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Desulfitobacterium
''Desulfitobacterium'' is a genus of Gram-positive, strictly anaerobic, rod-shaped, spore-forming bacteria from the family of Peptococcaceae. ''Desulfitobacterium'' species have low GC-contents. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) See also * List of bacterial orders * List of bacteria genera This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are ... References Further reading * * * * * * Peptococcaceae Bacteria genera {{Firmicutes-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Desulfitobacterium Hafniense
''Desulfitobacterium hafniense'' is a species of gram positive bacteria, its type strain is DCB-2T. ( NCBI taxonomy ID 272564; DSM 10664). ''D. hafniense'' are anaerobic spore-forming bacteria. The majority of the described isolates are facultatively organohalide respiring bacteria capable of reductive dechlorination of organohalides such as chlorophenols, and tetrachloroethene. The cells of ''D. hafniense'' are rod-shaped and 3.3 to 6 μm long by 0.6 to 0.7 μm wide, they are motile, each cell having one or two terminal flagella. All tested strains are resistant to the antibiotic vancomycin. Over the years several additional strains belonging to the ''hafniense'' species has been described from a diverse range of environments. Strains PCP-1, TCE1, DP7, TCP-A and G2 were originally published as members of a separate species ''Frappieri,'' but all are today considered as belonging to the ''hafniense'' species. Genomes The genome of D. hafniense contains the machinery for ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Desulfitobacterium Dichloroeliminans
''Desulfitobacterium'' is a genus of Gram-positive, strictly anaerobic, rod-shaped, spore-forming bacteria from the family of Peptococcaceae. ''Desulfitobacterium'' species have low GC-contents. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) See also * List of bacterial orders * List of bacteria genera This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are ... References Further reading * * * * * * Peptococcaceae Bacteria genera {{Firmicutes-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Desulfitobacterium Dehalogenans
''Desulfitobacterium dehalogenans'' is a species of bacteria. They are facultative organohalide respiring bacteria capable of reductively dechlorinating chlorophenolic compounds and tetrachloroethene. They are anaerobic, motile, Gram-positive and rod-shaped bacteria capable of utilizing a wide range of electron donors and acceptors. The type strain JW/IU-DCT, DSM 9161, NCBi taxonomy ID 756499. There are two described isolates from this species strains JW/IU-DCT and PCE1. The genomes of both strains have been sequenced, none of the strains encodes any plasmids, in addition to six reductive dehalogenases Reductive dehaholagenses ( EC 1.97.1.8) are a group of enzymes utilized in organohalide respiring bacteria. These enzymes are mostly attached to the periplasmic side of the cytoplasmic membrane and play a central role in energy-conserving respirat ..., the genomes encodes a large number of genes for utilization of a range of electron donors and acceptors. References F ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Desulfitobacterium Chlororespirans
''Desulfitobacterium chlororespirans'' is a Gram-positive, anaerobic, spore-forming species of bacteria. Its type strain is Co23 (= ATCC 700175 = DSM 11544). It grows by coupling the oxidation of lactate to the reductive dechlorination of 3-chloro-4-hydroxybenzoate Hydroxybenzoic acid may refer to several related chemical compounds: * 2-Hydroxybenzoic acid (salicylic acid, ''o''-hydroxybenzoic acid) * 3-Hydroxybenzoic acid (''m''-hydroxybenzoic acid) * 4-Hydroxybenzoic acid (''p''-hydroxybenzoic acid) See .... References Further reading * * *Loffler, Frank E., Robert A. Sanford, and James M. Tiedje. "Initial Characterization of a Reductive Dehalogenase from Desulfitobacterium chlororespirans Co23." Applied and Environmental Microbiology 62.10 (1996): 3809–3813. External links LPSN*Type strain of ''Desulfitobacterium chlororespirans'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Peptococcaceae Bacteria described in 2001 {{Clostridia-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Desulfitobacterium Metallireducens
''Desulfitobacterium metallireducens'' is an anaerobic bacterium that couples growth to the reduction of metals and humic acid Humic substances (HS) are organic compounds that are important components of humus, the major organic fraction of soil, peat, and coal (and also a constituent of many upland streams, dystrophic lakes, and ocean water). For a long era in the 1 ...s as well as chlorinated compounds. Its type strain is 853-15A(T) (= ATCC BAA-636(T)). It was first isolated from a uranium-contaminated aquifer sediment. References Further reading * *Dworkin, Martin, and Stanley Falkow, eds. The Prokaryotes: Vol. 4: Bacteria: Firmicutes, Cyanobacteria. Vol. 4. Springer, 2006. * External links LPSN*Type strain of ''Desulfitobacterium metallireducens'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Peptococcaceae Bacteria described in 2002 {{Clostridia-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
List Of Bacteria Genera
This article lists the genera of the bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). However many taxonomic names are taken from the GTDB release 07-RS207 (8th April 2022). Phyla {, border="0" style="width: 100%;" ! , - , style="border:0px" valign="top", {, class="wikitable sortable" style="width: 100%; font-size: 95%;" !Syperphylum !Phylum !Authority !Synonyms , - , Parakaryota , , , Myojin parakaryote , - , , " Canglongiota" , Zhang et al. 2022 , , - , , " Fervidibacteria" , , OctSpa1-106 , - , , " Heilongiota" , Zhang et al. 2022 , , - , , " Qinglongiota" , Zhang et al. 2022 , , - , , " Salinosulfoleibacteria" , Tazi et al. 2006 , , - , , " Teskebacteria" , Dojka 1998 , WS1 , - , , " Tharpellota" , Speth et al. 2022 , , - , Terrabacteria , Chloroflexota , Whitman et al. 2018 , " Thermomicrobiota" , - , Terrabacteria , " Dormibacter ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Peptococcaceae
The Peptococcaceae are a family of bacteria in the order Clostridiales The Eubacteriales are an order of bacteria placed within the class Clostridia. Families Eubacteriales comprises the following families: * " Betainaceae" Jones et al. 2019 * " Bianqueaceae" Liu et al. 2021 * " Borkfalkiaceae" Hildebrand, Pallen .... References External links Bacteria families {{Clostridia-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic re ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
List Of Bacterial Orders
This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) and the phylogeny is based on 16S rRNA-based LTP release 132 by The All-Species Living Tree Project. Phylogeny National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups. Cladogram was taken from GTDB release 07-RS207 (8th April 2022). Clade Terrabacteria Phylum Chloroflexota * Class ?"Bathosphaeria" Mehrshad ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to breaking up paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, creating new names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as human adjustments to the taxonomy. An open-source Open source is source code that is made freely available for possible modification and redistribution. Products include permission to use the source code, design documents, or content of the product. The open-source model is a decentralized sof ... tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB Project, ARB, SILVA rRNA database project, and List of Prokaryotic names with Standing in Nomenclature, LPSN, with the aim of assembling a database of 16S ribosomal RNA, 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S ribosomal RNA, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBan ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
