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Systems Biology Markup Language
The Systems Biology Markup Language (SBML) is a representation format, based on XML, for communicating and storing computational models of biological processes. It is a free and open standard with widespread software support and a community of users and developers. SBML can represent many different classes of biological phenomena, including metabolic networks, cell signaling pathways, Gene regulatory networks, regulatory networks, infectious diseases, and many others. It has been proposed as a standard for representing computational models in systems biology today. History Late in the year 1999 through early 2000, with funding from the Japan Science and Technology Corporation (JST), Hiroaki Kitano and John C. Doyle assembled a small team of researchers to work on developing better software infrastructure for computer model, computational modeling in systems biology. Hamid Bolouri was the leader of the development team, which consisted of Andrew Finney, Herbert Sauro, and Michae ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Markup Language
A markup language is a Encoding, text-encoding system which specifies the structure and formatting of a document and potentially the relationships among its parts. Markup can control the display of a document or enrich its content to facilitate automated processing. A markup language is a set of rules governing what markup information may be included in a document and how it is combined with the content of the document in a way to facilitate use by humans and computer programs. The idea and terminology evolved from the "marking up" of paper manuscripts (e.g., with revision instructions by editors), traditionally written with a red pen or blue pencil (editing), blue pencil on authors' manuscripts. Older markup languages, which typically focus on typography and presentation, include Troff, TeX, and LaTeX. Scribe (markup language), Scribe and most modern markup languages, such as Extensible Markup Language, XML, identify document components (for example headings, paragraphs, and tabl ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Lingua Franca
A lingua franca (; ; for plurals see ), also known as a bridge language, common language, trade language, auxiliary language, link language or language of wider communication (LWC), is a Natural language, language systematically used to make communication possible between groups of people who do not share a First language, native language or dialect, particularly when it is a third language that is distinct from both of the speakers' native languages. Linguae francae have developed around the world throughout human history, sometimes for commercial reasons (so-called "trade languages" facilitated trade), but also for cultural, religious, diplomatic and administrative convenience, and as a means of exchanging information between scientists and other scholars of different nationalities. The term is taken from the medieval Mediterranean Lingua Franca, a Romance languages, Romance-based pidgin language used especially by traders in the Mediterranean Basin from the 11th to the 19th c ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Mathematica
Wolfram (previously known as Mathematica and Wolfram Mathematica) is a software system with built-in libraries for several areas of technical computing that allows machine learning, statistics, symbolic computation, data manipulation, network analysis, time series analysis, NLP, optimization, plotting functions and various types of data, implementation of algorithms, creation of user interfaces, and interfacing with programs written in other programming languages. It was conceived by Stephen Wolfram, and is developed by Wolfram Research of Champaign, Illinois. The Wolfram Language is the programming language used in ''Mathematica''. Mathematica 1.0 was released on June 23, 1988 in Champaign, Illinois and Santa Clara, California. Mathematica's Wolfram Language is fundamentally based on Lisp; for example, the Mathematica command Most is identically equal to the Lisp command butlast. There is a substantial literature on the development of computer algebra systems (CAS). __TOC_ ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Python (programming Language)
Python is a high-level programming language, high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation. Python is type system#DYNAMIC, dynamically type-checked and garbage collection (computer science), garbage-collected. It supports multiple programming paradigms, including structured programming, structured (particularly procedural programming, procedural), object-oriented and functional programming. It is often described as a "batteries included" language due to its comprehensive standard library. Guido van Rossum began working on Python in the late 1980s as a successor to the ABC (programming language), ABC programming language, and he first released it in 1991 as Python 0.9.0. Python 2.0 was released in 2000. Python 3.0, released in 2008, was a major revision not completely backward-compatible with earlier versions. Python 2.7.18, released in 2020, was the last release of ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Java (programming Language)
Java is a High-level programming language, high-level, General-purpose programming language, general-purpose, Memory safety, memory-safe, object-oriented programming, object-oriented programming language. It is intended to let programmers ''write once, run anywhere'' (Write once, run anywhere, WORA), meaning that compiler, compiled Java code can run on all platforms that support Java without the need to recompile. Java applications are typically compiled to Java bytecode, bytecode that can run on any Java virtual machine (JVM) regardless of the underlying computer architecture. The syntax (programming languages), syntax of Java is similar to C (programming language), C and C++, but has fewer low-level programming language, low-level facilities than either of them. The Java runtime provides dynamic capabilities (such as Reflective programming, reflection and runtime code modification) that are typically not available in traditional compiled languages. Java gained popularity sh ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
C Programming Language
C (''pronounced'' '' – like the letter c'') is a general-purpose programming language. It was created in the 1970s by Dennis Ritchie and remains very widely used and influential. By design, C's features cleanly reflect the capabilities of the targeted Central processing unit, CPUs. It has found lasting use in operating systems code (especially in Kernel (operating system), kernels), device drivers, and protocol stacks, but its use in application software has been decreasing. C is commonly used on computer architectures that range from the largest supercomputers to the smallest microcontrollers and embedded systems. A successor to the programming language B (programming language), B, C was originally developed at Bell Labs by Ritchie between 1972 and 1973 to construct utilities running on Unix. It was applied to re-implementing the kernel of the Unix operating system. During the 1980s, C gradually gained popularity. It has become one of the most widely used programming langu ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Open-source
Open source is source code that is made freely available for possible modification and redistribution. Products include permission to use and view the source code, design documents, or content of the product. The open source model is a decentralized software development model that encourages open collaboration. A main principle of open source software development is peer production, with products such as source code, blueprints, and documentation freely available to the public. The open source movement in software began as a response to the limitations of proprietary code. The model is used for projects such as in open source appropriate technology, and open source drug discovery. Open source promotes universal access via an open-source or free license to a product's design or blueprint, and universal redistribution of that design or blueprint. Before the phrase ''open source'' became widely adopted, developers and producers used a variety of other terms, such as ''free software'' ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bison
A bison (: bison) is a large bovine in the genus ''Bison'' (from Greek, meaning 'wild ox') within the tribe Bovini. Two extant taxon, extant and numerous extinction, extinct species are recognised. Of the two surviving species, the American bison, ''B. bison'', found only in North America, is the more numerous. Although colloquially referred to as a buffalo in the United States and Canada, it is only distantly related to the true buffalo. The North American species is composed of two subspecies, the Plains bison, ''B. b. bison'', and the generally more northern wood bison, ''B. b. athabascae''. A third subspecies, the eastern bison (''B. b. pennsylvanicus'') is no longer considered a valid taxon, being a junior synonym of ''B. b. bison''. Historical references to "woods bison" or "wood bison" from the Eastern United States refer to this synonym animal (and to their eastern woodland habitat), not to ''B. b. athabascae'', wh ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
LibSBML
LibSBML is an open-source software library that provides an application programming interface (API) for the SBML (Systems Biology Markup Language ) format. The libSBML library can be embedded in a software application or used in a web servlet (such as one that might be served by Apache Tomcat) as part of the application or servlet's implementation of support for reading, writing, and manipulating SBML documents and data streams. The core of libSBML is written in ISO standard C++; the library provides API for many programming languages via interfaces generated with the help of SWIG. The libSBML library is free software released under the terms of the GNU Lesser General Public License (LGPL) as published by the Free Software Foundation; either version 2.1 of the License, or any later version. LibSBML was developed thanks to funding from many agencies, particularly the National Institute of General Medical Sciences (NIGMS, USA) as well as the Defense Advanced Research Project ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
JWS Online
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JWS may refer to: * Jackson–Weiss syndrome * Java Web Start * Java Web Services Development Pack * John Wesley Shipp, American actor * John Woolman School, in Nevada City, California * ''Journal of Web Semantics'' * JSON Web Signature * ''Just Women's Sports'' * Whitfords railway station, in Western Australia See also * Jehovah's Witnesses Jehovah's Witnesses is a Christian denomination that is an outgrowth of the Bible Student movement founded by Charles Taze Russell in the nineteenth century. The denomination is nontrinitarian, millenarian, and restorationist. Russell co-fou ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
BioModels
BioModels is a free and open-source repository for storing, exchanging and retrieving quantitative models of biological interest created in 2006. All the models in the curated section of BioModels Database have been described in peer-reviewed scientific literature. The models stored in BioModels' curated branch are compliant with MIRIAM, the standard of model curation and annotation. The models have been simulated by curators to check that when run in simulations, they provide the same results as described in the publication. Model components are annotated, so the users can conveniently identify each model element and retrieve further information from other resources. Modellers can submit the models in SBML and CellML. Models can subsequently be downloaded in SBMLVCML SciLab, Octave, BioPAX and RDF/XML. The reaction networks of models are presented in some graphic formats, such as PNG, SVG and graphic Java applet, in which some networks were presented by following Systems Biolo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
