''Avian coronavirus'' is a species of virus from the genus ''

Gammacoronavirus ''Gammacoronavirus'' (Gamma-CoV) is one of the four genera ('' Alpha''-, '' Beta-'', ''Gamma-'', and '' Delta-'') of coronaviruses. It is in the subfamily ''Orthocoronavirinae'' of the family ''Coronaviridae''. They are enveloped, positive-sen ...

'' that infects

bird Birds are a group of warm-blooded vertebrates constituting the class Aves (), characterised by feathers, toothless beaked jaws, the laying of hard-shelled eggs, a high metabolic rate, a four-chambered heart, and a strong yet lightweig ...

s; since 2018, all gammacoronaviruses which infect birds have been classified as this single species. The strain of avian coronavirus previously known as infectious bronchitis virus (IBV) is the only coronavirus that infects chickens. It causes

avian infectious bronchitis Avian infectious bronchitis (IB) is an acute and highly contagious respiratory disease of chickens. The disease is caused by avian infectious bronchitis virus (IBV), a coronavirus (Coronaviridae, Orthocoronavirinae, genus ''Gammacoronavirus'', sub ...

, a highly infectious disease that affects the

respiratory tract The respiratory tract is the subdivision of the respiratory system involved with the process of respiration in mammals. The respiratory tract is lined with respiratory epithelium as respiratory mucosa. Air is breathed in through the nose to ...

gut Gut or guts may refer to: Anatomy * Abdomen or belly, the region of a vertebrate between the chest and pelvis * Abdominal obesity or "a gut", a large deposit of belly fat * Gastrointestinal tract or gut, the system of digestive organs * Ins ...

kidney The kidneys are two reddish-brown bean-shaped organs found in vertebrates. They are located on the left and right in the retroperitoneal space, and in adult humans are about in length. They receive blood from the paired renal arteries; bloo ...

and

reproductive system The reproductive system of an organism, also known as the genital system, is the biological system made up of all the anatomical organs involved in sexual reproduction. Many non-living substances such as fluids, hormones, and pheromones are al ...

. IBV affects the performance of both meat-producing and egg-producing chickens and is responsible for substantial economic loss within the poultry industry. The strain of avian coronavirus previously classified as Turkey coronavirus causes gastrointestinal disease in turkeys.

Classification

IBV is in the genus ''

'', or group 3, with a non-segmented, positive-sense single-stranded RNA

genome In the fields of molecular biology and genetics, a genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding ...

. It was previously the type species of its genus '' Igacovirus''. When there was only one genus of coronaviruses, the genus ''Coronavirus'', it was the type species of the group of all known coronaviruses.

Recombination

When two strains of coronavirus IBV infect a host they may recombine during genome replication. Recombination appears to contribute to the genetic variation of the IBV

found in nature.

Pathology

Respiratory system

When inhaled, virus will attach to

glycoprotein Glycoproteins are proteins which contain oligosaccharide chains covalently attached to amino acid side-chains. The carbohydrate is attached to the protein in a cotranslational or posttranslational modification. This process is known as g ...

receptors containing

sialic acid Sialic acids are a class of alpha-keto acid sugars with a nine-carbon backbone. The term "sialic acid" (from the Greek for saliva, - ''síalon'') was first introduced by Swedish biochemist Gunnar Blix in 1952. The most common member of this ...

on ciliated epithelial cells of the respiratory epithelium. The respiratory replication will result in loss of ciliary activity, mucus accumulation, necrosis and desquamation, causing respiratory distress, râles and

asphyxia Asphyxia or asphyxiation is a condition of deficient supply of oxygen to the body which arises from abnormal breathing. Asphyxia causes generalized hypoxia, which affects primarily the tissues and organs. There are many circumstances that ca ...

. Local virus replication will result in viremia, spreading the infection into other tissues and organs. Other respiratory diseases of chickens ('' Mycoplasma gallisepticum'', avian infectious laryngotracheitis ('' Gallid alphaherpesvirus 1''), Newcastle disease (avian paramyxovirus 1), ''

Avian metapneumovirus Avian metapneumovirus (aMPV), also known as turkey rhinotracheitis or swollen head syndrome, causes a variety of disease syndromes in birds, depending on the bird species and virus type (A, B, C or D). First detected in 1978 in South Africa, the ...

'' infection may be confused clinically to infectious bronchitis.

Kidney

Through viremia, some nephrotropic strains (most of high virulence) could infect the kidney epithelium in tubules and

nephron The nephron is the minute or microscopic structural and functional unit of the kidney. It is composed of a renal corpuscle and a renal tubule. The renal corpuscle consists of a tuft of capillaries called a glomerulus and a cup-shaped structure ...

, causing kidney failure. At gross examination, kidneys may appear swollen and pale in color and with urates in

ureters The ureters are tubes made of smooth muscle that propel urine from the kidneys to the urinary bladder. In a human adult, the ureters are usually long and around in diameter. The ureter is lined by urothelial cells, a type of transitional e ...

Reproductive system

In hens, the viremic IBV will also reach the

oviduct The oviduct in mammals, is the passageway from an ovary. In human females this is more usually known as the Fallopian tube or uterine tube. The eggs travel along the oviduct. These eggs will either be fertilized by spermatozoa to become a zygote, ...

, causing lesions in the magnum (the egg-white gland) and in the uterus (the egg-shell gland), leading to a sharp decline of egg production, shell-less, fragile or roughened shells eggs (uterus lesion) with watery whites (magnum lesion). Infection of chickens at puberty, during the oviduct development, will impede oviduct formation and destroy future laying capacity, resulting in "false layers". However, other diseases affecting layer chickens could lead to that condition.

Vaccines

There are both

attenuated vaccine An attenuated vaccine (or a live attenuated vaccine, LAV) is a vaccine created by reducing the virulence of a pathogen, but still keeping it viable (or "live"). Attenuation takes an infectious agent and alters it so that it becomes harmless or l ...

s and

inactivated vaccine An inactivated vaccine (or killed vaccine) is a vaccine consisting of virus particles, bacteria, or other pathogens that have been grown in culture and then killed to destroy disease-producing capacity. In contrast, live vaccines use pathogens ...

s available. Their effectiveness is diminished by poor cross-protection. The nature of the protective immune response to IBV is poorly understood, but the surface spike protein, the amino-terminal S1 half, is sufficient to induce good protective immunity. Experimental vector IB vaccines and genetically manipulated IBVs—with heterologous spike protein genes—have produced promising results, including in the context of in ovo vaccination.