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ABCD Schema
The Access to Biological Collections Data (ABCD) schema is a highly structured data exchange and access model for taxon occurrence data (specimens, observations, etc. of living organisms), i.e. primary biodiversity data. In 2006, an 'Extension For Geosciences' was added to the schema, to form the ABCDEFG Schema, and in 2010, Biodiversity Information Standards (TDWG) published a draft standard extension for DNA, called ABCDDNA. References External links *https://www.tdwg.org/standards/abcd/ *http://www.codata.org/ *https://web.archive.org/web/20070929124618/http://www.wfcc.nig.ac.jp/NEWSLETTER/newsletter36/a6.pdf the ABCD database schema The database schema is the structure of a database described in a formal language supported typically by a relational database management system (RDBMS). The term "wikt:schema, schema" refers to the organization of data as a blueprint of how the ... Bioinformatics XML-based standards {{bioinformatics-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Exchange
Data exchange is the process of taking data structured under a ''source'' schema and transforming it into a ''target'' schema, so that the target data is an accurate representation of the source data. Data exchange allows data to be shared between different computer programs. It is similar to the related concept of data integration except that data is actually restructured (with possible loss of content) in data exchange. There may be no way to transform an instance given all of the constraints. Conversely, there may be numerous ways to transform the instance (possibly infinitely many), in which case a "best" choice of solutions has to be identified and justified. Single-domain In some domains, a few dozen different source and target schema (proprietary data formats) may exist. An "exchange" or "interchange format" is often developed for a single domain, and then necessary routines (mappings) are written to (indirectly) transform/translate each and every source schema to each an ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Access
Data access is a generic term referring to a process which has both an IT-specific meaning and other connotations involving access rights in a broader legal and/or political sense. In the former it typically refers to software and activities related to storing, retrieving, or acting on data housed in a database or other information repository, repository. Details Two fundamental types of data access exist: # sequential access (as in magnetic tape data storage, magnetic tape, for example) # random access (as in indexed digital media, media) Data access crucially involves authorization to access different data repositories. Data access can help distinguish the abilities of administrators and users. For example, administrators may have the ability to remove, edit and add data, while general users may not even have "read" rights if they lack access to particular information. Historically, each repository (including each different database, file system, etc.), might require the use of ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Data Model
A data model is an abstract model that organizes elements of data and standardizes how they relate to one another and to the properties of real-world entities. For instance, a data model may specify that the data element representing a car be composed of a number of other elements which, in turn, represent the color and size of the car and define its owner. The corresponding professional activity is called generally ''data modeling'' or, more specifically, '' database design''. Data models are typically specified by a data expert, data specialist, data scientist, data librarian, or a data scholar. A data modeling language and notation are often represented in graphical form as diagrams. Michael R. McCaleb (1999)"A Conceptual Data Model of Datum Systems". National Institute of Standards and Technology. August 1999. A data model can sometimes be referred to as a data structure, especially in the context of programming languages. Data models are often complemented by function ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Taxon
In biology, a taxon (back-formation from ''taxonomy''; : taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular name and given a particular ranking, especially if and when it is accepted or becomes established. It is very common, however, for taxonomists to remain at odds over what belongs to a taxon and the criteria used for inclusion, especially in the context of rank-based (" Linnaean") nomenclature (much less so under phylogenetic nomenclature). If a taxon is given a formal scientific name, its use is then governed by one of the nomenclature codes specifying which scientific name is correct for a particular grouping. Initial attempts at classifying and ordering organisms (plants and animals) were presumably set forth in prehistoric times by hunter-gatherers, as suggested by the fairly sophisticated folk taxonomies. Much later, Aristotle, and later st ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Biodiversity
Biodiversity is the variability of life, life on Earth. It can be measured on various levels. There is for example genetic variability, species diversity, ecosystem diversity and Phylogenetics, phylogenetic diversity. Diversity is not distributed evenly on Earth. It is greater in the tropics as a result of the warm climate and high primary productivity in the region near the equator. Tropical forest ecosystems cover less than one-fifth of Earth's terrestrial area and contain about 50% of the world's species. There are latitudinal gradients in species diversity for both marine and terrestrial taxa. Since Abiogenesis, life began on Earth, six major mass extinctions and several minor events have led to large and sudden drops in biodiversity. The Phanerozoic aeon (the last 540 million years) marked a rapid growth in biodiversity via the Cambrian explosion. In this period, the majority of Multicellular organism, multicellular Phylum, phyla first appeared. The next 400 mil ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
XML Schema
An XML schema is a description of a type of XML document, typically expressed in terms of constraints on the structure and content of documents of that type, above and beyond the basic syntactical constraints imposed by XML itself. These constraints are generally expressed using some combination of grammatical rules governing the order of elements, Boolean predicates that the content must satisfy, data types governing the content of elements and attributes, and more specialized rules such as uniqueness and referential integrity constraints. There are languages developed specifically to express XML schemas. The document type definition (DTD) language, which is native to the XML specification, is a schema language that is of relatively limited capability, but that also has other uses in XML aside from the expression of schemas. Two more expressive XML schema languages in widespread use are XML Schema (with a capital ''S'') and RELAX NG. The mechanism for associating an XML do ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Biodiversity Information Standards (TDWG)
Biodiversity Information Standards (TDWG), originally called the Taxonomic Databases Working Group, is a non-profit scientific and educational association that works to develop open standards for the exchange of biodiversity data, facilitating biodiversity informatics. It is affiliated with the International Union of Biological Sciences. It is best known for the Darwin Core standard for exchanging biodiversity, which has been used by the Global Biodiversity Information Facility to collect millions of biological observations from museums and other organizations from around the world. History TDWG was founded in 1985 as the Taxonomic Databases Working Group; the first meeting took place on September 28–30, 1985, at the Conservatory and Botanical Garden of the City of Geneva in Switzerland. The organisation was formed as an international collaboration to promote the wider and more effective dissemination of information about biological organisms. Its name was changed to Taxonomic Da ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Database Schema
The database schema is the structure of a database described in a formal language supported typically by a relational database management system (RDBMS). The term "wikt:schema, schema" refers to the organization of data as a blueprint of how the database is constructed (divided into database tables in the case of relational databases). The formal definition of a database schema is a set of formulas (sentences) called integrity constraints imposed on a database. These integrity constraints ensure compatibility between parts of the schema. All constraints are expressible in the same language. A database can be considered a structure in realization of the database language. The states of a created conceptual schema are transformed into an explicit mapping, the database schema. This describes how real-world entities are Data modeling, modeled in the database. "A database schema specifies, based on the database administrator's knowledge of possible applications, the facts that can ent ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bioinformatics
Bioinformatics () is an interdisciplinary field of science that develops methods and Bioinformatics software, software tools for understanding biological data, especially when the data sets are large and complex. Bioinformatics uses biology, chemistry, physics, computer science, data science, computer programming, information engineering, mathematics and statistics to analyze and interpret biological data. The process of analyzing and interpreting data can sometimes be referred to as computational biology, however this distinction between the two terms is often disputed. To some, the term ''computational biology'' refers to building and using models of biological systems. Computational, statistical, and computer programming techniques have been used for In silico, computer simulation analyses of biological queries. They include reused specific analysis "pipelines", particularly in the field of genomics, such as by the identification of genes and single nucleotide polymorphis ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
