one species in this genus: ''Petunia vein clearing virus''. Diseases associated with this genus include: plants: chlorotic vein clearing, leaf malformation. Structure Viruses in Petuvirus are non-enveloped, with icosahedral geometries, and T=7 symmetry. The diameter is around 45-50 nm. Genomes are circular and non-segmented. Its genome is 7200 nucleotides long and has a guanine + cytosine content of 38.2%. There are terminally redundant sequences on the genome which have direct terminal repeats that are reiterated internally in inverted form. The virus codes for 2 ORFs. Its capsid shells are multilayered. The capsid is round to elongate with icosahedral symmetry and the virus is composed of 16% nucleic acid. ''Petuviruses'' have a buoyant density in CsCl of 1.31 g cm-3 and there are 1 sedimenting component(s) found in purified preparati ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Caulimoviridae
''Caulimoviridae'' is a family of viruses infecting plants. There are 94 species in this family, assigned to 11 genera. Viruses belonging to the family ''Caulimoviridae'' are termed double-stranded DNA (dsDNA) reverse-transcribing viruses (or pararetroviruses) i.e. viruses that contain a reverse transcription stage in their replication cycle. This family contains all plant viruses with a dsDNA genome that have a reverse transcribing phase in their lifecycle. Taxonomy The following genera are recognized: *'' Badnavirus'' *'' Caulimovirus'' *'' Cavemovirus'' *'' Dioscovirus'' *''Petuvirus'' *'' Rosadnavirus'' *'' Ruflodivirus'' *''Solendovirus'' *''Soymovirus'' *'' Tungrovirus'' *'' Vaccinivirus'' Virus particle structure All viruses of this family are non-enveloped. Virus particles are either bacilliform or isometric. The type of nucleocapsid incorporated into the virus structure determines the size of the viral particles. Bacilliform particles are approximately 35–50 nm ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Viruses
A virus is a submicroscopic infectious agent that replicates only inside the living cells Cell most often refers to: * Cell (biology), the functional basic unit of life Cell may also refer to: Locations * Monastic cell, a small room, hut, or cave in which a religious recluse lives, alternatively the small precursor of a monastery w ... of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Since Dmitri Ivanovsky's 1892 article describing a non-bacterial pathogen infecting tobacco plants and the discovery of the tobacco mosaic virus by Martinus Beijerinck in 1898,Dimmock p. 4 more than 9,000 virus species have been described in detail of the millions of types of viruses in the environment. Viruses are found in almost every ecosystem on Earth and are the most numerous type of biological entity. The study of viruses is known as virology, a subspeciality of microbiology. When infected, a host cell is ofte ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Ortervirales
''Ortervirales'' is an order that contains all accepted species of single-stranded RNA viruses that replicate through a DNA intermediate (Group VI) and all accepted species of double-stranded DNA viruses (except ''Hepadnaviridae'') that replicate through an RNA intermediate (Group VII). The name is derived from the reverse of retro. All reverse-transcribing viruses possess significant similarities to each other. Their reverse transcriptase proteins share a common origin. Moreover, belpaoviruses, metaviruses, pseudoviruses, and retroviruses have other features in common. Their polymerase proteins are similar in structure and include aspartic protease (retroviral aspartyl protease) and an integrase belonging to the DDE recombinase superfamily (see Recombination-activating gene tructure. They also share similar capsid and nucleocapsid proteins/domains. Caulimoviruses also share some features with belpaoviruses, metaviruses, pseudoviruses, and retroviruses such as a homologous as ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Nucleotides
Nucleotides are organic molecules consisting of a nucleoside and a phosphate. They serve as monomeric units of the nucleic acid polymers – deoxyribonucleic acid (DNA) and ribonucleic acid (RNA), both of which are essential biomolecules within all life-forms on Earth. Nucleotides are obtained in the diet and are also synthesized from common nutrients by the liver. Nucleotides are composed of three subunit molecules: a nucleobase, a five-carbon sugar ( ribose or deoxyribose), and a phosphate group consisting of one to three phosphates. The four nucleobases in DNA are guanine, adenine, cytosine and thymine; in RNA, uracil is used in place of thymine. Nucleotides also play a central role in metabolism at a fundamental, cellular level. They provide chemical energy—in the form of the nucleoside triphosphates, adenosine triphosphate (ATP), guanosine triphosphate (GTP), cytidine triphosphate (CTP) and uridine triphosphate (UTP)—throughout the cell for the many cellular fun ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Guanine
Guanine () (symbol G or Gua) is one of the four main nucleobases found in the nucleic acids DNA and RNA, the others being adenine, cytosine, and thymine ( uracil in RNA). In DNA, guanine is paired with cytosine. The guanine nucleoside is called guanosine. With the formula C5H5N5O, guanine is a derivative of purine, consisting of a fused pyrimidine- imidazole ring system with conjugated double bonds. This unsaturated arrangement means the bicyclic molecule is planar. Properties Guanine, along with adenine and cytosine, is present in both DNA and RNA, whereas thymine is usually seen only in DNA, and uracil only in RNA. Guanine has two tautomeric forms, the major keto form (see figures) and rare enol form. It binds to cytosine through three hydrogen bonds. In cytosine, the amino group acts as the hydrogen bond donor and the C-2 carbonyl and the N-3 amine as the hydrogen-bond acceptors. Guanine has the C-6 carbonyl group that acts as the hydrogen bond acceptor, while a ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Cytosine
Cytosine () (symbol C or Cyt) is one of the four nucleobases found in DNA and RNA, along with adenine, guanine, and thymine ( uracil in RNA). It is a pyrimidine derivative, with a heterocyclic aromatic ring and two substituents attached (an amine group at position 4 and a keto group at position 2). The nucleoside of cytosine is cytidine. In Watson-Crick base pairing, it forms three hydrogen bonds with guanine. History Cytosine was discovered and named by Albrecht Kossel and Albert Neumann in 1894 when it was hydrolyzed from calf thymus tissues. A structure was proposed in 1903, and was synthesized (and thus confirmed) in the laboratory in the same year. In 1998, cytosine was used in an early demonstration of quantum information processing when Oxford University researchers implemented the Deutsch-Jozsa algorithm on a two qubit nuclear magnetic resonance quantum computer (NMRQC). In March 2015, NASA scientists reported the formation of cytosine, along with ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Terminal Repeat
A long terminal repeat (LTR) is a pair of identical sequences of DNA, several hundred Base pair, base pairs long, which occur in Eukaryote, eukaryotic Genome, genomes on either end of a series of Gene, genes or Pseudogene, pseudogenes that form a retrotransposon or an endogenous retrovirus or a Retrovirus, retroviral provirus. All retroviral genomes are flanked by LTRs, while there are some retrotransposons without LTRs. Typically, an element flanked by a pair of LTRs will encode a reverse transcriptase and an integrase, allowing the element to be copied and inserted at a different location of the genome. Copies of such an LTR-flanked element can often be found hundreds or thousands of times in a genome. LTR retrotransposon, LTR retrotransposons comprise about 8% of the human genome. The first LTR sequences were found by A.P. Czernilofsky and John Shine, J. Shine in 1977 and 1980. Transcription The LTR-flanked sequences are partially Transcription (genetics), transcribed into an R ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Open Reading Frame
In molecular biology, open reading frames (ORFs) are defined as spans of DNA sequence between the start and stop codons. Usually, this is considered within a studied region of a Prokaryote, prokaryotic DNA sequence, where only one of the #Six-frame translation, six possible reading frames will be "open" (the "reading", however, refers to the RNA produced by Transcription (biology), transcription of the DNA and its subsequent interaction with the ribosome in Translation (biology), translation). Such an ORF may contain a start codon (usually AUG in terms of RNA) and by definition cannot extend beyond a stop codon (usually UAA, UAG or UGA in RNA). That start codon (not necessarily the first) indicates where translation may start. The transcription terminator, transcription termination site is located after the ORF, beyond the Translation (biology), translation stop codon. If transcription were to cease before the stop codon, an incomplete protein would be made during translation. In ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Capsid
A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or may not correspond to individual proteins, are called capsomeres. The proteins making up the capsid are called capsid proteins or viral coat proteins (VCP). The capsid and inner genome is called the nucleocapsid. Capsids are broadly classified according to their structure. The majority of the viruses have capsids with either Helix, helical or icosahedral structure. Some viruses, such as bacteriophages, have developed more complicated structures due to constraints of elasticity and electrostatics. The icosahedral shape, which has 20 equilateral triangular faces, approximates a sphere, while the helical shape resembles the shape of a Spring (device), spring, taking the space of a cylinder but not being a cylinder itself. The capsid faces may ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Icosahedral
In geometry, an icosahedron ( or ) is a polyhedron with 20 faces. The name comes and . The plural can be either "icosahedra" () or "icosahedrons". There are infinitely many non- similar shapes of icosahedra, some of them being more symmetrical than others. The best known is the (convex, non-stellated) regular icosahedron—one of the Platonic solids—whose faces are 20 equilateral triangles. Regular icosahedra There are two objects, one convex and one nonconvex, that can both be called regular icosahedra. Each has 30 edges and 20 equilateral triangle faces with five meeting at each of its twelve vertices. Both have icosahedral symmetry. The term "regular icosahedron" generally refers to the convex variety, while the nonconvex form is called a ''great icosahedron''. Convex regular icosahedron The convex regular icosahedron is usually referred to simply as the ''regular icosahedron'', one of the five regular Platonic solids, and is represented by its Schläfli symbol , cont ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Density
Density (volumetric mass density or specific mass) is the substance's mass per unit of volume. The symbol most often used for density is ''ρ'' (the lower case Greek letter rho), although the Latin letter ''D'' can also be used. Mathematically, density is defined as mass divided by volume: : \rho = \frac where ''ρ'' is the density, ''m'' is the mass, and ''V'' is the volume. In some cases (for instance, in the United States oil and gas industry), density is loosely defined as its weight per unit volume, although this is scientifically inaccurate – this quantity is more specifically called specific weight. For a pure substance the density has the same numerical value as its mass concentration. Different materials usually have different densities, and density may be relevant to buoyancy, purity and packaging. Osmium and iridium are the densest known elements at standard conditions for temperature and pressure. To simplify comparisons of density across different syst ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Sedimentation
Sedimentation is the deposition of sediments. It takes place when particles in suspension settle out of the fluid in which they are entrained and come to rest against a barrier. This is due to their motion through the fluid in response to the forces acting on them: these forces can be due to gravity, centrifugal acceleration, or electromagnetism. Settling is the falling of suspended particles through the liquid, whereas sedimentation is the final result of the settling process. In geology, sedimentation is the deposition of sediments which results in the formation of sedimentary rock. The term is broadly applied to the entire range of processes that result in the formation of sedimentary rock, from initial erosion through sediment transport and settling to the lithification of the sediments. However, the strict geological definition of sedimentation is the mechanical deposition of sediment particles from an initial suspension in air or water. Sedimentation may pertai ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
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