Cupriavidus Necator

''Cupriavidus necator'' is a Gram-negative soil bacterium of the class Betaproteobacteria.

Taxonomy

''Cupriavidus necator'' has gone through a series of name changes. In the first half of the 20th century, many micro-organisms were isolated for their ability to use hydrogen. Hydrogen-metabolizing chemolithotrophic organisms were clustered into the group ''Hydrogenomonas''. ''C. necator'' was originally named ''Hydrogenomonas eutrophus'' because it fell under the ''Hydrogenomonas'' classification and was "well nourished and robust". Some of the original ''H. eutrophus'' cultures isolated were by Bovell and Wilde. After characterizing cell morphology, metabolism and GC content, the ''Hydrogenomonas'' nomenclature was disbanded because it comprised many species of microorganisms. ''H. eutrophus'' was then renamed ''Alcaligenes eutropha'' because it was a micro-organism with degenerated peritrichous flagellation. Investigating phenotype, lipid composition, fatty acid composition and 16S rRNA analysis, ''A. eutropha'' was found to belong to the genus ''Ralstonia'' and named ''Ralstonia eutropha''. Upon further study of the genus, ''Ralstonia'' was found to comprise two phenotypically distinct clusters. The new genus ''Wautersia'' was created from one of these clusters which included ''R. eutropha''. In turn ''R. eutropha'' was renamed ''Wautersia eutropha''. Looking at DNA–DNA hybridization and phenotype comparison with ''Cupriavidus necator'', ''W. eutropha'' was found to be the same species as previously described ''C. necator''. Because ''C. necator'' was named in 1987 far before the name change to ''R. eutropha'' and ''W. eutropha'', the name ''C. necator'' was assigned to ''R. eutropha'' according to Rule 23a of the International Code of Nomenclature of Bacteria.

Metabolism

''Cupriavidus necator'' is a hydrogen-oxidizing bacterium ("knallgas" bacterium) capable of growing at the interface of anaerobic and aerobic environments. It can easily adapt between heterotrophic and autotrophic lifestyles. Both organic compounds and hydrogen can be used as a source of energy ''C. necator'' can perform aerobic or anaerobic respiration by denitrification of nitrate and/or nitrite to nitrogen gas. When growing under autotrophic conditions, ''C. necator'' fixes carbon through the reductive pentose phosphate pathway. It is known to produce and sequester polyhydroxyalkanoate (PHA) plastics when exposed to excess amounts of sugar substrate. PHA can accumulate to levels around 90% of the cell's dry weight. To better characterize the lifestyle of ''C. necator'', the genomes of two strains have been sequenced.

Hydrogenases

''Cupriavidus necator'' can use hydrogen gas as a source of energy when growing under autotrophic conditions. It contains four different hydrogenases that have i-Feactive sites and all perform this reaction:
:H₂ $\rightleftharpoons$ 2H⁺ + 2e⁻
The hydrogenases of ''C. necator'' are like other typical i-Fehydrogenases because they are made up of a large and a small subunit. The large subunit is where the i-Feactive site resides and the small subunit is composed of e-Sclusters. However, the hydrogenases of ''C. necator'' are different from typical i-Fehydrogenases because they are tolerant to oxygen and are not inhibited by CO. While the four hydrogenases perform the same reaction in the cell, each hydrogenase is linked to a different cellular process. The differences between the regulatory hydrogenase, membrane-bound hydrogenase, soluble hydrogenase and actinobacterial hydrogenase in ''C. necator'' are described below.

Regulatory hydrogenase

The first hydrogenase is a regulatory hydrogenase (RH) that signals to the cell hydrogen is present. The RH is a protein containing large and small i-Fehydrogenase subunits attached to a histidine protein kinase subunit. The hydrogen gas is oxidized at the i-Fecenter in the large subunit and in turn reduces the e-Sclusters in the small subunit. It is unknown whether the electrons are transferred from the e-Sclusters to the protein kinase domain. The histidine protein kinase activates a response regulator. The response regulator is active in the dephosphorylated form. The dephosphorylated response regulator promotes the transcription of the membrane bound hydrogenase and soluble hydrogenase.

Membrane-bound hydrogenase

The membrane-bound hydrogenase (MBH) is linked to the respiratory chain through a specific cytochrome b-related protein in ''C. necator''. Hydrogen gas is oxidized at the i-Feactive site in the large subunit and the electrons are shuttled through the e-Sclusters in the small subunit to the cytochrome b-like protein. The MBH is located on the outer cytoplasmic membrane. It recovers energy for the cell by funneling electrons into the respiratory chain and by increasing the proton gradient. The MBH in ''C. necator'' is not inhibited by CO and is tolerant to oxygen.

NAD+-reducing hydrogenase

The NAD+-reducing hydrogenase (soluble hydrogenase, SH) creates a NADH-reducing equivalence by oxidizing hydrogen gas. The SH is a heterohexameric protein with two subunits making up the large and small subunits of the i-Fehydrogenase and the other two subunits comprising a reductase module similar to the one of Complex I. The i-Feactive site oxidized hydrogen gas which transfers electrons to a FMN-a cofactor, then to a e-Scluster relay of the small hydrogenase subunit and the reductase module, then to another FMN-b cofactor and finally to NAD⁺. The reducing equivalences are then used for fixing carbon dioxide when ''C. necator'' is growing autotrophically.

The active site of the SH of ''C. necator'' H16 has been extensively studied because ''C. necator'' H16 can be produced in large amounts, can be genetically manipulated, and can be analyzed with spectrographic techniques. However, no crystal structure is currently available for the ''C. necator'' H16 soluble hydrogenase in the presence of oxygen to determine the interactions of the active site with the rest of the protein.

Typical anaerobic i-Fehydrogenases

The i-Fehydrogenase from '' Desulfovibrio vulgaris'' and ''D. gigas'' have similar protein structures to each other and represent typical i-Fehydrogenases. The large subunit contains the i-Feactive site buried deep in the core of the protein and the small subunit contains e-Sclusters. The Ni atom is coordinated to the Desulfovibrio hydrogenase by 4 cysteine ligands. Two of these same cysteine ligands also bridge the Fe of the i-Feactive site. The Fe atom also contains three ligands, one CO and two CN that complete the active site. These additional ligands might contribute to the reactivity or help stabilize the Fe atom in the low spin +2 oxidation state. Typical iFehydrogenases like those of ''D. vulgaris'' and ''D. gigas'' are poisoned by oxygen because an oxygen atom binds strongly to the NiFe active site.

''C. necator'' oxygen-tolerant SH

The SH in ''C. necator'' are unique for other organisms because it is oxygen tolerant. The active site of the SH has been studied to learn why this protein is tolerant to oxygen. A recent study showed that oxygen tolerance as implemented in the SH is based on a continuous catalytically driven detoxification of ef missing  The genes encoding this SH can be up-regulated under heterotrophic growth condition using glycerol in the growth media and this enables aerobic production and purification of the same enzyme.

Applications

The oxygen-tolerant hydrogenases of ''C. necator'' have been studied for diverse purposes. ''C. necator'' was studied as an attractive organism to help support life in space. It can fix carbon dioxide as a carbon source, use the urea in urine as a nitrogen source, and use hydrogen as an energy source to create dense cultures that could be used as a source of protein.

Electrolysis of water is one way of creating oxygenic atmosphere in space and ''C. necator'' was investigated to recycle the hydrogen produced during this process.

Oxygen-tolerant hydrogenases are being used to investigate biofuels. Hydrogenases from ''C. necator'' have been used to coat electrode surfaces to create hydrogen fuel cells tolerant to oxygen and carbon monoxide and to design hydrogen-producing light complexes. In addition, the hydrogenases from ''C. necator'' have been used to create hydrogen sensors. Genetically modified ''C. necator'' can produce isobutanol from that can directly substitute or blend with gasoline. The organism emits the isobutanol without having to be destroyed to obtain it.

Industrial uses

Researchers at UCLA have genetically modified a strain of the species ''C. necator'' (formerly known as ''R. eutropha'' H16) to produce isobutanol from CO₂ feedstock using electricity produced by a solar cell. The project, funded by the U.S. Dept. of Energy, is a potential high energy-density electrofuel that could use existing infrastructure to replace oil as a transportation fuel.

Chemical and biomolecular engineers at Korea Advanced Institute of Science and Technology has presented a scalable way to convert in the air into a polyester by means of the ''C. necator''.

References

External links

Type strain of ''Cupriavidus necator'' at Bac''Dive'' - the Bacterial Diversity Metadatabase

{{Taxonbar, from=Q148753

Burkholderiaceae
Bacteria described in 1969
Formatotrophs