Kalkitoxin, a
toxin derived from the
cyanobacterium ''
Lyngbya majuscula
''Lyngbya majuscula'' is a species of filamentous cyanobacteria in the genus '' Lyngbya''. It is named after the Dane Hans Christian Lyngbye.
As a result of recent genetic analyses, several new genera were erected from the genus ''Lyngbya' ...
'', induces
NMDA receptor
The ''N''-methyl-D-aspartate receptor (also known as the NMDA receptor or NMDAR), is a glutamate receptor and ion channel found in neurons. The NMDA receptor is one of three types of ionotropic glutamate receptors, the other two being AMPA rece ...
mediated neuronal necrosis, blocks
voltage-dependent sodium channels
Sodium channels are integral membrane proteins that form ion channels, conducting sodium ions (Na+) through a cell's membrane. They belong to the superfamily of cation channels and can be classified according to the trigger that opens the channel ...
, and induces cellular hypoxia by inhibiting the
electron transport chain
An electron transport chain (ETC) is a series of protein complexes and other molecules that transfer electrons from electron donors to electron acceptors via redox reactions (both reduction and oxidation occurring simultaneously) and couples th ...
(ETC) complex 1.
Natural sources
Kalkitoxin is an
ichthyotoxin, derived from the
cyanobacterium ''
Lyngbya majuscula
''Lyngbya majuscula'' is a species of filamentous cyanobacteria in the genus '' Lyngbya''. It is named after the Dane Hans Christian Lyngbye.
As a result of recent genetic analyses, several new genera were erected from the genus ''Lyngbya' ...
''
which covers sections of the coral reef.
It typically forms mini-blooms
and produces several metabolites, such as kalkitoxin,
curacin-A and
antillatoxin
Antillatoxin (ATX) is a potent lipopeptide neurotoxin produced by the marine cyanobacterium ''Lyngbya majuscula''. ATX activates voltage-gated sodium channels, which can cause cell depolarisation, NMDA-receptor overactivity, excess calcium influx ...
.
Kalkitoxin has been found and purified near the coasts of Curaçao
and Puerto Rico.
Structure and reactivity
Kalkitoxin is a
lipopeptide toxin
with a molecular weight of 366.604Da. Its chemical formula is C
21H
38N
2OS.
The structure contains two double bonds, a 2,4-disubstituted thiazoline ring system, and an additional carbonyl-group.
These four groups each provide a degree of unsaturation, which causes kalkitoxin to have four
degrees of unsaturation.
The structure contains 5
chiral centers, one of which is due to a substituent of the thiazoline ring, and the other four are due to
methine groups along the
aliphatic carbon chain,
which are tertiary carbon atoms bearing three single carbon bonds and one hydrogen. The four methyl groups (each at a methine chiral center), the structure's overall stereochemistry, and the N-methyl group all contribute to the toxicity of kalkitoxin.
Structure determination
The
structure
A structure is an arrangement and organization of interrelated elements in a material object or system, or the object or system so organized. Material structures include man-made objects such as buildings and machines and natural objects such as ...
of kalkitoxin was first determined by characterizing six partial structures which were subsequently connected to yield the total structure.
This investigation was largely carried out through various
NMR experiments. Structure (a) is a
sec-butyl group, indicated by characteristic
deshielding
In nuclear magnetic resonance (NMR) spectroscopy, the chemical shift is the resonant frequency of an atomic nucleus relative to a standard in a magnetic field. Often the position and number of chemical shifts are diagnostic of the structure of ...
of its central
methine group due to the adjacent
carbonyl. Structure (b) contains this carbonyl group, and an adjacent tertiary methylated nitrogen atom, constituting a
tertiary amide group. Since this is a tertiary amide, it exists in a cis/trans mixture, which underlies the two conformations of kalkitoxin. Structure (c) is a string of two
methylene groups, then a methine group bearing a high-field methyl group. The next two groups identified (d,e) are identical and opposing strings of CH2-CH-CH3, however the left grouping's methylene
proton
A proton is a stable subatomic particle, symbol , H+, or 1H+ with a positive electric charge of +1 ''e'' elementary charge. Its mass is slightly less than that of a neutron and 1,836 times the mass of an electron (the proton–electron mass ...
s experience greater
deshielding
In nuclear magnetic resonance (NMR) spectroscopy, the chemical shift is the resonant frequency of an atomic nucleus relative to a standard in a magnetic field. Often the position and number of chemical shifts are diagnostic of the structure of ...
, due to their proximity to the adjacent
imine. Deshielding is an effect of a nearby
electronegative atom withdrawing
electron density from a given atom nucleus, eliciting an increased
chemical shift as measured by NMR.
The final partial structure consists of a
thiazoline ring with a terminal
alkene substituent, as determined by
electron ionization
Electron ionization (EI, formerly known as electron impact ionization and electron bombardment ionization) is an ionization method in which energetic electrons interact with solid or gas phase atoms or molecules to produce ions. EI was one of th ...
mass spectrometry
Mass spectrometry (MS) is an analytical technique that is used to measure the mass-to-charge ratio of ions. The results are presented as a ''mass spectrum'', a plot of intensity as a function of the mass-to-charge ratio. Mass spectrometry is use ...
(EI-MS) and
13C NMR.
The chemical shifts of ring carbons adjacent to the sulfur and nitrogen
heteroatoms were compared to
13C NMR data from model compounds. This allowed for the determination of these heteroatoms' locations in the ring, and subsequently the existence of the thiazoline ring itself.
With these partial structures established, their connectivity was evaluated via
HMBC spectroscopy,
a 2D NMR technique which allows for the determination of heteronuclear
J-coupling values for nonadjacent carbons and protons. This allows for the spatial relation of specific carbon and hydrogen atoms within a structure to be determined.
Stereochemistry
Kalkitoxin has five
chiral centers, one of which is the ring carbon to which the terminal
alkene is coordinated, with the remaining four occurring at tertiary carbon atoms along the
aliphatic chain originating from the
imine nitrogen. The total stereochemistry of natural (+)-kalkitoxin is 3R,7R,8S,10S,2′R.
For this determination,
3J
CH values by a variation of the HSQMBC pulse technique, a type of
HMBC spectroscopy, and
3J
HH values by
exclusive correlation spectroscopy
Exclusive correlation spectroscopy (ECOSY) is an NMR correlation experiment introduced by O. W. Sørensen, Christian Griesinger, Richard R. Ernst and coworkers for the accurate measurement of small J-coupling
In nuclear chemistry and nuclear phy ...
(E.COSY). These methods use NMR to evaluate the spin-spin coupling constants which directly relate to the
dihedral angle of the atoms being analyzed, allowing for the determination of chirality. This was used to determine the stereochemistry of chiral centers at C7, C8, and C10. Because C7 and C8 are adjacent stereocenters, these techniques allowed for immediate determination of their relative stereochemistry, however C10 is separated from C8 by C9, which carries two
diastereotopic In stereochemistry, topicity is the stereochemical relationship between substituents and the structure to which they are attached. Depending on the relationship, such groups can be ''heterotopic'', ''homotopic'', ''enantiotopic'', or ''diastereotopi ...
protons. This allows for the determination of relative stereochemistry of C8 and C10 to the C9 protons through
3J coupling">J-coupling \ 3J coupling values, so as to relate the relative stereochemistry of C8 to C10. These methods yielded a relative stereochemistry of 7R, 8S, 10S for the aliphatic chain stereocenters.
Stereochemistry at C3 was determined by Marfey's analysis, wherein the compound was
ozonized and subsequently
hydrolyzed
Hydrolysis (; ) is any chemical reaction in which a molecule of water breaks one or more chemical bonds. The term is used broadly for substitution, elimination, and solvation reactions in which water is the nucleophile.
Biological hydrolysis ...
to obtain
cysteic acid
Cysteic acid also known as 3-sulfo--alanine is the organic compound with the formula HO3SCH2CH(NH2)CO2H. It is often referred to as cysteate, which near neutral pH takes the form −O3SCH2CH(NH3+)CO2−.
It is an amino acid generated by oxidation ...
from the thiazoline ring and attached terminal alkene. Marfey's analysis indicated this
amino acid derivative was L-cysteic acid, indicating R absolute stereochemistry at C3.
The absolute stereochemistry of the total molecule was determined by synthesizing the possible configurations of the already determined relative chiralities, and comparison of these to natural Kalkitoxin via
13C NMR
shift
Shift may refer to:
Art, entertainment, and media Gaming
* ''Shift'' (series), a 2008 online video game series by Armor Games
* '' Need for Speed: Shift'', a 2009 racing video game
** '' Shift 2: Unleashed'', its 2011 sequel
Literature
* ''Sh ...
differences, revealing the natural (+)-kalkitoxin stereochemistry to be 3R,7R,8S,10S,2′R.
Structure-activity relationship
The
structure-activity relationship (SAR) of a molecule is the connection between the structural
moieties within the compound, and how those specific structures directly contribute to the extent and character of the molecule's
biological activity
In pharmacology, biological activity or pharmacological activity describes the beneficial or adverse effects of a drug on living matter. When a drug is a complex chemical mixture, this activity is exerted by the substance's active ingredient or ...
. Kalkitoxin exhibits potent
cytotoxicity
Cytotoxicity is the quality of being toxic to cells. Examples of toxic agents are an immune cell or some types of venom, e.g. from the puff adder (''Bitis arietans'') or brown recluse spider (''Loxosceles reclusa'').
Cell physiology
Treating cells ...
which relies on the complete
thiazoline ring for its action.
Kalkitoxin analogs lacking the complete thiazoline ring exhibit on the order of 1000-fold decreased toxicity to solid tumor cell lines.
This indicates the thiazoline ring structure is a crucial component of kalkitoxin's mechanism of cytotoxicity. The necessity of the stereochemistry exhibited in natural (+)-kalkitoxin decreases moving towards the chiral centers in the core of the molecule, while the more terminal chiral centers and amide methyl group are increasingly crucial for toxicity.
In a study which assayed for the toxicity of kalkitoxin and various analogs against brine shrimp, the analogs which experienced the least significant loss of potency were
epimers at either C8 or C10.
This indicates that C8 and C10 chiralities in natural (+)-kalkitoxin are the least critical for toxic biological activity. It is apparent that C10 chirality is less critical than C8, because the epimer of (+)-kalkitoxin at C10 is more potent than the epimer at C8.
Furthermore, the removal of the C10 methyl group has a smaller impact on potency than does
epimerization of C7, supporting the trend of decreased SAR correlation at core chiral centers on the aliphatic chain.
Epimerization at C3, the attachment point of the terminal alkene to the thiazoline ring, further decreases potency of kalkitoxin, in agreement with the thiazoline ring and overall conformation of the leftmost segment of the molecule being critical for bioactivity. Finally, replacement of the tertiary amide with a secondary amide eliminates any observable toxicity, so this structure is crucial in the mechanism of kalkitoxin toxicity.
Synthesis
Wu ''et al.'' synthesis
This effort was the first total synthesis of (+)-kalkitoxin, and served the purpose of deducing the specific
stereochemistry
Stereochemistry, a subdiscipline of chemistry, involves the study of the relative spatial arrangement of atoms that form the structure of molecules and their manipulation. The study of stereochemistry focuses on the relationships between stereois ...
of natural kalkitoxin.
This synthesis began from an
alcohol
Alcohol most commonly refers to:
* Alcohol (chemistry), an organic compound in which a hydroxyl group is bound to a carbon atom
* Alcohol (drug), an intoxicant found in alcoholic drinks
Alcohol may also refer to:
Chemicals
* Ethanol, one of sev ...
bearing the proper
chirality
Chirality is a property of asymmetry important in several branches of science. The word ''chirality'' is derived from the Greek (''kheir''), "hand", a familiar chiral object.
An object or a system is ''chiral'' if it is distinguishable from ...
at C8 and C10 found in (+)-kalkitoxin, and carried a dimethylphenylsiloxy (DPSO) group positioned beta to C8, and a terminal
alkene positioned alpha to C10.
Hydroboration of this alkene gives the resulting alcohol, which is converted to an
azide
In chemistry, azide is a linear, polyatomic anion with the formula and structure . It is the conjugate base of hydrazoic acid . Organic azides are organic compounds with the formula , containing the azide functional group. The dominant applic ...
, which is the position at which (R)-2-methylbutyric acid is coupled to produce the
sec-butyl group and
amide group
In organic chemistry, an amide, also known as an organic amide or a carboxamide, is a compound with the general formula , where R, R', and R″ represent organic groups or hydrogen atoms. The amide group is called a peptide bond when it is p ...
. The amide is subsequently
methylated, finalizing the tertiary amide which has been shown to be so crucial for kalkitoxin toxicity.
O-Desilylation and
oxidation of the resulting alcohol produce an acceptor for a
Horner-Wadsworth-Emmons reaction, wherein a
carbonyl and an alpha-
methylated phosphonate react to produce an alkene. In this case, a beta-keto phosphonate bearing an (R)-
phenylglycine-derived
auxiliary group was ligated to the molecule. This group is lost in asymmetric
conjugate addition of an (R)-amino alcohol, which, through two cyclodehydration steps using Wipf's oxazoline-thiazoline interconversion protocol, produces the thiazoline ring.
White ''et al.'' synthesis
The second total synthesis of (+)-kalkitoxin was only 16 steps and gave a 3% overall
yield.
A major aspect by which this differs from the first total synthesis of (+)-kalkitoxin is that rather than using a
Horner-Wadsworth-Emmons reaction to ligate a
phosphonate carrying the 4-phenyl-2-oxazolidinone, an
organocopper conjugate addition reaction was used instead.
This was done specifically by connecting the organocopper species to a 4-phenyl-2-oxazolidinone carrying an (S)-N-trans-
crotonyl group through a 1,4-
nucleophilic addition
In organic chemistry, a nucleophilic addition reaction is an addition reaction where a chemical compound with an electrophilic double or triple bond reacts with a nucleophile, such that the double or triple bond is broken. Nucleophilic additions di ...
to the α,β-unsaturation of the crotonyl group. This method is advantageous because it allows for
stereoselectivity of the resulting 1,3-dimethyl configuration during the larger sequential introduction of the methyl substituents at the C7, C8 and C10 chiral centers.
Another point of diversion between these two syntheses is the number of carbons separating the keto-auxiliary group from the chiral center at C7. This group was separated by one carbon from C7 in the first total synthesis, so the keto-auxiliary moiety could be converted to a
carboxylic acid
In organic chemistry, a carboxylic acid is an organic acid that contains a carboxyl group () attached to an R-group. The general formula of a carboxylic acid is or , with R referring to the alkyl, alkenyl, aryl, or other group. Carboxylic ...
, in anticipation of addition of the amino alcohol immediately thereafter.
In this synthesis, this keto-auxiliary group is directly adjacent to C7, necessitating a one carbon homologation, before construction of the thiazoline ring. This was achieved through reductive
bond cleavage
In chemistry, bond cleavage, or bond fission, is the splitting of chemical bonds. This can be generally referred to as dissociation when a molecule is cleaved into two or more fragments.
In general, there are two classifications for bond cleavag ...
of the auxiliary group to a primary alcohol and oxidation to the corresponding aldehyde,
Wittig reaction using an ylide carrying a methoxy group to produce an
enol ether,
hydrolysis to the
aldehyde and finally
oxidation to produce the carboxylic acid.
Balieu ''et al.'' synthesis
This synthesis differentiates itself in that it takes an "
assembly line" synthesis approach, as opposed to the conventional iterative synthetic approach taken in previous syntheses which normally necessitate functional-group interconversions and repetitive
purifications for
aliphatic chain extensions, such as the one found in kalkitoxin. This novel approach is achieved through the use of reagent-controlled chain extension of a boronic ester,
which relies on a spontaneous 1,2-migration after formation of an intermediate compound incorporating a newly added lithiated
benzoate ester building block.
This allows for control of
chirality
Chirality is a property of asymmetry important in several branches of science. The word ''chirality'' is derived from the Greek (''kheir''), "hand", a familiar chiral object.
An object or a system is ''chiral'' if it is distinguishable from ...
at each addition by selecting the chirality of each benzoate ester added. Furthermore, this avoids repetitive interconversion and purification steps normally required for repeat chain extensions, which increases yield and efficiency and decreases labor. This synthesis capitalized on this technique by producing the core aliphatic chain as a single large fragment, and coupled this fragment to the chiral sec-butyl group bearing a carboxylic acid.
The opposing amino
thioether fragment was synthesized separately, and then adjoined and subsequently
cyclized following the procedure devised by White et al.
In total, this synthesis requires only 7 steps if the initial homologation series is counted as one step.
Targets
Kalkitoxin may activate the
NMDA receptor
The ''N''-methyl-D-aspartate receptor (also known as the NMDA receptor or NMDAR), is a glutamate receptor and ion channel found in neurons. The NMDA receptor is one of three types of ionotropic glutamate receptors, the other two being AMPA rece ...
.
It also blocks the
voltage-gated sodium channel and the
electron transport chain
An electron transport chain (ETC) is a series of protein complexes and other molecules that transfer electrons from electron donors to electron acceptors via redox reactions (both reduction and oxidation occurring simultaneously) and couples th ...
(ETC) complex 1.
It remains unknown how exactly kalkitoxin binds to the voltage-gated sodium channel. Neurotoxin sit 1 and 2 have been ruled out as possible binding sites, whereas neurotoxin site 7 is suggested as binding site for kalkitoxin.
This is probable, because there is inhibition of the channel by kalkitoxin when deltamethrin, which has positive allosteric effects, is present.
This could be because molecular determinants for binding are similar in kalkitoxin and deltamethrin.
Mode of action

Kalkitoxin induces delayed neuronal necrosis in cerebellar
granule cells of the rat.
This neuronal necrosis proved to be
NMDA-receptor mediated.
These receptors are normally activated by
glutamate
Glutamic acid (symbol Glu or E; the ionic form is known as glutamate) is an α-amino acid that is used by almost all living beings in the biosynthesis of proteins. It is a non-essential nutrient for humans, meaning that the human body can syn ...
and other excitotoxic compounds and can induce neuronal necrosis.
It is not yet known if the toxin induces necrosis directly or via the release of excitotoxic compounds.
Secondly, kalkitoxin blocks
voltage-gated sodium channels, thereby inhibiting Ca
2+ release that normally occurs when the voltage-gated sodium channel is activated, in a concentration dependent matter.
Calcium release has been shown to induce
lactate dehydrogenase (LDH) production.
The amount of LDH is a measure for neuronal cell death.
In the presence of kalkitoxin there is also a concentration-dependent inhibition of neuronal cell death and LDH production (9). The mechanism behind this inhibition is still unknown.
Thirdly, kalkitoxin blocks the
electron transport chain
An electron transport chain (ETC) is a series of protein complexes and other molecules that transfer electrons from electron donors to electron acceptors via redox reactions (both reduction and oxidation occurring simultaneously) and couples th ...
(ETC) complex 1,
one of the protein complexes involved in mitochondrial respiration.
By blocking the ETC complex 1, kalkitoxin potently inhibits
hypoxia-inducible factor-1 (HIF-1) activation.
HIF-1 is a transcription factor, which enhances the expression of genes that increase oxygen availability, as well as genes that decrease oxygen consumption.
Inhibition of HIF-1, which is one of the main effects of kalkitoxin, thus induces cellular hypoxia.
Toxicity
Kalkitoxin is ichthyotoxic to goldfish (''
Carassius auratus'',
LC50: 700nM) and to aquatic crustacean brine shrimp (''
Artemia salina'', LC
50: 150-180nM
). Kalkitoxin also has been shown to have delayed neurotoxic effects on cerebellar granule cells of the rat (LC
50: 3,86nM).
Therapeutic research
Many efforts to discover cancer therapeutic drugs focus on the screening of novel biomolecules produced and isolated from various plants and animals.
These isolated molecules are screened via
in-vitro assays to measure their effects in standardized paradigms designed to select for the desired therapeutic effect. Kalkitoxin was originally isolated from
Lyngbya majuscula
''Lyngbya majuscula'' is a species of filamentous cyanobacteria in the genus '' Lyngbya''. It is named after the Dane Hans Christian Lyngbye.
As a result of recent genetic analyses, several new genera were erected from the genus ''Lyngbya' ...
as an effort to collect new molecules for testing as antitumor or antifungal agents.
One of the first tests of kalkitoxin tumor-selective
cytotoxicity
Cytotoxicity is the quality of being toxic to cells. Examples of toxic agents are an immune cell or some types of venom, e.g. from the puff adder (''Bitis arietans'') or brown recluse spider (''Loxosceles reclusa'').
Cell physiology
Treating cells ...
used an in-vitro assay to test solid tumor selectivity of kalkitoxin's previously demonstrated cytotoxicity against the human colon cell line HCT-116.
The assay measured the extent of differential cytotoxicity of kalkitoxin and various analogous structures by observing differential cytotoxicity against solid tumor cells, and either non-solid tumor cells such as
leukemia cells or normal cells. This test yielded promising results, as kalkitoxin exhibited preferential cytotoxicity for the solid tumor cell test conditions (Colon 38, and HCT-116 cells) as compared to the non-solid tumor and normal cell conditions.
Kalkitoxin exerts this cytotoxic effect through inhibition of the
mitochondria
A mitochondrion (; ) is an organelle found in the Cell (biology), cells of most Eukaryotes, such as animals, plants and Fungus, fungi. Mitochondria have a double lipid bilayer, membrane structure and use aerobic respiration to generate adenosi ...
l
electron transport chain complex 1.
This causes the inhibition of
hypoxia
Hypoxia means a lower than normal level of oxygen, and may refer to:
Reduced or insufficient oxygen
* Hypoxia (environmental), abnormally low oxygen content of the specific environment
* Hypoxia (medical), abnormally low level of oxygen in the tis ...
-induced
HIF-1 activation, which is crucial in solid tumor cancers because hypoxia drives
tumor angiogenesis, leading to worsening disease stages and increased resistance to treatment. HIF-1 is a
transcription factor which induces expression of genes promoting oxygen availability and decreasing oxygen consumption, the effect of which counteracts cellular
hypoxia
Hypoxia means a lower than normal level of oxygen, and may refer to:
Reduced or insufficient oxygen
* Hypoxia (environmental), abnormally low oxygen content of the specific environment
* Hypoxia (medical), abnormally low level of oxygen in the tis ...
.
[Semenza, G.L. Oxygen sensing, hypoxia-inducible factors, and disease pathophysiology. Annu. Rev. Pathol. 2014, 9, 47–71.] Therefore, kalkitoxin's HIF-1 inhibitory ability positions it as a potentially promising molecule to counteract the progression of some solid tumor cancers by blocking the tumor proliferative response to hypoxia. The caveat to kalkitoxin's promising anti-proliferative properties is its neurotoxic effects. At concentrations comparable to those required for tumor-selective cytotoxicity, kalkitoxin induces cell death when applied to rat
cerebellar granule neurons (CGN) in culture.
Kalkitoxin acts as an
N-methyl-D-aspartate (NMDA)
receptor agonist
An agonist is a chemical that activates a receptor to produce a biological response. Receptors are cellular proteins whose activation causes the cell to modify what it is currently doing. In contrast, an antagonist blocks the action of the ago ...
, and induces cytotoxicity in cultured rat CGNs at delayed time points.
Therefore, this effect must be taken into account when considering kalkitoxin or its chemical derivatives for use as a therapeutic option.
References
{{Neurotoxins
Ion channel toxins
Cyanotoxins
Neurotoxins