Selenobacteria
   HOME

TheInfoList



OR:

The Negativicutes are a
class Class, Classes, or The Class may refer to: Common uses not otherwise categorized * Class (biology), a taxonomic rank * Class (knowledge representation), a collection of individuals or objects * Class (philosophy), an analytical concept used d ...
of
bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ...
in the
phylum In biology, a phylum (; : phyla) is a level of classification, or taxonomic rank, that is below Kingdom (biology), kingdom and above Class (biology), class. Traditionally, in botany the term division (taxonomy), division has been used instead ...
Bacillota The Bacillota (synonym Firmicutes) are a phylum of bacteria, most of which have Gram-positive cell wall structure. They have round cells, called cocci (singular coccus), or rod-like forms (bacillus). A few Bacillota, such as '' Megasphaera'', ...
, whose members have a peculiar cell wall with a
lipopolysaccharide Lipopolysaccharide (LPS), now more commonly known as endotoxin, is a collective term for components of the outermost membrane of the cell envelope of gram-negative bacteria, such as '' E. coli'' and ''Salmonella'' with a common structural archit ...
outer membrane which stains
gram-negative Gram-negative bacteria are bacteria that, unlike gram-positive bacteria, do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. Their defining characteristic is that their cell envelope consists ...
, unlike most other members of the
Bacillota The Bacillota (synonym Firmicutes) are a phylum of bacteria, most of which have Gram-positive cell wall structure. They have round cells, called cocci (singular coccus), or rod-like forms (bacillus). A few Bacillota, such as '' Megasphaera'', ...
. Although several neighbouring ''
Clostridia The Clostridia are a highly polyphyletic class of Bacillota, including '' Clostridium'' and other similar genera. They are distinguished from the Bacilli by lacking aerobic respiration. They are obligate anaerobes and oxygen is toxic to them ...
'' species (firmicute bacteria) also stain gram-negative, the proteins responsible for the unusual diderm structure of the ''Negativicutes'' may have actually been laterally acquired from
Pseudomonadota Pseudomonadota (synonym "Proteobacteria") is a major phylum of gram-negative bacteria. Currently, they are considered the predominant phylum within the domain of bacteria. They are naturally found as pathogenic and free-living (non- parasitic) ...
(formerly Proteobacteria). Additional research is required to confirm the origin of the diderm cell envelope in the Negativicutes. Most members of this class are
obligate anaerobe Obligate anaerobes are microorganisms killed by normal Atmosphere of Earth, atmospheric concentrations of oxygen (20.95% O2). Oxygen tolerance varies between species, with some species capable of surviving in up to 8% oxygen, while others lose vi ...
s, and occur in habitats such as rivers, lakes, and the intestines of vertebrates. They range from spherical forms, such as ''Megasphaera'' and '' Veillonella'', to curved rods, as typified by the
selenomonad Members of the genus ''Selenomonas'' (motile crescent-shaped bacteria in general) are referred to trivially as selenomonads. The genus ''Selenomonas'' constitutes a group of motile crescent-shaped bacteria and includes species living in the gast ...
s. ''
Selenomonas Members of the genus ''Selenomonas'' (motile crescent-shaped bacteria in general) are referred to trivially as selenomonads. The genus ''Selenomonas'' constitutes a group of motile crescent-shaped bacteria and includes species living in the gast ...
'' has a characteristic crescent shape, with flagella inserted on the concave side, while ''Sporomusa'' is similar, but nonmotile. Their names refer to this distinctive morphology: ''
selene In ancient Greek mythology and Ancient Greek religion, religion, Selene (; , meaning "Moon")''A Greek–English Lexicon's.v. σελήνη is the goddess and personification of the Moon. Also known as Mene (), she is traditionally the daughter ...
'' means moon, and ''musa'' means
banana A banana is an elongated, edible fruit – botanically a berry – produced by several kinds of large treelike herbaceous flowering plants in the genus '' Musa''. In some countries, cooking bananas are called plantains, distinguishing the ...
.


Taxonomy

The class currently consists of 32 validly named genera across three orders and four families. The orders Veillonellales and Acidaminococcales each contain a single family,
Veillonellaceae The Veillonellaceae are a family of the Clostridia, formerly known as Acidaminococcaceae. bacterium, Bacteria in this family are grouped together mainly based on genetic studies, which place them among the Bacillota. Supporting this placement, ...
and
Acidaminococcaceae The Negativicutes are a class of bacteria in the phylum Bacillota, whose members have a peculiar cell wall with a lipopolysaccharide outer membrane which stains gram-negative, unlike most other members of the Bacillota. Although several neighbour ...
, respectively, while the order
Selenomonadales The Selenomonadales are an order of bacteria within the class Negativicutes; unlike most other members of Bacillota, they are Gram-negative. The phylogeny of this order was initially determined by 16S rRNA comparisons. More recently, molecular ...
contains two families, Selenomonadaceae and Sporomusaceae.


Molecular signatures

Historically, the Negativicutes consisted of a single order, the Selenomonadales, and two families, Veillonellaceae and Acidaminococcaceae based on 16S rRNA gene sequence similarity.Ludwig W, Schleifer K-H, Whitman, WB (2009) Revised road map to the phylum Firmicutes. In: Bergey’s Manual of Systematic Bacteriology, vol. 3, 2nd edn. pp. 1–13. Eds P. De Vos, G. M. Garrity, D. Jones, N. R. Krieg, W. Ludwig, F. A. Rainey, K. H. Schleifer & W. B. Whitman Springer-: New York. However, these groupings did not include several members within the Negativicutes that branched outside of the two families. The current taxonomic view is inclusive of these members who have been validly assigned to the families Selenomonadaceae and Sporomusaceae within the emended Selenomonadales order. Molecular markers in the form of
conserved signature indels Conserved signature inserts and deletions (CSIs) in protein sequences provide an important category of molecular markers for understanding phylogenetic relationships. CSIs, brought about by rare genetic changes, provide useful phylogenetic markers ...
(CSIs) and proteins (CSPs) justify the present taxonomic divisions. These molecular markers are found at each taxonomic rank, and their distribution is in agreement with the observed phylogenetic branching. Many works have implicated that the Negativicutes should be reclassified as an order within the class
Clostridia The Clostridia are a highly polyphyletic class of Bacillota, including '' Clostridium'' and other similar genera. They are distinguished from the Bacilli by lacking aerobic respiration. They are obligate anaerobes and oxygen is toxic to them ...
, based on close phylogenetic branching, and the observation that the spore-forming members of the Negativicutes share similar sporulation genes as the Clostridia, and that both stain gram-negative. However, the heterogeneity of members within the Negativicutes, as well as the distribution of molecular signatures, supports the view that the Negativicutes are in fact an independent class within the Bacillota, with Clostridia as their closest phylogenetic neighbours.Merchandin H, Jumas-Bilak E (2014) The family Veillonellaceae. In: The Prokaryotes, vol. 7, 4th edn. pp. 433–453. Eds E. Rosenberg, E. DeLong, S. Lory, E. Stackebrandt & F. Thompson Springer-: Berlin, Heidelberg. Additionally, several CSIs and CSPs have been found to be uniquely shared among all Negativicutes, while no CSIs have been found to be shared by both Negativicutes and
Clostridia The Clostridia are a highly polyphyletic class of Bacillota, including '' Clostridium'' and other similar genera. They are distinguished from the Bacilli by lacking aerobic respiration. They are obligate anaerobes and oxygen is toxic to them ...
.


Phylogeny

The currently accepted taxonomy is based on the
List of Prokaryotic names with Standing in Nomenclature List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclatu ...
(LPSN) and
National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is lo ...
(NCBI).


See also

*
List of bacterial orders This article lists the orders of the Bacteria. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) and the phylogeny is based on 16 ...
*
List of bacteria genera This article lists the genera of the bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, ...


References

{{Taxonbar, from=Q623144 Bacteria classes