The following is a list of
software packages and
applications for
biocybernetics
Biocybernetics is the application of cybernetics to biological science disciplines such as neurology and multicellular systems. Biocybernetics plays a major role in systems biology, seeking to integrate different levels of information to understan ...
research
Research is creative and systematic work undertaken to increase the stock of knowledge. It involves the collection, organization, and analysis of evidence to increase understanding of a topic, characterized by a particular attentiveness to ...
.
Data formats and specifications
*
Systems Biology Markup Language
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. It is a free and open standard with widespread software support and a community of us ...
(SBML)
* Biological Pathway Exchange (
BioPAX)
*
CellML
*
Minimum Information About a Simulation Experiment (MIASE)
*
Minimum information required in the annotation of models (MIRIAM)
*
Systems Biology Ontology (SBO)
*
Systems Biology Graphical Notation
The Systems Biology Graphical Notation (SBGN) is a standard graphical representation intended to foster the efficient storage, exchange and reuse of information about signaling pathways, metabolic networks, and gene regulatory networks amongst co ...
(SBGN)
Libraries for software development
* CyberUnits, a class library for computer simulations in life sciences
Software products
*
SimThyr – Simulation system for thyroid homeostasis
See also
*
List of sequence alignment software
*
List of open-source healthcare software
*
List of open-source bioinformatics software
*
List of proprietary bioinformatics software
*
List of freeware health software
*
List of molecular graphics systems
*
List of systems biology modeling software
*
Comparison of software for molecular mechanics modeling
This is a list of computer programs that are predominantly used for molecular mechanics calculations.
See also
*Car–Parrinello molecular dynamics
*Comparison of force-field implementations
*Comparison of nucleic acid simulation software
* ...
*
BioLinux
Other collections
PhysioToolkit Software Index PhysioNet's software collection
References
{{DEFAULTSORT:Biomedical cybernetics software
Biocybernetics
Biomedical cybernetics
Biomedical cybernetics
Systems biology