Urceolus
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''Urceolus'' (, 'pitcher') is a
genus Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
of
heterotrophic A heterotroph (; ) is an organism that cannot produce its own food, instead taking nutrition from other sources of organic carbon, mainly plant or animal matter. In the food chain, heterotrophs are primary, secondary and tertiary consumers, but ...
flagellate A flagellate is a cell or organism with one or more whip-like appendages called flagella. The word ''flagellate'' also describes a particular construction (or level of organization) characteristic of many prokaryotes and eukaryotes and the ...
s belonging to the
Euglenozoa Euglenozoa are a large group of flagellate Discoba. They include a variety of common free-living species, as well as a few important parasites, some of which infect humans. Euglenozoa are represented by four major groups, ''i.e.,'' Kinetoplastea, ...
, a
phylum In biology, a phylum (; : phyla) is a level of classification, or taxonomic rank, that is below Kingdom (biology), kingdom and above Class (biology), class. Traditionally, in botany the term division (taxonomy), division has been used instead ...
of
single-celled A unicellular organism, also known as a single-celled organism, is an organism that consists of a single cell (biology), cell, unlike a multicellular organism that consists of multiple cells. Organisms fall into two general categories: prokaryotic ...
eukaryote The eukaryotes ( ) constitute the Domain (biology), domain of Eukaryota or Eukarya, organisms whose Cell (biology), cells have a membrane-bound cell nucleus, nucleus. All animals, plants, Fungus, fungi, seaweeds, and many unicellular organisms ...
s or
protist A protist ( ) or protoctist is any eukaryotic organism that is not an animal, land plant, or fungus. Protists do not form a natural group, or clade, but are a paraphyletic grouping of all descendants of the last eukaryotic common ancest ...
s. Described by Russian
biologist A biologist is a scientist who conducts research in biology. Biologists are interested in studying life on Earth, whether it is an individual Cell (biology), cell, a multicellular organism, or a Community (ecology), community of Biological inter ...
Konstantin Mereschkowsky in 1877, its
type species In International_Code_of_Zoological_Nomenclature, zoological nomenclature, a type species (''species typica'') is the species name with which the name of a genus or subgenus is considered to be permanently taxonomically associated, i.e., the spe ...
is '' Urceolus alenizini''. Species of this genus are characterized by deformable flask-shaped cells that exhibit at least one
flagellum A flagellum (; : flagella) (Latin for 'whip' or 'scourge') is a hair-like appendage that protrudes from certain plant and animal sperm cells, from fungal spores ( zoospores), and from a wide range of microorganisms to provide motility. Many pr ...
that is active at the tip, arising from a neck-like structure that also hosts the feeding apparatus. They are found in a variety of
water body A body of water or waterbody is any significant accumulation of water on the surface of Earth or another planet. The term most often refers to oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rare ...
sediment Sediment is a solid material that is transported to a new location where it is deposited. It occurs naturally and, through the processes of weathering and erosion, is broken down and subsequently sediment transport, transported by the action of ...
s across the globe. According to
evolutionary Evolution is the change in the heritable characteristics of biological populations over successive generations. It occurs when evolutionary processes such as natural selection and genetic drift act on genetic variation, resulting in certa ...
studies, ''Urceolus'' belongs to a group of Euglenozoa known as
peranemid The peranemids are a group of phagotrophic flagellates, single-celled eukaryotes or protists. They belong to the Euglenida, a diverse lineage of flagellates that contains the closely related euglenophyte algae. Like these algae, peranemids hav ...
s, closely related to the euglenophyte algae.


Description

''Urceolus''
species A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), ...
are
single-celled A unicellular organism, also known as a single-celled organism, is an organism that consists of a single cell (biology), cell, unlike a multicellular organism that consists of multiple cells. Organisms fall into two general categories: prokaryotic ...
eukaryotes The eukaryotes ( ) constitute the domain of Eukaryota or Eukarya, organisms whose cells have a membrane-bound nucleus. All animals, plants, fungi, seaweeds, and many unicellular organisms are eukaryotes. They constitute a major group of ...
or
protist A protist ( ) or protoctist is any eukaryotic organism that is not an animal, land plant, or fungus. Protists do not form a natural group, or clade, but are a paraphyletic grouping of all descendants of the last eukaryotic common ancest ...
s. Their
cell Cell most often refers to: * Cell (biology), the functional basic unit of life * Cellphone, a phone connected to a cellular network * Clandestine cell, a penetration-resistant form of a secret or outlawed organization * Electrochemical cell, a de ...
s are sack-shaped, narrow at the
anterior Standard anatomical terms of location are used to describe unambiguously the anatomy of humans and other animals. The terms, typically derived from Latin or Greek roots, describe something in its standard anatomical position. This position pro ...
end and expanded at the posterior end. The cells exhibit flexibility and squirming movements, more vigorous in some species. Like other
phagotrophic Phagocytosis () is the process by which a cell uses its plasma membrane to engulf a large particle (≥ 0.5 μm), giving rise to an internal compartment called the phagosome. It is one type of endocytosis. A cell that performs phagocytosis is ca ...
protists, they present an
organelle In cell biology, an organelle is a specialized subunit, usually within a cell (biology), cell, that has a specific function. The name ''organelle'' comes from the idea that these structures are parts of cells, as Organ (anatomy), organs are to th ...
for ingestion known as a 'feeding apparatus', an arrangement of
microtubules Microtubules are polymers of tubulin that form part of the cytoskeleton and provide structure and shape to eukaryotic cells. Microtubules can be as long as 50 micrometres, as wide as 23 to 27  nm and have an inner diameter between 11 an ...
beneath a concave portion of the
cell membrane The cell membrane (also known as the plasma membrane or cytoplasmic membrane, and historically referred to as the plasmalemma) is a biological membrane that separates and protects the interior of a cell from the outside environment (the extr ...
used for ingesting prey through
phagocytosis Phagocytosis () is the process by which a cell (biology), cell uses its plasma membrane to engulf a large particle (≥ 0.5 μm), giving rise to an internal compartment called the phagosome. It is one type of endocytosis. A cell that performs ph ...
. Their cell body is deformable, but can be distinguished from other
euglenid Euglenids or euglenoids are one of the best-known groups of eukaryotic flagellates: single-celled organisms with flagella, or whip-like tails. They are classified in the phylum Euglenophyta, class Euglenida or Euglenoidea. Euglenids are common ...
s by a flared collar or 'neck' in the anterior region, which hosts a canal where the feeding apparatus and the
flagellum A flagellum (; : flagella) (Latin for 'whip' or 'scourge') is a hair-like appendage that protrudes from certain plant and animal sperm cells, from fungal spores ( zoospores), and from a wide range of microorganisms to provide motility. Many pr ...
are located. very small in some species. They have one emergent
flagellum A flagellum (; : flagella) (Latin for 'whip' or 'scourge') is a hair-like appendage that protrudes from certain plant and animal sperm cells, from fungal spores ( zoospores), and from a wide range of microorganisms to provide motility. Many pr ...
, but it is mostly active only at the tip. A rudimentary second flagellum is present in ''U. cyclostomus''.


Ecology and distribution

''Urceolus'' species are
heterotrophic A heterotroph (; ) is an organism that cannot produce its own food, instead taking nutrition from other sources of organic carbon, mainly plant or animal matter. In the food chain, heterotrophs are primary, secondary and tertiary consumers, but ...
, and feed on
algae Algae ( , ; : alga ) is an informal term for any organisms of a large and diverse group of photosynthesis, photosynthetic organisms that are not plants, and includes species from multiple distinct clades. Such organisms range from unicellular ...
through
phagocytosis Phagocytosis () is the process by which a cell (biology), cell uses its plasma membrane to engulf a large particle (≥ 0.5 μm), giving rise to an internal compartment called the phagosome. It is one type of endocytosis. A cell that performs ph ...
. They have been reported in marine and
freshwater Fresh water or freshwater is any naturally occurring liquid or frozen water containing low concentrations of dissolved salts and other total dissolved solids. The term excludes seawater and brackish water, but it does include non-salty mi ...
sediment Sediment is a solid material that is transported to a new location where it is deposited. It occurs naturally and, through the processes of weathering and erosion, is broken down and subsequently sediment transport, transported by the action of ...
s of various locations, both
temperate In geography, the temperate climates of Earth occur in the middle latitudes (approximately 23.5° to 66.5° N/S of the Equator), which span between the tropics and the polar regions of Earth. These zones generally have wider temperature ran ...
and
tropical The tropics are the regions of Earth surrounding the equator, where the sun may shine directly overhead. This contrasts with the temperate or polar regions of Earth, where the Sun can never be directly overhead. This is because of Earth's ax ...
, such as the Norwegian
Oslofjord The Oslofjord (, ; ) is an inlet in southeastern Norway. The fjord begins at the small village of Bonn in Frogn, Frogn Municipality and stretching northwards to the city of Oslo, and then curving to the east and then south again. It then flows s ...
, lake in
Sweden Sweden, formally the Kingdom of Sweden, is a Nordic countries, Nordic country located on the Scandinavian Peninsula in Northern Europe. It borders Norway to the west and north, and Finland to the east. At , Sweden is the largest Nordic count ...
, the Danish portion of the
Wadden Sea The Wadden Sea ( ; ; or ; ; ; ) is an intertidal zone in the southeastern part of the North Sea. It lies between the coast of northwestern continental Europe and the range of low-lying Frisian Islands, forming a shallow body of water with tida ...
, numerous ponds and wetlands in Czech Republic and Russia, tropical
Australia Australia, officially the Commonwealth of Australia, is a country comprising mainland Australia, the mainland of the Australia (continent), Australian continent, the island of Tasmania and list of islands of Australia, numerous smaller isl ...
, the Juma River in
China China, officially the People's Republic of China (PRC), is a country in East Asia. With population of China, a population exceeding 1.4 billion, it is the list of countries by population (United Nations), second-most populous country after ...
, and
Fiji Fiji, officially the Republic of Fiji, is an island country in Melanesia, part of Oceania in the South Pacific Ocean. It lies about north-northeast of New Zealand. Fiji consists of an archipelago of more than 330 islands—of which about ...
. Like most peranemids, they live on the bottom mud of various
water bodies A body of water or waterbody is any significant accumulation of water on the surface of Earth or another planet. The term most often refers to oceans, seas, and lakes, but it includes smaller pools of water such as ponds, wetlands, or more rare ...
, and only occasionally find their way into the water column, drifting among the
plankton Plankton are the diverse collection of organisms that drift in Hydrosphere, water (or atmosphere, air) but are unable to actively propel themselves against ocean current, currents (or wind). The individual organisms constituting plankton are ca ...
.


Evolution

''Urceolus'' is a genus of
phagotrophic Phagocytosis () is the process by which a cell uses its plasma membrane to engulf a large particle (≥ 0.5 μm), giving rise to an internal compartment called the phagosome. It is one type of endocytosis. A cell that performs phagocytosis is ca ...
flagellates belonging to the Euglenida, a highly diverse group that also contains the phototrophic euglenophyte algae. One trait that has been used to investigate the evolution from heterotrophic euglenids towards their phototrophic counterpart is the number of strips within the feeding canal. In '' Urceolus cyclostomus'', the canal has a number of strips equivalent to the number of strips along the entire exterior of the cell (around 40). In contrast, more ' basal' heterotrophic euglenids such as ''
Dinema ''Dinema'' is the genus name of: * ''Dinema'' (plant), a genus of orchids. * ''Dinema'' (alga), a genus of euglenids. {{Genus disambiguation ...
'' have half as many strips in the canal as the cell exterior (around 20). This is known as the 'second strip duplication event', an evolutionary innovation that presumably led to more plastic movement (
metaboly Spirocuta () is a clade of euglenids, single-celled eukaryotes or protists belonging to the phylum Euglenozoa. They are distinguished from other euglenids by active deformation of their cell shape, a process called euglenid motion or metaboly. Thi ...
) and an increase in cell size for a
clade In biology, a clade (), also known as a Monophyly, monophyletic group or natural group, is a group of organisms that is composed of a common ancestor and all of its descendants. Clades are the fundamental unit of cladistics, a modern approach t ...
uniting ''Urceolus'', ''
Peranema ''Peranema'' is a genus of free-living phagotrophic euglenids (Euglenida; Euglenozoa; Excavata). There are more than 20 nominal species, varying in size between 8 and 200 micrometers. ''Peranema'' cells are gliding flagellates found in freshw ...
'' and the phototrophic euglenophytes, known as
Spirocuta Spirocuta () is a clade of euglenids, single-celled eukaryotes or protists belonging to the phylum Euglenozoa. They are distinguished from other euglenids by active deformation of their cell shape, a process called euglenid motion or metaboly. Thi ...
. Further morphological traits seen in ''Urceolus'', such as a swelling around the flagellum that resembles a photoreceptor, and a stigma that resembles the eyespot of euglenophyte algae, led to the hypothesis that ''Urceolus'' was the
sister group In phylogenetics, a sister group or sister taxon, also called an adelphotaxon, comprises the closest relative(s) of another given unit in an evolutionary tree. Definition The expression is most easily illustrated by a cladogram: Taxon A and ...
of the euglenophytes.
Phylogenetic analyses In biology, phylogenetics () is the study of the evolutionary history of life using observable characteristics of organisms (or genes), which is known as Computational phylogenetics, phylogenetic inference. It infers the relationship among organ ...
through DNA sequences place all peranemids (e.g., ''Urceolus'', ''
Peranema ''Peranema'' is a genus of free-living phagotrophic euglenids (Euglenida; Euglenozoa; Excavata). There are more than 20 nominal species, varying in size between 8 and 200 micrometers. ''Peranema'' cells are gliding flagellates found in freshw ...
'' and others) as a whole as the sister group to euglenophytes, rather than any particular genus. The following
cladogram A cladogram (from Greek language, Greek ''clados'' "branch" and ''gramma'' "character") is a diagram used in cladistics to show relations among organisms. A cladogram is not, however, an Phylogenetic tree, evolutionary tree because it does not s ...
, based on a study published in 2021, represents these findings:


Systematics


Taxonomic history

The
genus Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
''Urceolus'' was first described by Russian biologist Konstantin Mereschkowsky in 1877, in a memoir on the
protozoa Protozoa (: protozoan or protozoon; alternative plural: protozoans) are a polyphyletic group of single-celled eukaryotes, either free-living or parasitic, that feed on organic matter such as other microorganisms or organic debris. Historically ...
of the north of Russia. He described it to accommodate a rare species of flagellate that he discovered that same year in the
White Sea The White Sea (; Karelian language, Karelian and ; ) is a southern inlet of the Barents Sea located on the northwest coast of Russia. It is surrounded by Karelia to the west, the Kola Peninsula to the north, and the Kanin Peninsula to the nort ...
, near the
Solovetsky Monastery The Solovetsky Monastery (, ) is a fortified monastery located on the Solovetsky Islands in the White Sea in northern Russia. It was one of the largest Christian citadels in northern Russia before it was converted into a Soviet Union, Soviet pris ...
, named '' U. alenizini''. He characterized this new genus by the unique urn or pitcher-shaped cells, and accordingly named it ''
urceolus ''Urceolus'' (, 'pitcher') is a genus of heterotrophic flagellates belonging to the Euglenozoa, a phylum of single-celled eukaryotes or protists. Described by Russian biologist Konstantin Mereschkowsky in 1877, its type species is ''Urceolus ale ...
'' meaning 'pitcher' in Latin. The next year, German zoologist Friderich Stein described a new flagellate by the name of '' Phialonema cyclostomum'', the first species of its genus. Upon comparing the two species, Mereschkowsky concluded that the appearance and description of ''P. cyclostomum'' matched his description of ''Urceolus'', and he transferred it to his genus as ''U. cyclostomus''. Consequently, ''Phialonema'' became a
junior synonym In taxonomy, the scientific classification of living organisms, a synonym is an alternative scientific name for the accepted scientific name of a taxon. The botanical and zoological codes of nomenclature treat the concept of synonymy differently. ...
of ''Urceolus'' in 1881. In 1887, American protozoologist Alfred Cheatham Stokes described the genus ''Urceolopsis'' to accommodate the species ''U. sabulosus''. This genus is essentially equal in appearance to ''Urceolus'', with the only difference being that the cell surface is covered in adherent sand grains. It was later synonimised to ''Urceolus'' for that reason. ''Urceolus'' and other colorless, non-
photosynthetic Photosynthesis ( ) is a Biological system, system of biological processes by which Photoautotrophism, photosynthetic organisms, such as most plants, algae, and cyanobacteria, convert light energy, typically from sunlight, into the chemical ener ...
flexible flagellates such as ''
Heteronema ''Heteronema'' is a genus of phagotrophic, flagellated euglenoids that are most widely distributed in fresh water environments.Guiry, M. D.; Guiry, G. M. (2012). “Heteronema Dujardin, 1841”. Retrieved February 14, 2019, fro/ref> This genus c ...
'', ''
Peranema ''Peranema'' is a genus of free-living phagotrophic euglenids (Euglenida; Euglenozoa; Excavata). There are more than 20 nominal species, varying in size between 8 and 200 micrometers. ''Peranema'' cells are gliding flagellates found in freshw ...
'' and ''
Anisonema ''Anisonema'' is a genus of colorless flagellates that occur in marine, brackish, and freshwater habitats. The cell is typically ovoid, somewhat flattened, and rigid. The name ''Anisonema'' derives from Greek for "unequal thread", in reference t ...
'' were initially lumped together in the family
Peranemidae The peranemids are a group of phagotrophic flagellates, single-celled eukaryotes or protists. They belong to the Euglenida, a diverse lineage of flagellates that contains the closely related euglenophyte algae. Like these algae, peranemids have ...
, while similar but phototrophic, green-coloured algae such as ''
Euglena ''Euglena'' is a genus of Unicellular organism, single-celled, flagellate eukaryotes. It is the best-known and most widely studied member of the class Euglenoidea, a diverse group containing some 54 genera and at least 200 species. Species of '' ...
'' composed the family Euglenidae. Both families belong to the Euglenida, one of the major groups within the
phylum In biology, a phylum (; : phyla) is a level of classification, or taxonomic rank, that is below Kingdom (biology), kingdom and above Class (biology), class. Traditionally, in botany the term division (taxonomy), division has been used instead ...
Euglenozoa Euglenozoa are a large group of flagellate Discoba. They include a variety of common free-living species, as well as a few important parasites, some of which infect humans. Euglenozoa are represented by four major groups, ''i.e.,'' Kinetoplastea, ...
, a basal group of
eukaryotes The eukaryotes ( ) constitute the domain of Eukaryota or Eukarya, organisms whose cells have a membrane-bound nucleus. All animals, plants, fungi, seaweeds, and many unicellular organisms are eukaryotes. They constitute a major group of ...
. The taxonomic status of Peranemidae has changed through the years: first classified in the
paraphyletic Paraphyly is a taxonomic term describing a grouping that consists of the grouping's last common ancestor and some but not all of its descendant lineages. The grouping is said to be paraphyletic ''with respect to'' the excluded subgroups. In co ...
order Heteronematales, it later became the sole family of the order
Peranemida The peranemids are a group of phagotrophic flagellates, single-celled eukaryotes or protists. They belong to the Euglenida, a diverse lineage of flagellates that contains the closely related euglenophyte algae. Like these algae, peranemids ha ...
, regarded as the closest relatives of the photosynthetic euglenids. Many colorless euglenids were transferred from Peranemidae to other groups, but ''Urceolus'' is one of the few genera that remains in the family.


Classification

''Urceolus'' contains the following species: * '' Urceolus alenizini'' * '' Urceolus cornutus'' * '' Urceolus costatus'' * '' Urceolus cristatus'' * '' Urceolus cyclostomus''   = ''Phialonema cyclostomum'' * '' Urceolus gloeochlamys'' * '' Urceolus pascheri''   = ''U. gobii''   = ''U. ovatus'' * ''
Urceolus sabulosus ''Urceolus'' (, 'pitcher') is a genus of heterotrophic flagellates belonging to the Euglenozoa, a phylum of single-celled eukaryotes or protists. Described by Russian biologist Konstantin Mereschkowsky in 1877, its type species is ''Urceolus ale ...
''   = ''Urceolopsis sabulosa''   = ''Urceolus ovatus'' Several authors note that there is considerable ambiguity in the identification of ''Urceolus'' species, because most original descriptions are inadequate and confident identification is not always possible. In addition, detail is often obscured by adhering particles of detritus.


Notes


References

{{Taxonbar, from=Q2673429 Taxa described in 1879 Euglenozoa genera Taxa named by Konstantin Mereschkowsky