Phaeophyscia Limbata
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''Phaeophyscia'' is a
genus Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
of
lichen A lichen ( , ) is a hybrid colony (biology), colony of algae or cyanobacteria living symbiotically among hypha, filaments of multiple fungus species, along with yeasts and bacteria embedded in the cortex or "skin", in a mutualism (biology), m ...
-forming
fungi A fungus (: fungi , , , or ; or funguses) is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and mold (fungus), molds, as well as the more familiar mushrooms. These organisms are classified as one ...
in the family
Physciaceae The Physciaceae are a family of mostly lichen-forming fungi belonging to the class Lecanoromycetes in the division Ascomycota. A 2016 estimate placed 19 genera and 601 species in the family. Description The Physiaceae family includes various ...
. These lichens typically appear as leaf-like (
foliose A foliose lichen is a lichen with flat, leaf-like , which are generally not firmly bonded to the substrate on which it grows. It is one of the three most common lichen growth forms, growth forms of lichens. It typically has distinct upper and lo ...
) growths that spread across tree bark, rocks, or other surfaces, usually in well-lit, nutrient-rich environments. Their structure consists of short or long that range in colour from pale grey to dark brown, becoming dark green when wet, and they often have dark undersides with root-like attachments (
rhizine In lichens, rhizines are multicellular root-like structures arising mainly from the lower surface. A lichen with rhizines is termed rhizinate, while a lichen lacking rhizines is termed erhizinate. Rhizines serve only to anchor the lichen to their s ...
s). The genus is distinguished from its relatives by its unique chemical composition and reproductive features, lacking a substance called
atranorin Atranorin is a chemical substance produced by some species of lichen. It is a secondary metabolite belonging to a group of compounds known as depsides. Atranorin has analgesic, anti-inflammatory, antibacterial, antifungal, cytotoxic, antioxidant, ...
and producing
ellipsoid An ellipsoid is a surface that can be obtained from a sphere by deforming it by means of directional Scaling (geometry), scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a Surface (mathemat ...
al spores. While some species reproduce through specialised
propagule In biology, a propagule is any material that functions in propagating an organism to the next stage in its life cycle, such as by dispersal. The propagule is usually distinct in form from the parent organism. Propagules are produced by organisms ...
s called
soredia Soredia are common reproduction, reproductive structures of lichens. Lichens asexual reproduction, reproduce asexually by employing simple fragmentation and production of soredia and isidia. Soredia are powdery propagules composed of fungus, fung ...
or
isidia An isidium (plural: isidia) is a tiny, wart- or finger-like outgrowth on the thallus surface of certain lichen species. It is one of two principal types of vegetative reproduction, vegetative reproductive structures in lichens, the other being ...
, others form small cup-like fruiting bodies (
apothecia An ascocarp, or ascoma (: ascomata), is the fruiting body ( sporocarp) of an ascomycete phylum fungus. It consists of very tightly interwoven hyphae and millions of embedded asci, each of which typically contains four to eight ascospores. As ...
) on their surface for reproduction. There are over 50 known species of ''Phaeophyscia'' worldwide.


Taxonomy

''Phaeophyscia'' was
circumscribed In geometry, a circumscribed circle for a set of points is a circle passing through each of them. Such a circle is said to ''circumscribe'' the points or a polygon formed from them; such a polygon is said to be ''inscribed'' in the circle. * Circum ...
by the Swedish lichenologist Roland Moberg in 1977, separating it from the older genus ''
Physcia ''Physcia'' is a genus of lichen-forming fungi in the family Physciaceae. The widely distributed genus contains about 80 species. The genus is cosmopolitan distribution, cosmopolitan, and has been extensively studied in various regions in the p ...
''. The key distinction of this new genus lay in its chemical composition: unlike ''Physcia'', ''Phaeophyscia'' lacks the substance
atranorin Atranorin is a chemical substance produced by some species of lichen. It is a secondary metabolite belonging to a group of compounds known as depsides. Atranorin has analgesic, anti-inflammatory, antibacterial, antifungal, cytotoxic, antioxidant, ...
in its outer protective layer () and produces
ellipsoid An ellipsoid is a surface that can be obtained from a sphere by deforming it by means of directional Scaling (geometry), scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a Surface (mathemat ...
al conidia (asexual reproductive cells). The genus can be distinguished from its close relative '' Physciopsis'' by its growth pattern, as ''Phaeophyscia'' grows more loosely on its compared to ''Physciopsis''s tightly pressed form. It also differs from the genus ''
Physconia ''Physconia'' is a genus of lichen-forming fungi in the family Physciaceae. It comprises 13 species. The genus was established in 1965 by the lichenologist Josef Poelt and is characterized by leaf-like growth forms with typically less than 3 ...
'' in its spore characteristics. Moberg designated '' Phaeophyscia orbicularis'' as the
type species In International_Code_of_Zoological_Nomenclature, zoological nomenclature, a type species (''species typica'') is the species name with which the name of a genus or subgenus is considered to be permanently taxonomically associated, i.e., the spe ...
for this new genus, establishing it as the standard reference for the group's characteristics.


Description

Genus ''Phaeophyscia'' encompasses a variety of lichen species, characterised by their leaf-like (foliose) structure that often extends in , which can either be short or elongate and tend to lie flat against the , resembling a loosely shrubby form in some instances. These lobes are typically less than 1.5 mm wide and have a range of colours from pale grey or greenish grey to dark brown, becoming dark green when moistened. The surface of these lichens is , not covered in a powdery coating (), and usually lacks spots () or fringe-like projections () along the edges. The underside is typically whitish or more commonly black, with matching, simple roots (
rhizine In lichens, rhizines are multicellular root-like structures arising mainly from the lower surface. A lichen with rhizines is termed rhizinate, while a lichen lacking rhizines is termed erhizinate. Rhizines serve only to anchor the lichen to their s ...
s) that may extend beyond the lobe tips, giving an appearance similar to cilia. Internally, the ''Phaeophyscia'' lichen has a brown upper layer (), with colourless internal layers (
hymenium The hymenium is the tissue layer on the hymenophore of a fungal fruiting body where the cells develop into basidia or asci, which produce spores. In some species all of the cells of the hymenium develop into basidia or asci, while in oth ...
and ). The supporting filamentous structures () consist of slender, often branching
paraphyses Paraphyses are erect sterile filament-like support structures occurring among the reproductive apparatuses of fungi, ferns, bryophytes and some thallophytes. The singular form of the word is paraphysis. In certain fungi, they are part of the f ...
with club-shaped tips that are pale brown with a thin dark brown top. The spore-producing structures ( asci) are approximately cylindrical to club-shaped, containing eight spores of the ''
Lecanora ''Lecanora'' is a genus of lichen commonly called rim lichens.Field Guide to California Lichens, Stephen Sharnoff, Yale University Press, 2014, Lichens in the genus '' Squamarina'' are also called rim lichens. Members of the genus have roughly c ...
''-type. The spores themselves are brown, thick-walled, and divided by a single cross-wall (1-
septate In biology, a septum (Latin for ''something that encloses''; septa) is a wall, dividing a cavity or structure into smaller ones. A cavity or structure divided in this way may be referred to as septate. Examples Human anatomy * Interatrial se ...
), resembling those found in the genus ''
Physcia ''Physcia'' is a genus of lichen-forming fungi in the family Physciaceae. The widely distributed genus contains about 80 species. The genus is cosmopolitan distribution, cosmopolitan, and has been extensively studied in various regions in the p ...
''.


Chemistry

In terms of chemical composition, ''Phaeophyscia'' lichens do not react to a solution of
potassium hydroxide Potassium hydroxide is an inorganic compound with the formula K OH, and is commonly called caustic potash. Along with sodium hydroxide (NaOH), KOH is a prototypical strong base. It has many industrial and niche applications, most of which utili ...
(K–) on the cortex and medulla, indicating the absence of
atranorin Atranorin is a chemical substance produced by some species of lichen. It is a secondary metabolite belonging to a group of compounds known as depsides. Atranorin has analgesic, anti-inflammatory, antibacterial, antifungal, cytotoxic, antioxidant, ...
. However, some species contain yellow to orange-red
pigments A pigment is a powder used to add or alter color or change visual appearance. Pigments are completely or nearly solubility, insoluble and reactivity (chemistry), chemically unreactive in water or another medium; in contrast, dyes are colored sub ...
that turn purple with potassium hydroxide (K+), known as skyrin, or
terpenoids The terpenoids, also known as isoprenoids, are a class of naturally occurring organic chemicals derived from the 5-carbon compound isoprene and its derivatives called terpenes, diterpenes, etc. While sometimes used interchangeably with "terpenes" ...
.


Reproduction

Some ''Phaeophyscia'' species develop
soredia Soredia are common reproduction, reproductive structures of lichens. Lichens asexual reproduction, reproduce asexually by employing simple fragmentation and production of soredia and isidia. Soredia are powdery propagules composed of fungus, fung ...
or
isidia An isidium (plural: isidia) is a tiny, wart- or finger-like outgrowth on the thallus surface of certain lichen species. It is one of two principal types of vegetative reproduction, vegetative reproductive structures in lichens, the other being ...
, specialised structures (
propagule In biology, a propagule is any material that functions in propagating an organism to the next stage in its life cycle, such as by dispersal. The propagule is usually distinct in form from the parent organism. Propagules are produced by organisms ...
s) used for
asexual reproduction Asexual reproduction is a type of reproduction that does not involve the fusion of gametes or change in the number of chromosomes. The offspring that arise by asexual reproduction from either unicellular or multicellular organisms inherit the f ...
. The upper and lower layers of the
thallus Thallus (: thalli), from Latinized Greek (), meaning "a green shoot" or "twig", is the vegetative tissue of some organisms in diverse groups such as algae, fungi, some liverworts, lichens, and the Myxogastria. A thallus usually names the entir ...
(cortex) are composed of closely packed cells (), with the algal partner () being –that is, from the
green alga The green algae (: green alga) are a group of chlorophyll-containing autotrophic eukaryotes consisting of the phylum Prasinodermophyta and its unnamed sister group that contains the Chlorophyta and Charophyta/ Streptophyta. The land plants ( ...
l genus ''
Trebouxia ''Trebouxia'' is a unicellular green alga. It is a photosynthetic organism that can exist in almost all habitats found in polar, tropical, and temperate regions.Erokhina, L. G., Shatilovich, A. V., Kaminskaya, O. P., & Gilichinskii, D. A. (2004 ...
''. The reproductive organs (
ascomata An ascocarp, or ascoma (: ascomata), is the fruiting body (sporocarp (fungi), sporocarp) of an ascomycete phylum fungus. It consists of very tightly interwoven hyphae and millions of embedded ascus, asci, each of which typically contains four to ...
) are cup-shaped structures (
apothecia An ascocarp, or ascoma (: ascomata), is the fruiting body ( sporocarp) of an ascomycete phylum fungus. It consists of very tightly interwoven hyphae and millions of embedded asci, each of which typically contains four to eight ascospores. As ...
) found on the lichen's surface, usually encircled by rhizines at their base, with a brown to black that lacks a powdery covering. The rim surrounding the reproductive disc () is smooth and occasionally lobed. Asexual reproductive structures (
conidiomata Conidiomata (singular: Conidioma) are blister-like fruiting structures produced by a specific type of fungus called a coelomycete. They are formed as a means of dispersing asexual spores call conidia, which they accomplish by creating the blister- ...
) are in the form of
pycnidia A pycnidium (plural pycnidia) is an asexual fruiting body produced by mitosporic fungi, for instance in the order Sphaeropsidales ( Deuteromycota, Coelomycetes) or order Pleosporales (Ascomycota, Dothideomycetes). It is often spherical or inve ...
, embedded within the lichen and mostly colourless, except for a brown area around the opening (
ostiole An ''ostiole'' is a small hole or opening through which algae or fungi release their mature spores. The word is a diminutive of wikt:ostium, "ostium", "opening". The term is also used in higher plants, for example to denote the opening of the ...
). The asexual spores (
conidia A conidium ( ; : conidia), sometimes termed an asexual chlamydospore or chlamydoconidium (: chlamydoconidia), is an asexual, non- motile spore of a fungus. The word ''conidium'' comes from the Ancient Greek word for dust, ('). They are also ...
) are
ellipsoid An ellipsoid is a surface that can be obtained from a sphere by deforming it by means of directional Scaling (geometry), scalings, or more generally, of an affine transformation. An ellipsoid is a quadric surface;  that is, a Surface (mathemat ...
al in shape.


Habitat, distribution, and ecology

Ecologically, ''Phaeophyscia'' lichens favour nutrient-rich or enriched substrates in well-lit environments. They are distinguished from the closely related ''
Hyperphyscia ''Hyperphyscia'' is a genus of lichen-forming fungi in the family Physciaceae. These lichens form tightly attached, leaf-like crusts that spread outward in rosettes, with individual radiating in shallow, overlapping tiers that are seldom mor ...
'' by their ellipsoidal, not thread-like, conidia, while ''
Physcia ''Physcia'' is a genus of lichen-forming fungi in the family Physciaceae. The widely distributed genus contains about 80 species. The genus is cosmopolitan distribution, cosmopolitan, and has been extensively studied in various regions in the p ...
'' species have rod-shaped () conidia. Seventeen species of ''Phaeophyscia'' have been reported from South Korea.


Uses

Because of its ability to
bioaccumulate Bioaccumulation is the gradual accumulation of substances, such as pesticides or other chemicals, in an organism. Bioaccumulation occurs when an organism absorbs a substance faster than it can be lost or eliminated by catabolism and excretion. Th ...
heavy metals following exposure to pollution, ''Phaeophyscia hispidula'' has been used in several air quality
biomonitor A bioindicator is any species (an indicator species) or group of species whose function, population, or status can reveal the qualitative status of the environment. The most common indicator species are animals. For example, copepods and other sma ...
ing studies in India, where it is abundant and widespread.


Species

,
Species Fungorum ''Index Fungorum'' is an international project to index all formal names (Binomial nomenclature, scientific names) in the fungus Kingdom (biology), kingdom. As of 2015, the project is based at the Royal Botanic Gardens, Kew, one of three partn ...
(in the
Catalogue of Life The Catalogue of Life (CoL) is an online database that provides an index of known species of animals, plants, fungi, and microorganisms. It was created in 2001 as a partnership between the global Species 2000 and the American Integrated Taxono ...
) accept 26 species of ''Phaeophyscia'', although many more have been described in the genus. *'' Phaeophyscia adiastola'' *'' Phaeophyscia cernohorskyi'' *'' Phaeophyscia ciliata'' *'' Phaeophyscia confusa'' *'' Phaeophyscia constipata'' *'' Phaeophyscia crocea'' *'' Phaeophyscia culbersonii'' *'' Phaeophyscia dagestanica'' Russian Caucasus *'' Phaeophyscia decolor'' *'' Phaeophyscia denigrata'' *'' Phaeophyscia echinata'' *'' Phaeophyscia endoaurantiaca'' *'' Phaeophyscia endococcina'' *'' Phaeophyscia endococcinodes'' *'' Phaeophyscia endophoenicea'' *'' Phaeophyscia erythrocardia'' *'' Phaeophyscia esslingeri'' – East Asia *'' Phaeophyscia exornatula'' *'' Phaeophyscia fumosa'' *'' Phaeophyscia hirsuta'' *'' Phaeophyscia hirtella'' *'' Phaeophyscia hirtuosa'' *'' Phaeophyscia hispidula'' *'' Phaeophyscia hunana'' – China *'' Phaeophyscia imbricata'' *'' Phaeophyscia insignis'' *''
Phaeophyscia kaghanensis ''Phaeophyscia'' is a genus of lichen-forming fungi in the family Physciaceae. These lichens typically appear as leaf-like (foliose lichen, foliose) growths that spread across tree bark, rocks, or other surfaces, usually in well-lit, nutrient-ric ...
'' – Pakistan *'' Phaeophyscia kairamoi'' *'' Phaeophyscia kashmirensis'' *'' Phaeophyscia laciniata'' *'' Phaeophyscia latifolia'' *'' Phaeophyscia leana'' *'' Phaeophyscia limbata'' *'' Phaeophyscia lygaea'' *'' Phaeophyscia melanchra'' *'' Phaeophyscia microspora'' *'' Phaeophyscia nadvornikii'' *'' Phaeophyscia nashii'' *'' Phaeophyscia nepalensis'' *'' Phaeophyscia nigricans'' *'' Phaeophyscia opuntiella'' *'' Phaeophyscia orbicularis'' *'' Phaeophyscia primaria'' *'' Phaeophyscia pusilloides'' *'' Phaeophyscia pyrrhophora'' *'' Phaeophyscia rubropulchra'' *'' Phaeophyscia saxatilis'' *'' Phaeophyscia sciastra'' *'' Phaeophyscia sonorae'' *'' Phaeophyscia spinellosa'' *'' Phaeophyscia squarrosa'' *'' Phaeophyscia stiriaca'' *'' Phaeophyscia strigosa'' *'' Phaeophyscia sulphurascens'' *'' Phaeophyscia ticinensis'' *'' Phaeophyscia trichophora''


References

{{Taxonbar, from=Q10626003 Caliciales Lichen genera Caliciales genera Taxa described in 1977 Taxa named by Roland Moberg