Hafnia (bacterium)
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''Hafnia'' is a
genus Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In bino ...
of
Gram-negative Gram-negative bacteria are bacteria that, unlike gram-positive bacteria, do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. Their defining characteristic is that their cell envelope consists ...
,
facultatively anaerobic A facultative anaerobic organism is an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation if oxygen is absent. Some examples of facultatively anaerobic bacteria are ''Staphylococcus' ...
,
rod-shaped Bacterial cellular morphologies are the shapes that are characteristic of various types of bacteria and often key to their identification. Their direct examination under a light microscope enables the classification of these bacteria (and archae ...
bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ...
in the family
Hafniaceae The ''Hafniaceae'' are a family (biology), family of Gram-negative bacteria. This family is a member of the order Enterobacterales in the class Gammaproteobacteria of the phylum Pseudomonadota. Genera in this family include the type genus ''Hafni ...
. ''H. alvei'' is a
commensal Commensalism is a long-term biological interaction (symbiosis) in which members of one species gain benefits while those of the other species neither benefit nor are harmed. This is in contrast with mutualism, in which both organisms benefit f ...
of the human gastrointestinal tract and not normally
pathogenic In biology, a pathogen (, "suffering", "passion" and , "producer of"), in the oldest and broadest sense, is any organism or agent that can produce disease. A pathogen may also be referred to as an infectious agent, or simply a germ. The term ...
, but may cause disease in
immunocompromised Immunodeficiency, also known as immunocompromise, is a state in which the immune system's ability to fight infectious diseases and cancer is compromised or entirely absent. Most cases are acquired ("secondary") due to extrinsic factors that affe ...
patients. It is often resistant to multiple antibiotics, including the
aminopenicillin The aminopenicillins are a group of antibiotics in the penicillin family that are structural analogs of ampicillin (which is the 2-amino derivative of benzylpenicillin, hence the name). Like other penicillins and beta-lactam antibiotics, they con ...
s. The name comes from ''Hafnia'', the
Latin Latin ( or ) is a classical language belonging to the Italic languages, Italic branch of the Indo-European languages. Latin was originally spoken by the Latins (Italic tribe), Latins in Latium (now known as Lazio), the lower Tiber area aroun ...
name for
Copenhagen Copenhagen ( ) is the capital and most populous city of Denmark, with a population of 1.4 million in the Urban area of Copenhagen, urban area. The city is situated on the islands of Zealand and Amager, separated from Malmö, Sweden, by the ...
. ''Hafnia alvei'' is used as a lactic ferment by the dairy industry and more recently as a
probiotic Probiotics are live microorganisms that provide health benefits when consumed, generally by improving or restoring the microbiota in the gut. Probiotics are considered generally safe to consume, but may cause bacteria– host interactions ...
included in a dietary supplement product.


History

The genus ''Hafnia'' is one of more than 40 genera that currently comprise the order
Enterobacterales Enterobacterales is an order of Gram-negative bacteria, Gram-negative, non-spore forming, Facultative anaerobic organism, facultatively anaerobic, rod-shaped bacteria with the class Gammaproteobacteria. The type genus of this order is ''Enterob ...
. Although Møller originally described this genus in 1954, the legitimacy of this group was constantly challenged over the next two decades, often being referred to by synonyms such as "''Enterobacter alvei''", "''Enterobacter aerogenes subsp. hafniae''" and "''Enterobacter hafniae''" but it is mostly referenced by its current name, ''Hafnia alvei,'' in the literature. In 1977, a study concluded that at the end of Camembert manufacturing ''Hafnia alvei'' remains as the dominant species. ''Hafnia alvei'' is a psychrotrophic strain, which can develop at low temperatures, meaning that it doesn't stop growing during the storage phase of cheese unlike ''E. coli''. In 1983, ''Enterobacterales'' were discovered in freshly produced Camembert: 51% of the identified ''Enterobacterales'' were ''Hafnia alvei'' strains compared to only 9% of ''
Escherichia coli ''Escherichia coli'' ( )Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. is a gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus '' Escherichia'' that is commonly fo ...
.'' These authors also showed that ''Hafnia alvei'' grew to a high concentration in cheese (up to 107 CFU/g), in both raw milk and pasteurised milk cheeses. A few years later, in 1987, ''Hafnia alvei'' was identified by a Spanish team in raw ewes' milk representing 6.5% of the total ''Enterobacterales'' species present. In 2014, a collaborative study working on cheese ripening, involving the French INRA and an Italian University, identified ''H. alvei'' in raw milk used to make the traditional
caciocavallo () is a type of ('stretched-curd') cheese made out of sheep's or cow's milk. It is produced throughout southern Italy, particularly in the Apennine Mountains and in the Gargano peninsula. Shaped like a teardrop, it is similar in taste to the ...
Pugliese cheese. ''Hafnia alvei'' is also present in fermented foods other than dairy products, it has been identified over the years in traditional meals around the planet. In 1987, American scientists studying ''
Brassicaceae Brassicaceae () or (the older but equally valid) Cruciferae () is a medium-sized and economically important Family (biology), family of flowering plants commonly known as the mustards, the crucifers, or the cabbage family. Most are herbaceous pla ...
'' found ''Hafnia alvei'' while analysing the microflora of fresh harvested collards, they believed the ''Hafnia alvei'' originated from
soil contamination Soil contamination, soil pollution, or land pollution as a part of land degradation is caused by the presence of xenobiotic (human-made) chemicals or other alteration in the natural soil environment. It is typically caused by industrial activit ...
but not necessarily as a pathogen. ''Hafnia'' has also been identified in fermented coffee seeds in Ethiopia and Ohio, USA. American researchers studied the microbiome of the coffee seeds and identified ''Hafnia alvei'' among numerous other strains and species, including 13 species of ''
Enterobacterales Enterobacterales is an order of Gram-negative bacteria, Gram-negative, non-spore forming, Facultative anaerobic organism, facultatively anaerobic, rod-shaped bacteria with the class Gammaproteobacteria. The type genus of this order is ''Enterob ...
''. This study highlighted that the richness of the seeds' microbiome was linked to the fermentation process and the coffee quality. The richest order of bacteria identified was the ''Enterobacterales'' containing ''Hafnia alvei.'' This family is often found in humid and nutrient rich environments similar to coffee processing conditions. Thus, they could play a critical role in the fermentation. ''Hafnia alvei'' has also been identified in commercial
kimchi Kimchi (; ) is a traditional Korean side dish (''banchan'') consisting of salted and fermented vegetables, most often napa cabbage or Korean radish. A wide selection of seasonings are used, including '' gochugaru'' (Korean chili powder), ...
, a traditional Korean meal made with Asian cabbage, radish, spices and salted fermented seafood. Scientists suggest the source of ''Hafnia'' in this case is the fermented seafood. In 2004, Mexican scientists isolated ''Hafnia alvei'' (among other bacteria such as ''
Lactobacillus acidophilus ''Lactobacillus acidophilus'' (Neo-Latin 'acid-loving milk-bacillus') is a rod-shaped, Gram-positive bacteria, Gram-positive, homofermentative, Anaerobic organism, anaerobic microbe first isolated from infant feces in the year 1900. The species ...
'' or ''plantarum'') from
pulque Pulque (; ), occasionally known as octli or agave wine, is an alcoholic beverage made from the fermented sap of the maguey (agave) plant. It is traditional in central Mexico, where it has been produced for millennia. It has the color of milk, ...
a traditional beverage made from fermented Maguey (also known as
agave ''Agave'' (; ; ) is a genus of monocots native to the arid regions of the Americas. The genus is primarily known for its succulent and xerophytic species that typically form large Rosette (botany), rosettes of strong, fleshy leaves. Many plan ...
). And finally, ''Hafnia alvei'' was also isolated from meat products, particularly refrigerated beef due to the presence of ''Hafnia alvei'' on slaughtered cattle. It can be found alongside ''E. coli'' in
chorizo ''Chorizo'' ( , ; ; see #Names, below) is a type of pork sausage originating from the Iberian Peninsula. It is made in many national and regional varieties in several countries on different continents. Some of these varieties are quite differe ...
, a popular semi-dry fermented Spanish sausage. Fermented sausages made in Spain were also reported to contain the ''Hafnia alvei'' strain, responsible for producing histamine that is crucial to the ripening process.


Commensal strain

Most standard microbiology texts list mammals, birds, reptiles, fish, soil, water, sewage, and foods as sources from which hafniae can be recovered. The gastrointestinal tracts of animals, and in particular mammals, appear to be a very common ecologic habitat for ''hafniae''. Paleomicrobiology investigations have identified ''H. alvei'' originating from intestinal mass samples and sediment collected from 12,000-year-old mastodon remains in Michigan and Ohio. In a study of 642 Australian mammals, Gordon and FitzGibbon found that ''H. alvei'' was the third most common enteric species identified, following ''
Escherichia coli ''Escherichia coli'' ( )Wells, J. C. (2000) Longman Pronunciation Dictionary. Harlow ngland Pearson Education Ltd. is a gram-negative, facultative anaerobic, rod-shaped, coliform bacterium of the genus '' Escherichia'' that is commonly fo ...
'' and ''E. cloacae''. The isolation of ''H. alvei'' was significantly associated with recovery from marsupial carnivores and murid rodents. ''Hafniae'' have also been recovered sporadically from the manure samples of pack animals collected from national park trails and from 7% of the grizzly and black bear specimens tested. Among avian species, ''H. alvei'' has been frequently isolated from birds of prey, including falcons, owls, and turkey vultures; even high-altitude alpine accentors that have virtually no contact with humans have had ''Hafnia'' isolated from them, at frequencies ranging from 3% to 16%. Other sources for ''H. alvei'' include reptiles (snakes and skinks), invertebrates, insects, fish, and bats.


Role of ''H. alvei'' in cheese ripening

According to several publications, ''Hafnia alvei'' is present as a dominant species during the ripening of raw milk cheese. ''Hafnia alvei'' is a psychrotrophic bacterium, it originates in raw milk and continues to grow in cheeses such as
Camembert Camembert ( , , ) is a moist, soft, creamy, surface-ripened cow's milk cheese. It was first made in the late 18th century in Camembert, Normandy, in northwest France. It is sometimes compared in look, taste and texture to brie cheese, albe ...
. The multiplication is a key factor in the fermentation process and ripening of cheese. Since 1979, studies of French cheese have led to the identification of correlations between ''Hafnia alvei'' growth and chemical parameters during cheese manufacturing. Several researchers estimated that the level of ''H. alvei'' reaches 107 CFU/g at the end of ripening process and showed that its growth curve is closely linked to an increase in pH. Similarly, Mounier ''et al.'' determined a ''H. alvei'' content of about 109 CFU/g in a model smear cheese (soft cheese). Extensive study of traditional cheeses that have been consumed for years highlight the presence of ''Hafnia alvei'' in dairy products for more than thirty years. In conclusion'','' abundant levels of ''Hafnia alvei'' can be found in raw milk cheese and it plays a large role in cheese aromatisation due to its impact on acidity and capacity to produce free amino-acids. ''Hafnia'' is either intentionally added during the cheesemaking process or it is already present as a constituent of the milk microflora. It contributes to the fermentation process and ripening of cheeses. Metabolic studies revealed that ''H. alvei'' is pivotal to the ripening process and the development of the typical cheese flavour. Because of these properties affecting acidity and flavour, ''H. alvei'' has been used in the manufacture of several cheeses, such as cheddar, gouda and camembert, as well as in Livarot and other raw milk cheese. ''H. alvei'' is also marketed in the EU as a ripening culture for camembert with a strong aroma (Aroma-Prox AF 036, provided by Bioprox SAS, France) or as blend of microorganisms for soft cheese flavour (Choozit Cheese cultures ARO 21-HA LYO 10 D, provided b
Danisco Denmark
). A 2013 study of a cheese model ecosystem highlighted the role of ''Hafnia alvei'' in inhibiting the growth of ''E. coli'' strain O26:H11 without altering pH or lactic acid concentrations. ''Hafnia alvei'' did produce a small amount of biogenic amines such as putrescine and cadaverine but these didn't affect the overall level of volatile aroma compounds. Interest in ''Hafnia alvei's'' roll in cheese making is increasing. A 2007,
ANR ANR may refer to: People * Akkineni Nageswara Rao, Indian actor and producer in Telugu cinema Places * Akkineni Nageswara Rao College, sometimes called ANR College, in Gudivada, Andhra Pradesh, India * Antwerp International Airport (IATA code) E ...
(French National Research Agency) project (GRAMME) are evaluating the benefits and risks of ''Hafnia alvei'' in the production of cheese and studying the potential functions to enlarge its application to other food products.


Culture growth

''Hafnia'' grows in media containing 2% to 5% NaCl, a pH range of 4.9 to 8.25, and thermal gradients of 4 °C to 44 °C; the optimum temperature for growth has been reported as 35 °C. There is general agreement that almost 100% of ''Hafnia'' strains grow on MacConkey, Hektoen enteric, eosin methylene blue, and xylose-lysine-deoxycholate agars, all of which are differential to moderately selective media. On more inhibitory selective media, 25% to 60% of strains fail to grow on Salmonella-Shigella (SS) agar, while 75% to 100% of isolates are inhibited on brilliant green medium. Classic strains of ''H. alvei'' are lactose and sucrose negative and as such appear as nonfermenting colonies on enteric isolation media. On moderately selective agars, they typically appear as large, smooth, convex, translucent colonies of 2 to 3 mm in diameter with an entire edge; some may exhibit an irregular border.


Biology


Lipopolysaccharides

The
immunochemistry Immunochemistry is the study of the chemistry of the immune system. This involves the study of the properties, functions, interactions and production of the chemical components of the immune system. It also include immune responses and determina ...
of ''Hafnia''
lipopolysaccharide Lipopolysaccharide (LPS), now more commonly known as endotoxin, is a collective term for components of the outermost membrane of the cell envelope of gram-negative bacteria, such as '' E. coli'' and ''Salmonella'' with a common structural archit ...
s (LPS) are extremely complicated. All ''H. alvei'' LPS appear to contain glucose, glucosamine, heptose, and 3-deoxyoctulosonic acid. Some LPS also contain other amino sugars or carbohydrates such as mannose, galactose, galactosamine, and mannosamine. The core oligosaccharide structure of some strains consists of an identical hexasaccharide structure composed of two D-glucose residues, three LD-heptose residues, and one 3-deoxyoctulosonic acid residue. There is extensive serologic and immunologic diversity in this genus, and active research continues in this area.


Biotypes

In 1969, Barbe described two biotypes of ''H. alvei'' based upon fermentation of D-arabinose and salicin and on esculin and arbutin hydrolysis. One challenge that microbiologists face is trying to develop biochemical tests that can readily distinguish most strains of DNA group 1 (''H. alvei'' sensu stricto) from DNA group 2 (unnamed ''Hafnia'' species) isolates. These two groups could be distinguished from one another by a series of tests. No single test was completely discriminatory, but motility at 24hr was the best predictor of DNA group (DNA group 1, 9% positive; DNA group 2, 100% positive).


Pathogenicity and antimicrobial susceptibility

There is limited information about the pathogenicity of ''Hafnia alvei.'' This is likely due to the low occurrence frequency of this species in human illnesses and the fact that there are no clear-cut disease syndromes specifically associated with ''H. alvei''. The current information regarding ''Hafnia'' pathogenicity can be looked at from two perspectives; virulence factors potentially operative in extra intestinal infections and those restricted primarily to the intestin. A study mentions that mice injected intraperitoneally with hafniae did not succumb to infection. ''H. alvei'' is an uncommon human pathogen despite the increased attention from the medical community over the past decade due to its possible association with gastroenteritis. There are no well-described outbreaks of disease caused by ''H. alvei'' in which the epidemiologic, clinical, and laboratory correlates are overwhelmingly in support of an unquestionable role for hafniae in these illnesses. In a study of 17 ''Hafnia alvei'' ("''Enterobacter hafniae''") isolates recovered by the Mayo Clinic from 1968 to 1970, only 5 isolates (29%) were judged to be clinically significant. In all five of these cases'', H. alvei'' was determined to be a secondary pathogen (respiratory:2; abscess:3). Overall, the mean age of those infected or colonised with ''H. alvei'' was 52.9 years, with a male/female ratio of 1:1.1. Slightly over 50% of all isolates were acquired via a nosocomial route, including all five associated with infection. In only two instances was ''H. alvei'' recovered in pure culture, and in neither case was the strain clinically significant. It is interesting to highlight that ATCC considers that all ''Hafnia alvei'' strains belong to the Biosafety level 1 only. Furthermore, Richard identified the presence of 108 viable cells per gram of cheese, which suggests a daily consumption of more than 109 bacteria per day (calculation based on a 30 g portion) indicating the good safety profile of ''Hafnia alvei'' in daily consumption. The safety of ''Hafnia alvei'' in immunocompetent patients looks very clear and have been demonstrated for more than 4 decades up to now. Stock et al. describes a study in which 76 ''H. alvei'' isolates were investigated for their susceptibility to 69 antibiotics or drugs. The general pattern that emerges from this study is that hafniae are typically susceptible to carbapenems, monobactams, chloramphenicol, quinolones, aminoglycosides, and antifolates (e.g., trimethoprim-sulfamethoxazole) and resistant to penicillin, oxacillin, and amoxicillin plus clavulanic acid. Susceptibility to tetracyclines and cephalosporins is variable. A Spanish study, involving enteric pathogens also found that 32 strains of ''H. alvei'' were universally susceptible to all quinolones (including gemifloxacin and grepafloxacin), cefotaxime, gentamicin, co-trimoxazole, and naladixic acid; 78% of the strains in that study were susceptible to doxycycline. Some ''H. alvei'' strains produce both low-level inducible cephalosporinases (ceftazidime susceptible) and high-level constitutive cephalosporinase activity that is resistant to ceftazidime. A clinical study testing the intake of the ''H. alvei'' HA4597 strain in overweight people has shown the excellent safety of this bacteria.Déchelotte P, Breton J, Trotin-Picolo C, et al. The probiotic strain ''hafnia alvei'' HA4597® improves weight loss in overweight subjects under moderate hypocaloric diet: A proof-of-concept, multicenter randomized, double-blind placebo-controlled study. Nutrients. 2021;13:1902


Health benefits

''Hafnia'' produces a protein called Caseinolytic Protease B (ClpB) which has been shown to be a mimetic of the hormone α-MSH which is implicated in satiety. Some ''Enterobacterales'' bacteria, such as ''Hafnia alvei'' have been shown to naturally regulate the appetite. More specifically, the ''Hafnia alvei'' HA4597 strain was tested in ''ob/ob'' and high-fat diet-fed obese and overweight mice after administration by
gavage Force-feeding is the practice of feeding a human or animal against their will. The term ''gavage'' (, , ) refers to supplying a substance by means of a small plastic feeding tube passed through the nose (nasogastric tube, nasogastric) or mouth (o ...
. In those two models, the ''Hafnia alvei'' strain showed good tolerance, reduced body weight gain and fat mass in both obesity models, and a significant decrease in food intake in ''ob/ob'' mice. Another study describing the administration of the HA4597 strain to high-fat-diet-fed hyperphagic ''ob/ob'' male mice, showed a significant decrease (compared to untreated or orlistat-treated mice) in body weight, body fat and food intake but also in treated mice a decrease in blood sugar level, total plasma cholesterol and alanine aminotransaminase. In 2021, the results of a 12-week clinical study comparing oral intake of strain HA45597 versus placebo, were published in the scientific journal Nutrients. This prospective, multicenter, double-blind, placebo-controlled and randomized study in 236 overweight volunteers (BMI between 25 and 29.9 kg/m2) clinically confirmed the preclinical data. The primary efficacy endpoint "weight loss" was met: a statistically significant difference was observed in favor of the ''Hafnia alvei'' group in the proportion of subjects who lost at least 3% of their body weight at 12 weeks (57,7% in the ''Hafnia'' group versus 41,7% placebo group, p=0,028). Among the secondary endpoints achieved, a statistically significant increase in the feeling of satiety was noticed. In addition, the effect of the strain is also greater than the placebo in reducing hip circumference. Only ''Hafnia alvei'' HA4597 had an effect on the cholesterol level and induced a reduction in blood sugar levels. The scientific journal, Nature, recently qualified the strain ''Hafnia alvei'' HA4597, as a "precision probiotic", that is to say a probiotic whose strain and mechanism of action are fully described and understood scientifically. TargEDys, a French company, which demonstrated that the ''Hafnia alvei'' HA4597 strain could stimulate satiety via the ClpB protein and help to naturally control appetite and lose weight, conducted the studies enabling the marketing of this probiotic.


Regulatory status

''Hafnia alvei'' is a food grade bacteria. It is not listed in the Novel Food catalogue of the European Commission. It is listed on the Danish list of notified microbial cultures applied in food. ''Hafnia alvei'' is part of the IDF positive list
International Dairy Federation
of Microbial Food Cultures (MFC) demonstrating safety requirements in fermented food products for worldwide use. It is also classified as a Natural Health Product in the Canadian NNHPD (Natural and Non-Prescription Health Products Directorate). The ''H. alvei'' HA4597 strain is now marketed in France as a dietary supplement associated with Zinc and Chromium under the names EnteroSatys
TargEDys
and Symbiosys Satylia Chromium and Zinc by the laboratory (Biocodex), as well as with guarana and Chromium under the name of EnteroSatys Weight Management. It is also distributed in Portugal (Symbiosys Satylia), Italy (Satilia), Croatia (EnteroSatys), Turkey (Satylia), and Germany (SymbioLife Satylia).


References


External links


Type strain of ''Hafnia alvei'' at Bac''Dive'' - the Bacterial Diversity Metadatabase
{{DEFAULTSORT:Hafnia (Bacterium) Bacteria genera