Stromatolites ( ) or stromatoliths () are layered
sedimentary
Sedimentary rocks are types of rock formed by the cementation of sediments—i.e. particles made of minerals (geological detritus) or organic matter (biological detritus)—that have been accumulated or deposited at Earth's surface. Sedime ...
formations (
microbialite) that are created mainly by
photosynthetic
Photosynthesis ( ) is a Biological system, system of biological processes by which Photoautotrophism, photosynthetic organisms, such as most plants, algae, and cyanobacteria, convert light energy, typically from sunlight, into the chemical ener ...
microorganisms such as
cyanobacteria
Cyanobacteria ( ) are a group of autotrophic gram-negative bacteria that can obtain biological energy via oxygenic photosynthesis. The name "cyanobacteria" () refers to their bluish green (cyan) color, which forms the basis of cyanobacteri ...
,
sulfate-reducing bacteria
Sulfate-reducing microorganisms (SRM) or sulfate-reducing prokaryotes (SRP) are a group composed of sulfate-reducing bacteria (SRB) and sulfate-reducing archaea (SRA), both of which can perform anaerobic respiration utilizing sulfate () as termina ...
, and
Pseudomonadota
Pseudomonadota (synonym "Proteobacteria") is a major phylum of gram-negative bacteria. Currently, they are considered the predominant phylum within the domain of bacteria. They are naturally found as pathogenic and free-living (non- parasitic) ...
(formerly proteobacteria). These microorganisms produce adhesive compounds that
cement
A cement is a binder, a chemical substance used for construction that sets, hardens, and adheres to other materials to bind them together. Cement is seldom used on its own, but rather to bind sand and gravel ( aggregate) together. Cement mi ...
sand and other rocky materials to form mineral "
microbial mats". In turn, these mats build up layer by layer, growing gradually over time.
This process generates the characteristic
lamination of stromatolites, a feature that is hard to interpret, in terms of its temporal and environmental significance. Different styles of stromatolite lamination have been described,
which can be studied through microscopic and mathematical methods.
A stromatolite may grow to a meter or more.
Fossilized stromatolites provide important records of some of the most ancient life. As of the
Holocene
The Holocene () is the current geologic time scale, geological epoch, beginning approximately 11,700 years ago. It follows the Last Glacial Period, which concluded with the Holocene glacial retreat. The Holocene and the preceding Pleistocene to ...
, living forms are rare.
Definition

Stromatolites are layered, biochemical, accretionary structures formed in shallow water by the trapping, binding and
cementation of sedimentary grains in
biofilm
A biofilm is a Syntrophy, syntrophic Microbial consortium, community of microorganisms in which cell (biology), cells cell adhesion, stick to each other and often also to a surface. These adherent cells become embedded within a slimy ext ...
s (specifically microbial mats), through the action of certain microbial lifeforms, especially
cyanobacteria
Cyanobacteria ( ) are a group of autotrophic gram-negative bacteria that can obtain biological energy via oxygenic photosynthesis. The name "cyanobacteria" () refers to their bluish green (cyan) color, which forms the basis of cyanobacteri ...
.
Ancient stromatolites

Morphology
Fossilized stromatolites exhibit a variety of forms and structures, or morphologies, including conical, stratiform, domal, columnar, and branching types. Stromatolites occur widely in the fossil record of the
Precambrian
The Precambrian ( ; or pre-Cambrian, sometimes abbreviated pC, or Cryptozoic) is the earliest part of Earth's history, set before the current Phanerozoic Eon. The Precambrian is so named because it preceded the Cambrian, the first period of t ...
but are rare today.
Very few
Archean
The Archean ( , also spelled Archaean or Archæan), in older sources sometimes called the Archaeozoic, is the second of the four geologic eons of Earth's history of Earth, history, preceded by the Hadean Eon and followed by the Proterozoic and t ...
stromatolites contain fossilized microbes, but fossilized microbes are sometimes abundant in
Proterozoic
The Proterozoic ( ) is the third of the four geologic eons of Earth's history, spanning the time interval from 2500 to 538.8 Mya, and is the longest eon of Earth's geologic time scale. It is preceded by the Archean and followed by the Phanerozo ...
stromatolites.
While features of some ancient apparent stromatolites are suggestive of biological activity, others possess features that are more consistent with
abiotic (non-biological) precipitation. Finding reliable ways to distinguish between biologically formed and abiotic stromatolites is an active area of research in geology.
[ Multiple morphologies of stromatolites may exist in a single local or geological stratum, depending on specific conditions at the time of their formation, such as water depth.
Most stromatolites are spongiostromate in texture, having no recognisable microstructure or cellular remains. A minority are porostromate, having recognisable microstructure; these are mostly unknown from the Precambrian but persist throughout the Palaeozoic and ]Mesozoic
The Mesozoic Era is the Era (geology), era of Earth's Geologic time scale, geological history, lasting from about , comprising the Triassic, Jurassic and Cretaceous Period (geology), Periods. It is characterized by the dominance of archosaurian r ...
. Since the Eocene
The Eocene ( ) is a geological epoch (geology), epoch that lasted from about 56 to 33.9 million years ago (Ma). It is the second epoch of the Paleogene Period (geology), Period in the modern Cenozoic Era (geology), Era. The name ''Eocene'' comes ...
, porostromate stromatolites are known only from freshwater settings.
Fossil record
Some Archean rock formations show macroscopic similarity to modern microbial structures, leading to the inference that these structures represent evidence of ancient life, namely stromatolites. However, others regard these patterns as being the result of natural material deposition or some other abiogenic mechanism. Scientists have argued for a biological origin of stromatolites due to the presence of organic globule clusters within the thin layers of the stromatolites, of aragonite
Aragonite is a carbonate mineral and one of the three most common naturally occurring crystal forms of calcium carbonate (), the others being calcite and vaterite. It is formed by biological and physical processes, including precipitation fr ...
nanocrystals (both features of current stromatolites), and of other microstructures in older stromatolites that parallel those in younger stromatolites that show strong indications of biological origin.
Stromatolites are a major constituent of the fossil record of the first forms of life on Earth. They peaked about 1.25 billion years ago (Ga)[ and subsequently declined in abundance and diversity, so that by the start of the Cambrian they had fallen to 20% of their peak. The most widely supported explanation is that stromatolite builders fell victim to grazing creatures (the Cambrian substrate revolution); this theory implies that sufficiently complex organisms were common around 1 Ga.] Another hypothesis is that protozoa
Protozoa (: protozoan or protozoon; alternative plural: protozoans) are a polyphyletic group of single-celled eukaryotes, either free-living or parasitic, that feed on organic matter such as other microorganisms or organic debris. Historically ...
such as foraminifera
Foraminifera ( ; Latin for "hole bearers"; informally called "forams") are unicellular organism, single-celled organisms, members of a phylum or class (biology), class of Rhizarian protists characterized by streaming granular Ectoplasm (cell bio ...
were responsible for the decline, favoring formation of thrombolites over stromatolites through microscopic bioturbation
Bioturbation is defined as the reworking of soils and sediments by animals or plants. It includes burrowing, ingestion, and defecation of sediment grains. Bioturbating activities have a profound effect on the environment and are thought to be a ...
.
Proterozoic
The Proterozoic ( ) is the third of the four geologic eons of Earth's history, spanning the time interval from 2500 to 538.8 Mya, and is the longest eon of Earth's geologic time scale. It is preceded by the Archean and followed by the Phanerozo ...
stromatolite microfossils (preserved by permineralization
Permineralization is a process of fossilization of bones and tissues in which mineral deposits form internal Casting, casts of organisms. Carried by water, these minerals fill the spaces within organic tissue. Because of the nature of the casts, p ...
in silica) include cyanobacteria and possibly some forms of the eukaryote
The eukaryotes ( ) constitute the Domain (biology), domain of Eukaryota or Eukarya, organisms whose Cell (biology), cells have a membrane-bound cell nucleus, nucleus. All animals, plants, Fungus, fungi, seaweeds, and many unicellular organisms ...
chlorophytes (that is, green algae
The green algae (: green alga) are a group of chlorophyll-containing autotrophic eukaryotes consisting of the phylum Prasinodermophyta and its unnamed sister group that contains the Chlorophyta and Charophyta/ Streptophyta. The land plants ...
). One genus
Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
of stromatolite very common in the geologic record is '' Collenia''.
The connection between grazer and stromatolite abundance is well documented in the younger Ordovician
The Ordovician ( ) is a geologic period and System (geology), system, the second of six periods of the Paleozoic Era (geology), Era, and the second of twelve periods of the Phanerozoic Eon (geology), Eon. The Ordovician spans 41.6 million years f ...
evolutionary radiation
An evolutionary radiation is an increase in taxonomic diversity that is caused by elevated rates of speciation, that may or may not be associated with an increase in morphological disparity. A significantly large and diverse radiation within ...
; stromatolite abundance also increased after the Late Ordovician mass extinction and Permian–Triassic extinction event
The Permian–Triassic extinction event (also known as the P–T extinction event, the Late Permian extinction event, the Latest Permian extinction event, the End-Permian extinction event, and colloquially as the Great Dying,) was an extinction ...
decimated marine animals, falling back to earlier levels as marine animals recovered. Fluctuations in metazoan population and diversity may not have been the only factor in the reduction in stromatolite abundance. Factors such as the chemistry of the environment may have been responsible for changes.
While prokaryotic cyanobacteria reproduce asexually through cell division, they were instrumental in priming the environment for the evolutionary development of more complex eukaryotic organisms. They are thought to be largely responsible for increasing the amount of oxygen in the primeval Earth's atmosphere through their continuing photosynthesis (see Great Oxygenation Event). They use water, carbon dioxide, and sunlight to create their food. A layer of polysaccharides
Polysaccharides (), or polycarbohydrates, are the most abundant carbohydrates found in food. They are long-chain polymeric carbohydrates composed of monosaccharide units bound together by glycosidic linkages. This carbohydrate can react with wat ...
often forms over mats of cyanobacterial cells. In modern microbial mats, debris from the surrounding habitat can become trapped within the polysaccharide layer, which can be cemented together by the calcium carbonate to grow thin laminations of limestone
Limestone is a type of carbonate rock, carbonate sedimentary rock which is the main source of the material Lime (material), lime. It is composed mostly of the minerals calcite and aragonite, which are different Polymorphism (materials science) ...
. These laminations can accrete over time, resulting in the banded pattern common to stromatolites. The domal morphology of biological stromatolites is the result of the vertical growth necessary for the continued infiltration of sunlight to the organisms for photosynthesis. Layered spherical growth structures termed oncolites are similar to stromatolites and are also known from the fossil record. Thrombolites are poorly laminated or non-laminated clotted structures formed by cyanobacteria, common in the fossil record and in modern sediments.[ There is evidence that thrombolites form in preference to stromatolites when ]foraminifera
Foraminifera ( ; Latin for "hole bearers"; informally called "forams") are unicellular organism, single-celled organisms, members of a phylum or class (biology), class of Rhizarian protists characterized by streaming granular Ectoplasm (cell bio ...
are part of the biological community.
The Zebra River Canyon area of the Kubis platform in the deeply dissected Zaris Mountains of southwestern Namibia
Namibia, officially the Republic of Namibia, is a country on the west coast of Southern Africa. Its borders include the Atlantic Ocean to the west, Angola and Zambia to the north, Botswana to the east and South Africa to the south; in the no ...
provides a well-exposed example of the thrombolite-stromatolite-metazoan reefs that developed during the Proterozoic period, the stromatolites here being better developed in updip locations under conditions of higher current velocities and greater sediment influx.
Modern occurrence
Formation
Time lapse photography of modern microbial mat formation in a laboratory setting gives some revealing clues to the behavior of cyanobacteria in stromatolites. Biddanda ''et al.'' (2015) found that cyanobacteria exposed to localized beams of light moved towards the light, or expressed phototaxis, and increased their photosynthetic
Photosynthesis ( ) is a Biological system, system of biological processes by which Photoautotrophism, photosynthetic organisms, such as most plants, algae, and cyanobacteria, convert light energy, typically from sunlight, into the chemical ener ...
yield, which is necessary for survival. In a novel experiment, the scientists projected a school logo onto a petri dish containing the organisms, which accreted beneath the lighted region, forming the logo in bacteria. The authors speculate that such motility allows the cyanobacteria to seek light sources to support the colony.
In both light and dark conditions, the cyanobacteria form clumps that then expand outwards, with individual members remaining connected to the colony via long tendrils. In harsh environments where mechanical forces may tear apart the microbial mats, these substructures may provide evolutionary benefit to the colony, affording it at least some measure of shelter and protection.
Lichen stromatolites are a proposed mechanism of formation of some kinds of layered rock structure that are formed above water, where rock meets air, by repeated colonization of the rock by endolithic lichens.[Lichen Stromatolites: Criterion for Subaerial Exposure and a Mechanism for the Formation of Laminar Calcretes (Caliche), Colin F. Klappa, Journal of Sedimentary Petrology, Vol. 49 (1979) No. 2. (June), Pages 387–400]
[Paleobotany: The Biology and Evolution of Fossil Plants, Edith L. Taylor, Thomas N. Taylor, Michael Krings, pag]
Saline locations
Modern stromatolites are mostly found in hypersaline lakes and marine lagoons where high saline levels prevent animal grazing. One such location where excellent modern specimens can be observed is Hamelin Pool Marine Nature Reserve, Shark Bay in Western Australia
Western Australia (WA) is the westernmost state of Australia. It is bounded by the Indian Ocean to the north and west, the Southern Ocean to the south, the Northern Territory to the north-east, and South Australia to the south-east. Western Aust ...
. In 2010, a fifth type of chlorophyll
Chlorophyll is any of several related green pigments found in cyanobacteria and in the chloroplasts of algae and plants. Its name is derived from the Greek words (, "pale green") and (, "leaf"). Chlorophyll allows plants to absorb energy ...
, namely chlorophyll f, was discovered by Min Chen from stromatolites in Shark Bay. '' Halococcus hamelinensis'', a halophilic
A halophile (from the Greek word for 'salt-loving') is an extremophile that thrives in high salt concentrations. In chemical terms, halophile refers to a Lewis acidic species that has some ability to extract halides from other chemical species.
...
archaeon, occurs in living stromatolites in Shark Bay where it is exposed to extreme conditions of UV radiation, salinity
Salinity () is the saltiness or amount of salt (chemistry), salt dissolved in a body of water, called saline water (see also soil salinity). It is usually measured in g/L or g/kg (grams of salt per liter/kilogram of water; the latter is dimensio ...
and desiccation
Desiccation is the state of extreme dryness, or the process of extreme drying. A desiccant is a hygroscopic (attracts and holds water) substance that induces or sustains such a state in its local vicinity in a moderately sealed container. The ...
.[Leuko S, Neilan BA, Burns BP, Walter MR, Rothschild LJ. Molecular assessment of UVC radiation-induced DNA damage repair in the stromatolitic halophilic archaeon, Halococcus hamelinensis. J Photochem Photobiol B. 2011 Feb 7;102(2):140-5. doi: 10.1016/j.jphotobiol.2010.10.002. Epub 2010 Oct 23. PMID: 21074452] ''H. hamelinesis'' possesses genes that encode enzymes employed in the repair of UV induced damages in DNA
Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
by the processes of nucleotide excision repair and photoreactivation.
Other locations include Pampa del Tamarugal National Reserve in Chile; Lagoa Salgada, Rio Grande do Norte, Brazil, where modern stromatolites can be observed as both bioherms (domal type) and beds; in the Puna de Atacama of the Andes; and near Sheybarah Island in Saudi Arabia
Saudi Arabia, officially the Kingdom of Saudi Arabia (KSA), is a country in West Asia. Located in the centre of the Middle East, it covers the bulk of the Arabian Peninsula and has a land area of about , making it the List of Asian countries ...
.
Inland stromatolites can be found in saline waters in Cuatro Ciénegas Basin, a unique ecosystem in the Mexican desert. Alchichica Lake in Puebla
Puebla, officially the Free and Sovereign State of Puebla, is one of the 31 states that, along with Mexico City, comprise the Federal Entities of Mexico. It is divided into 217 municipalities and its capital is Puebla City. Part of east-centr ...
, Mexico has two distinct morphologic generations of stromatolites: columnar-dome like structures, rich in aragonite
Aragonite is a carbonate mineral and one of the three most common naturally occurring crystal forms of calcium carbonate (), the others being calcite and vaterite. It is formed by biological and physical processes, including precipitation fr ...
, forming near the shore line, dated back to 1,100 years before present (ybp) and spongy-cauliflower like thrombolytic structures that dominate the lake from top to the bottom, mainly composed of hydromagnesite
Hydromagnesite is a hydrated magnesium carbonate mineral with the formula .
It generally occurs associated with the weathering products of magnesium containing minerals such as serpentine group, serpentine or brucite. It occurs as incrustations a ...
, huntite, calcite
Calcite is a Carbonate minerals, carbonate mineral and the most stable Polymorphism (materials science), polymorph of calcium carbonate (CaCO3). It is a very common mineral, particularly as a component of limestone. Calcite defines hardness 3 on ...
and dated back to 2,800 ybp. The only open marine environment where modern stromatolites are known to prosper is the Exuma
Exuma is a district of the Bahamas, district of The Bahamas, consisting of over 365 islands and Cay, cays.
The largest of the islands is Great Exuma, which is 37 mi (60 km) in length and joined to another island, Little Exuma, by a small bridge ...
Cays in the Bahamas.
Freshwater locations
Laguna de Bacalar in Mexico's southern Yucatán Peninsula
The Yucatán Peninsula ( , ; ) is a large peninsula in southeast Mexico and adjacent portions of Belize and Guatemala. The peninsula extends towards the northeast, separating the Gulf of Mexico to the north and west of the peninsula from the C ...
has an extensive formation of living giant microbialites (that is, stromatolites or thrombolites). The microbialite bed is over long with a vertical rise of several meters in some areas. These may be the largest sized living freshwater microbialites, or any organism, on Earth.
A 1.5 km stretch of reef-forming stromatolites (primarily of the genus '' Scytonema'') occurs in Chetumal Bay in Belize
Belize is a country on the north-eastern coast of Central America. It is bordered by Mexico to the north, the Caribbean Sea to the east, and Guatemala to the west and south. It also shares a maritime boundary with Honduras to the southeast. P ...
, just south of the mouth of the Rio Hondo and the Mexican border. Large microbialite towers up to 40 m high were discovered in the largest soda lake on Earth, Lake Van
Lake Van (; ; ) is the largest lake in Turkey. It lies in the Eastern Anatolia Region of Turkey in the provinces of Van Province, Van and Bitlis Province, Bitlis, in the Armenian highlands. It is a Salt lake, saline Soda lake, soda lake, receiv ...
in eastern Turkey. They are composed of aragonite
Aragonite is a carbonate mineral and one of the three most common naturally occurring crystal forms of calcium carbonate (), the others being calcite and vaterite. It is formed by biological and physical processes, including precipitation fr ...
and grow by precipitation of calcite
Calcite is a Carbonate minerals, carbonate mineral and the most stable Polymorphism (materials science), polymorph of calcium carbonate (CaCO3). It is a very common mineral, particularly as a component of limestone. Calcite defines hardness 3 on ...
from sub-lacustrine karst-water. Freshwater stromatolites are found in Lake Salda in southern Turkey. The waters are rich in magnesium
Magnesium is a chemical element; it has Symbol (chemistry), symbol Mg and atomic number 12. It is a shiny gray metal having a low density, low melting point and high chemical reactivity. Like the other alkaline earth metals (group 2 ...
and the stromatolite structures are made of hydromagnesite
Hydromagnesite is a hydrated magnesium carbonate mineral with the formula .
It generally occurs associated with the weathering products of magnesium containing minerals such as serpentine group, serpentine or brucite. It occurs as incrustations a ...
.
Two instances of freshwater stromatolites are found in Canada, at Pavilion Lake and Kelly Lake in British Columbia
British Columbia is the westernmost Provinces and territories of Canada, province of Canada. Situated in the Pacific Northwest between the Pacific Ocean and the Rocky Mountains, the province has a diverse geography, with rugged landscapes that ...
. Pavilion Lake has the largest known freshwater stromatolites, and NASA
The National Aeronautics and Space Administration (NASA ) is an independent agencies of the United States government, independent agency of the federal government of the United States, US federal government responsible for the United States ...
has conducted xenobiology research there, called the " Pavilion Lake Research Project." The goal of the project is to better understand what conditions would likely harbor life on other planets.
Microbialites have been discovered in an open pit pond at an abandoned asbestos mine near Clinton Creek, Yukon
Yukon () is a Provinces and territories of Canada, territory of Canada, bordering British Columbia to the south, the Northwest Territories to the east, the Beaufort Sea to the north, and the U.S. state of Alaska to the west. It is Canada’s we ...
,
Canada. These microbialites are extremely young and presumably began forming soon after the mine closed in 1978. The combination of a low sedimentation rate, high calcification rate, and low microbial growth rate appears to result in the formation of these microbialites. Microbialites at an historic mine site demonstrates that an anthropogenically constructed environment can foster microbial carbonate formation. This has implications for creating artificial environments for building modern microbialites including stromatolites.
A very rare type of non-lake dwelling stromatolite lives in the Nettle Cave at Jenolan Caves, NSW, Australia. The cyanobacteria live on the surface of the limestone and are sustained by the calcium-rich dripping water, which allows them to grow toward the two open ends of the cave which provide light.
Stromatolites composed of calcite have been found in both the Blue Lake in the dormant volcano, Mount Gambier
Mount Gambier is the second most populated city in South Australia, with a population of 25,591 as of the 2021 census. The city is located on the slopes of Mount Gambier (volcano), Mount Gambier, a volcano in the south east of the state, about ...
and at least eight cenote lakes including the Little Blue Lake in the Lower South-East of South Australia.
See also
* Banded iron formation
Banded iron formations (BIFs; also called banded ironstone formations) are distinctive units of sedimentary rock consisting of alternating layers of iron oxides and iron-poor chert. They can be up to several hundred meters in thickness and e ...
* Cotham Marble
* Gunflint Range
* Laguna Negra, Catamarca
* Microbially induced sedimentary structure
* Ojos de Mar
* Thrombolites
References
Further reading
*
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*
*
External links
*
*
*
Stromatolite photo gallery
a teaching set from Ohio State University
{{DEFAULTSORT:Stromatolite
Trace fossils
Cyanobacteria
Sedimentary rocks