Physcomitrium Patens
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Physcomitrium Patens
''Physcomitrella patens'' is a synonym of ''Physcomitrium patens'', the spreading earthmoss. It is a moss, a bryophyte used as a model organism for studies on plant evolution, development, and physiology. Distribution and ecology ''Physcomitrella patens'' is an early colonist of exposed mud and earth around the edges of pools of water. ''P. patens'' has a disjunct distribution in temperateness, temperate parts of the world, with the exception of South America. The standard laboratory strain is the "Gransden" isolate, collected by Harold Leslie Keer Whitehouse, H. Whitehouse from Gransden and Waresley Woods, Gransden Wood, in Cambridgeshire in 1962. Model organism Mosses share fundamental genetic and physiological processes with vascular plants, although the two lineages diverged early in land-plant evolution. A comparative study between modern representatives of the two lines may give insight into the evolution of mechanisms that contribute to the complexity of modern ...
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Johann Hedwig
Johann Hedwig (8 December 1730 – 18 February 1799), also styled as Johannes Hedwig, was a German botanist notable for his studies of mosses. He is sometimes called the "father of bryology". He is known for his particular observations of sexual reproduction in the cryptogams. Many of his writings were in Latin, and his name is rendered in Latin as Ioannis Hedwig or Ioanne Hedwig. Early life Hedwig was born in Brașov, Transylvania, on 8 December 1730. As the son of a shoemaker, he grew up in poverty. It was in his childhood he became fascinated with mosses.Isely, Duane. One Hundred and One Botanists. Purdue University Press, 2002. He went on to study medicine at the University of Leipzig, and received his medical degree in 1759. Career After receiving his degree, Hedwig worked as a physician for the next twenty years. When he was not granted a license to practice in Transylvania with his Leipzig degree, he worked as a general practitioner in Chemnitz. It was during this tim ...
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Vascular Plants
Vascular plants (), also called tracheophytes (, ) or collectively tracheophyta (; ), are plants that have lignified tissues (the xylem) for conducting water and minerals throughout the plant. They also have a specialized non-lignified tissue (the phloem) to conduct products of photosynthesis. The group includes most land plants ( accepted known species) excluding mosses. Vascular plants include the clubmosses, horsetails, ferns, gymnosperms (including conifers), and angiosperms (flowering plants). They are contrasted with nonvascular plants such as mosses and green algae. Scientific names for the vascular plants group include Tracheophyta, Tracheobionta and Equisetopsida ''sensu lato''. Some early land plants (the rhyniophytes) had less developed vascular tissue; the term eutracheophyte has been used for all other vascular plants, including all living ones. Historically, vascular plants were known as "higher plants", as it was believed that they were further evolved than o ...
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Genome
A genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as regulatory sequences (see non-coding DNA), and often a substantial fraction of junk DNA with no evident function. Almost all eukaryotes have mitochondrial DNA, mitochondria and a small mitochondrial genome. Algae and plants also contain chloroplast DNA, chloroplasts with a chloroplast genome. The study of the genome is called genomics. The genomes of many organisms have been Whole-genome sequencing, sequenced and various regions have been annotated. The first genome to be sequenced was that of the virus φX174 in 1977; the first genome sequence of a prokaryote (''Haemophilus influenzae'') was published in 1995; the yeast (''Saccharomyces cerevisiae'') genome was the first eukaryotic genome to be sequenced in 1996. The Human Genome Project ...
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Evolution
Evolution is the change in the heritable Phenotypic trait, characteristics of biological populations over successive generations. It occurs when evolutionary processes such as natural selection and genetic drift act on genetic variation, resulting in certain characteristics becoming more or less common within a population over successive generations. The process of evolution has given rise to biodiversity at every level of biological organisation. The scientific theory of evolution by natural selection was conceived independently by two British naturalists, Charles Darwin and Alfred Russel Wallace, in the mid-19th century as an explanation for why organisms are adapted to their physical and biological environments. The theory was first set out in detail in Darwin's book ''On the Origin of Species''. Evolution by natural selection is established by observable facts about living organisms: (1) more offspring are often produced than can possibly survive; (2) phenotypic variatio ...
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Arabidopsis Thaliana
''Arabidopsis thaliana'', the thale cress, mouse-ear cress or arabidopsis, is a small plant from the mustard family (Brassicaceae), native to Eurasia and Africa. Commonly found along the shoulders of roads and in disturbed land, it is generally considered a weed. A winter annual with a relatively short lifecycle, ''A. thaliana'' is a popular model organism in plant biology and genetics. For a complex multicellular eukaryote, ''A. thaliana'' has a relatively small genome of around 135 Base pair#Length measurements, megabase pairs. It was the first plant to have its genome sequenced, and is an important tool for understanding the molecular biology of many plant traits, including flower development and phototropism, light sensing. Description ''Arabidopsis thaliana'' is an annual plant, annual (rarely biennial plant, biennial) plant, usually growing to 20–25 cm tall. The leaf, leaves form a rosette at the base of the plant, with a few leaves also on the flowering Plant ste ...
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Genes
In biology, the word gene has two meanings. The Mendelian gene is a basic unit of heredity. The molecular gene is a sequence of nucleotides in DNA that is transcribed to produce a functional RNA. There are two types of molecular genes: protein-coding genes and non-coding genes. During gene expression (the synthesis of Gene product, RNA or protein from a gene), DNA is first transcription (biology), copied into RNA. RNA can be non-coding RNA, directly functional or be the intermediate protein biosynthesis, template for the synthesis of a protein. The transmission of genes to an organism's offspring, is the basis of the inheritance of phenotypic traits from one generation to the next. These genes make up different DNA sequences, together called a genotype, that is specific to every given individual, within the gene pool of the population (biology), population of a given species. The genotype, along with environmental and developmental factors, ultimately determines the phenotype ...
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Reverse Genetics
Reverse genetics is a method in molecular genetics that is used to help understand the function(s) of a gene by analysing the phenotypic effects caused by genetically engineering specific nucleic acid sequences within the gene. The process proceeds in the opposite direction to forward genetic screens of classical genetics. While forward genetics seeks to find the genetic basis of a phenotype or trait, reverse genetics seeks to find what phenotypes are controlled by particular genetic sequences. Automated DNA sequencing generates large volumes of genomic sequence data relatively rapidly. Many genetic sequences are discovered in advance of other, less easily obtained, biological information. Reverse genetics attempts to connect a given genetic sequence with specific effects on the organism. Reverse genetics systems can also allow the recovery and generation of infectious or defective viruses with desired mutations. This allows the ability to study the virus ''in vitro'' and ''in v ...
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Gene Knockout
Gene knockouts (also known as gene deletion or gene inactivation) are a widely used genetic engineering technique that involves the gene targeting, targeted removal or inactivation of a specific gene within an organism's genome. This can be done through a variety of methods, including homologous recombination, CRISPR gene editing, CRISPR-Cas9, and transcription activator-like effector nuclease, TALENs. One of the main advantages of gene knockouts is that they allow researchers to study the function of a specific gene in vivo, and to understand the role of the gene in normal development and physiology as well as in the pathology of diseases. By studying the phenotype of the organism with the knocked out gene, researchers can gain insights into the biological processes that the gene is involved in. There are two main types of gene knockouts: complete and conditional. A complete gene knockout permanently inactivates the gene, while a conditional gene knockout allows for the gene to b ...
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Gene Targeting
Gene targeting is a biotechnological tool used to change the DNA sequence of an organism (hence it is a form of Genome Editing). It is based on the natural DNA-repair mechanism of Homology Directed Repair (HDR), including Homologous Recombination. Gene targeting can be used to make a range of sizes of DNA edits, from larger DNA edits such as inserting entire new genes into an organism, through to much smaller changes to the existing DNA such as a single base-pair change. Gene targeting relies on the presence of a repair template to introduce the user-defined edits to the DNA. The user (usually a scientist) will design the repair template to contain the desired edit, flanked by DNA sequence corresponding (homologous) to the region of DNA that the user wants to edit; hence the edit is ''targeted'' to a particular genomic region. In this way Gene Targeting is distinct from natural homology-directed repair, during which the ‘natural’ DNA repair template of the sister chromatid i ...
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DNA Sequence
A nucleic acid sequence is a succession of bases within the nucleotides forming alleles within a DNA (using GACT) or RNA (GACU) molecule. This succession is denoted by a series of a set of five different letters that indicate the order of the nucleotides. By convention, sequences are usually presented from the 5' end to the 3' end. For DNA, with its double helix, there are two possible directions for the notated sequence; of these two, the sense strand is used. Because nucleic acids are normally linear (unbranched) polymers, specifying the sequence is equivalent to defining the covalent structure of the entire molecule. For this reason, the nucleic acid sequence is also termed the primary structure. The sequence represents genetic information. Biological deoxyribonucleic acid represents the information which directs the functions of an organism. Nucleic acids also have a secondary structure and tertiary structure. Primary structure is sometimes mistakenly referred to as "prim ...
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Annual Review Of Plant Biology
''Annual Review of Plant Biology'' is a peer-reviewed scientific journal published by Annual Reviews. It was first published in 1950 as the ''Annual Review of Plant Physiology''. Sabeeha Merchant has been the editor since 2005, making her the longest-serving editor in the journal's history after Winslow Briggs (1973–1993). ''Journal Citation Reports'' lists the journal's 2023 impact factor as 21.3, ranking it first of 265 journal titles in the category "Plant Sciences". As of 2023, it is being published as open access, under the Subscribe to Open model. History Beginning in 1947, the publishing nonprofit Annual Reviews began asking plant physiologists if it would be useful to have an annual journal that published review articles summarizing the recent literature in the field. Responses indicated that this would be very favorable, and the ''Annual Review of Plant Physiology'' published its first volume in 1950. Its founding editor was Daniel I. Arnon. It was thus the ...
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Plant Journal
''The Plant Journal'' is a peer-reviewed scientific journal of plant science published by Wiley-Blackwell for the Society for Experimental Biology. It was established in 1991 and is currently edited by Katherine J. Denby. The journal is published twice per month. Indexing and abstracting ''The Plant Journal'' is abstracted and indexed in several bibliographic databases: According to the ''Journal Citation Reports'', the journal has a 2021 impact factor The impact factor (IF) or journal impact factor (JIF) of an academic journal is a type of journal ranking. Journals with higher impact factor values are considered more prestigious or important within their field. The Impact Factor of a journa ... of 7.091, ranking it 17th out of 238 journals in the category "Plant Sciences". References Further reading * External links *''The Plant Journal''at the Society of Experimental Biology {{DEFAULTSORT:Plant Journal, The Academic journals established in 1991 English-language jo ...
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