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Cryptomonas
''Cryptomonas'' is the name-giving genus of the Cryptomonads established by German biologist Christian Gottfried Ehrenberg in 1831. The algae are common in freshwater habitats and brackish water worldwide and often form blooms in greater depths of lakes. The cells are usually brownish or greenish in color and are characteristic of having a slit-like furrow at the anterior. They are not known to produce any toxins. They are used to feed small zooplankton, which is the food source for small fish in fish farms. Many species of ''Cryptomonas'' can only be identified by DNA sequencing. ''Cryptomonas'' can be found in several marine ecosystems in Australia and South Korea. Etymology ''Cryptomonas'' has the meaning of hidden small flagellates from “crypto” and “monas”. Genome structure Species within ''Cryptomonas'' contain four genomes: the nuclear, the nucleomorph, the plastid, and mitochondrial genomes. The plastid genome contains 118 kilobase pairs and is a result of o ...
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Nucleomorph
Nucleomorphs are small, vestigial eukaryotic nuclei found between the inner and outer pairs of membranes in certain plastids. They are thought to be vestiges of red and green algal nuclei that were engulfed by a larger eukaryote. Because the nucleomorph lies between two sets of membranes, nucleomorphs support the endosymbiotic theory and are evidence that the plastids containing them are complex plastids. Having two sets of membranes indicate that the plastid, a prokaryote, was engulfed by a eukaryote, an alga, which was then engulfed by another eukaryote, the host cell, making the plastid an example of secondary endosymbiosis. Organisms with known nucleomorphs As of 2007, only two monophyletic groups of organisms are known to contain plastids with a vestigial nucleus or nucleomorph: the cryptomonads of the supergroup Cryptista and the chlorarachniophytes of the supergroup Rhizaria, both of which have examples of sequenced nucleomorph genomes. Studies of the genomic organiza ...
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Cryptochrysis
Cryptochrysis is a formerly recognized genus of cryptomonads first proposed by Adolf Pascher in 1911. He initially treated it as the sole genus in family ''Cryptochrysidaceae'', but later treated it as a member of the ''Cryptochrysideae'' subfamily of Cryptomonadaceae, along with Rhodomonas, Chroomonas, and Cyanomonas. In 1967, R.W. Butcher relegated the group to a subgenus within Chroomonas. It is now regarded as paraphyletic, with its species now various reassigned into ''Pyrenomonas'', ''Rhinomonas'' and ''Cryptomonas''. Species * '' Cryptochrysis amoeboidea'' Pascher 1917 * '' Cryptochrysis atlantica'' Lackey 1940 * '' Cryptochrysis carinata'' Czosnowski 1948 * ''Cryptochrysis commutata'' Pascher 1911 : '' Cryptomonas commutata'' * ''Chroomonas (Cryptochrysis) fragarioides'' : ''Rhinomonas fragarioides'' * ''Cryptochrysis fulva'' Butcher 1952 : ''Rhinomonas fulva'' * '' Cryptochrysis gigas'' Pascher 1917 * ''Cryptochrysis lateralis'' Butcher 1952 : ''Rhinomonas latera ...
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Chroomonas
''Chroomonas'' is a genus of cryptophytes first described by Anton Hansgirg. It includes the species A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), ... '' Chroomonas elegans'', '' Chroomonas placoidea'', '' Chroomonas baltica'', '' Chroomonas guttula'' and '' Chroomonas vectensis''. References Cryptista genera {{Cryptomonad-stub ...
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Proteomonas
Geminigeraceae is a family of cryptophytes containing the five genera '' Geminigera'', '' Guillardia'', ''Hanusia'', ''Proteomonas'' and ''Teleaulax''. They are characterised by chloroplasts containing Cr-phycoerythrin 545, and an inner periplast component (IPC) comprising "a sheet or a sheet and multiple plates if diplomorphic". The nucleomorphs are never in the pyrenoid Pyrenoids are sub-cellular phase-separated micro-compartments found in chloroplasts of many algae,Giordano, M., Beardall, J., & Raven, J. A. (2005). CO2 concentrating mechanisms in algae: mechanisms, environmental modulation, and evolution. ''An ..., and there is never a scalariform furrow. The cells do, however, have a long, keeled rhizostyle with lamellae (wings). References Cryptomonads Cryptista families Algae families {{Cryptomonad-stub ...
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Thylakoid
Thylakoids are membrane-bound compartments inside chloroplasts and cyanobacterium, cyanobacteria. They are the site of the light-dependent reactions of photosynthesis. Thylakoids consist of a #Membrane, thylakoid membrane surrounding a #Lumen, thylakoid lumen. Chloroplast thylakoids frequently form stacks of disks referred to as #Granum and stroma lamellae, grana (singular: ''granum''). Grana are connected by intergranal or Stroma (fluid), stromal thylakoids, which join granum stacks together as a single functional compartment. In thylakoid membranes, chlorophyll pigments are found in packets called quantasomes. Each quantasome contains 230 to 250 chlorophyll molecules. Etymology The word ''Thylakoid'' comes from the Greek language, Greek word ''thylakos'' or ''θύλακος'', meaning "sac" or "pouch". Thus, ''thylakoid'' means "sac-like" or "pouch-like". Structure Thylakoids are membrane-bound structures embedded in the chloroplast stroma (fluid), stroma. A stack of thy ...
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Phycobiliprotein
Phycobiliproteins are water-soluble proteins present in cyanobacteria and certain algae (rhodophytes, cryptomonads, glaucocystophytes). They capture light energy, which is then passed on to chlorophylls during photosynthesis. Phycobiliproteins are formed of a complex between proteins and covalently bound phycobilins that act as chromophores (the light-capturing part). They are most important constituents of the phycobilisomes. Major phycobiliproteins Characteristics Phycobiliproteins demonstrate superior fluorescent properties compared to small organic fluorophores, especially when high sensitivity or multicolor detection required : * Broad and high absorption of light suits many light sources * Very intense emission of light: 10-20 times brighter than small organic fluorophores * Relative large Stokes shift gives low background, and allows multicolor detections. * Excitation and emission spectra do not overlap compared to conventional organic dyes. * Can be used in tandem (si ...
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Chromophore
A chromophore is the part of a molecule responsible for its color. The word is derived . The color that is seen by our eyes is that of the light not Absorption (electromagnetic radiation), absorbed by the reflecting object within a certain wavelength spectrum of visible spectrum, visible light. The chromophore is a region in the molecule where the energy difference between two separate molecular orbitals falls within the range of the visible spectrum (or in informal contexts, the spectrum under scrutiny). Visible light that hits the chromophore can thus be absorbed by exciting an electron from its ground state into an excited state. In biological molecules that serve to capture or detect light energy, the chromophore is the Moiety (chemistry), moiety that causes a conformational change in the molecule when hit by light. Conjugated pi-bond system chromophores Just like how two adjacent p-orbitals in a molecule will form a pi-bond, three or more adjacent p-orbitals in a molec ...
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Phycobilin
Phycobilins (from Greek: '' (phykos)'' meaning "alga", and from Latin: ''bilis'' meaning "bile") are light-capturing bilins found in cyanobacteria and in the chloroplasts of red algae, glaucophytes and some cryptomonads (though not in green algae and plants). Most of their molecules consist of a chromophore which makes them coloured. They are unique among the photosynthetic pigments in that they are bonded to certain water-soluble proteins, known as phycobiliproteins. Phycobiliproteins then pass the light energy to chlorophylls for photosynthesis. The phycobilins are especially efficient at absorbing red, orange, yellow, and green light (in the range 520 to 630 nm), wave lengths that are not well absorbed by chlorophyll ''a''. Organisms growing in shallow waters tend to contain phycobilins that can capture yellow/red light, while those at greater depth often contain more of the phycobilins that can capture green light, which is relatively more abundant there. The phycobili ...
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Flagella
A flagellum (; : flagella) (Latin for 'whip' or 'scourge') is a hair-like appendage that protrudes from certain plant and animal sperm cells, from fungal spores ( zoospores), and from a wide range of microorganisms to provide motility. Many protists with flagella are known as flagellates. A microorganism may have from one to many flagella. A gram-negative bacterium '' Helicobacter pylori'', for example, uses its flagella to propel itself through the stomach to reach the mucous lining where it may colonise the epithelium and potentially cause gastritis, and ulcers – a risk factor for stomach cancer. In some swarming bacteria, the flagellum can also function as a sensory organelle, being sensitive to wetness outside the cell. Across the three domains of Bacteria, Archaea, and Eukaryota, the flagellum has a different structure, protein composition, and mechanism of propulsion but shares the same function of providing motility. The Latin word means " whip" to describe its ...
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Phycoerythrobilin
Phycoerythrobilin is a red phycobilin, i.e. an open tetrapyrrole chromophore found in cyanobacteria and in the chloroplasts of red algae, glaucophytes and some cryptomonads. Phycoerythrobilin is present in the phycobiliprotein phycoerythrin, of which it is the terminal acceptor of energy. The amount of phycoerythrobilin in phycoerythrins varies a lot, depending on the considered organism. In some Rhodophytes and oceanic cyanobacteria, phycoerythrobilin is also present in the phycocyanin Phycocyanin is a pigment-protein complex from the light-harvesting phycobiliprotein family, along with allophycocyanin and phycoerythrin. It is an accessory pigment to chlorophyll. All phycobiliproteins are water-soluble, so they cannot exist ..., then termed R-phycocyanin. Like all phycobilins, phycoerythrobilin is covalently linked to these phycobiliproteins by a thioether bond. References External links Chemical Structure of phycoerythrobilin Tetrapyrroles Photosynthetic pigment ...
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