Catenanes
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In
macromolecular chemistry A macromolecule is a "molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass." Polymers are physi ...
, a catenane () is a
mechanically interlocked molecular architecture In chemistry, mechanically interlocked molecular architectures (MIMAs) are molecules that are connected as a consequence of their topology. This connection of molecules is analogous to keys on a keychain loop. The keys are not directly connected to ...
consisting of two or more interlocked
macrocycle Macrocycles are often described as molecules and ions containing a ring of twelve or more atoms. Classical examples include the crown ethers, calixarenes, porphyrins, and cyclodextrins. Macrocycles describe a large, mature area of chemistry. ...
s, i.e. a molecule containing two or more intertwined rings. The interlocked rings cannot be separated without breaking the
covalent bond A covalent bond is a chemical bond that involves the sharing of electrons to form electron pairs between atoms. These electron pairs are known as shared pairs or bonding pairs. The stable balance of attractive and repulsive forces between atom ...
s of the macrocycles. They are conceptually related to other mechanically interlocked molecular architectures, such as
rotaxane A rotaxane () is a mechanically interlocked molecular architecture consisting of a dumbbell-shaped molecule which is threaded through a macrocycle (see graphical representation). The two components of a rotaxane are kinetically trapped since ...
s,
molecular knots In chemistry, a molecular knot is a mechanically interlocked molecular architecture that is analogous to a macroscopic knot. Naturally-forming molecular knots are found in organic molecules like DNA, RNA, and proteins. It is not certain that natu ...
or
molecular Borromean rings In chemistry, molecular Borromean rings are an example of a mechanically-interlocked molecular architecture in which three macrocycles are interlocked in such a way that breaking any macrocycle allows the others to dissociate. They are the small ...
. Recently the terminology "
mechanical bond In chemistry, mechanically interlocked molecular architectures (MIMAs) are molecules that are connected as a consequence of their topology. This connection of molecules is analogous to keys on a keychain loop. The keys are not directly connected to ...
" has been coined that describes the connection between the macrocycles of a catenane. Catenanes have been synthesised in two different ways: statistical synthesis and template-directed synthesis.


Synthesis

There are two primary approaches to the
organic synthesis Organic synthesis is a branch of chemical synthesis concerned with the construction of organic compounds. Organic compounds are molecules consisting of combinations of covalently-linked hydrogen, carbon, oxygen, and nitrogen atoms. Within the gen ...
of catenanes. The first is to simply perform a
ring-closing reaction A cyclic compound (or ring compound) is a term for a compound in the field of chemistry in which one or more series of atoms in the compound is connected to form a ring. Rings may vary in size from three to many atoms, and include examples where ...
with the hope that some of the rings will form around other rings giving the desired catenane product. This so-called "statistical approach" led to the first synthesis of a catenane; however, the method is highly inefficient, requiring high dilution of the "closing" ring and a large excess of the pre-formed ring, and is rarely used. The second approach relies on
supramolecular Supramolecular chemistry refers to the branch of chemistry concerning chemical systems composed of a discrete number of molecules. The strength of the forces responsible for spatial organization of the system range from weak intermolecular forces, ...
preorganization of the macrocyclic precursors utilizing
hydrogen bond In chemistry, a hydrogen bond (H-bond) is a specific type of molecular interaction that exhibits partial covalent character and cannot be described as a purely electrostatic force. It occurs when a hydrogen (H) atom, Covalent bond, covalently b ...
ing, metal coordination,
hydrophobic effect The hydrophobic effect is the observed tendency of nonpolar substances to aggregate in an aqueous solution and to be excluded by water. The word hydrophobic literally means "water-fearing", and it describes the segregation of water and nonpola ...
, or coulombic interactions. These non-covalent interactions offset some of the entropic cost of association and help position the components to form the desired catenane upon the final ring-closing. This "template-directed" approach, together with the use of high-pressure conditions, can provide yields of over 90%, thus improving the potential of catenanes for applications. An example of this approach used bis-bi
pyridinium Pyridinium refers to the cation . It is the conjugate acid of pyridine. Many related cations are known involving substituted pyridines, e.g. picolines, lutidines, collidines. They are prepared by treating pyridine with acids. As pyridine is often ...
salts which form strong complexes threaded through crown ether bis(''para''-phenylene)-34-crown-10. Template directed syntheses are mostly performed under
kinetic control Thermodynamic reaction control or kinetic reaction control in a chemical reaction can decide the composition in a reaction product mixture when competing pathways lead to different products and the reaction conditions influence the selectivity o ...
, when the macrocyclization (catenation) reaction is irreversible. More recently, the groups of
Sanders Sanders may refer to: People Surname * Sanders (surname) Given name *Sanders Anne Laubenthal (1943–2002), US writer *Sanders Shiver (born 1955), former US National Football League player Corporations * Sanders Associates, part of BAE Syste ...
and
Otto Otto is a masculine German given name and a surname. It originates as an Old High German short form (variants '' Audo'', '' Odo'', '' Udo'') of Germanic names beginning in ''aud-'', an element meaning "wealth, prosperity". The name is recorded fr ...
have shown that dynamic combinatorial approaches using reversible chemistry can be particularly successful in preparing new catenanes of unpredictable structure. The thermodynamically controlled synthesis provides an error correction mechanism; even if a macrocycle closes without forming a catenane it can re-open and yield the desired interlocked structure later. The approach also provides information on the affinity constants between different macrocycles thanks to the equilibrium between the individual components and the catenanes, allowing a titration-like experiment.


Properties

The interlocked rings rotate with respect to one another. This motion can often be evaluated by
NMR spectroscopy Nuclear magnetic resonance spectroscopy, most commonly known as NMR spectroscopy or magnetic resonance spectroscopy (MRS), is a spectroscopic technique based on re-orientation of atomic nuclei with non-zero nuclear spins in an external magnetic f ...
, among other methods. When molecular recognition motifs exist in the finished catenane (usually those that were used to synthesize the catenane), the catenane can have one or more thermodynamically preferred positions of the rings with respect to each other (recognition sites). In the case where one recognition site is a switchable moiety, a mechanical
molecular switch A molecular switch is a molecule that can be switched between two or more stable or Metastability, metastable states with the use of any external (exogenous) or internal (endogenous) stimuli, such as changes in pH, light, temperature, an electri ...
results. When a catenane is synthesized by coordination of the macrocycles around a metal ion, then removal and re-insertion of the metal ion can switch the free motion of the rings on and off. If there are more than one recognition sites, it is possible to observe distinct colors depending on the recognition site the ring occupies and thus it is possible to change the color of the catenane solution by changing the preferred recognition site. Switching between the two sites may be achieved by the use of chemical, electrochemical or even visible light based methods. Catenanes have been synthesized with many functional units, including redox-active groups (e.g.
viologen Viologens are organic compounds with the formula (C5H4NR)2n+. In some viologens, the pyridyl groups are further modified. Viologens are called so, because these compounds produce violet color on reduction iolet + Latin ''gen'', generator of ...
, TTF=
tetrathiafulvalene Tetrathiafulvalene (TTF) is an organosulfur compound with the formula . It is the parent of many tetrathiafulvenes. Studies on these heterocyclic compound contributed to the development of molecular electronics, although no practical applications ...
), photoisomerizable groups (e.g.
azobenzene Azobenzene is a photoswitchable chemical compound composed of two phenyl rings linked by a azo compound, N=N double bond. It is the simplest example of an aryl azo compound. The term 'azobenzene' or simply 'azo' is often used to refer to a wide c ...
),
fluorescent Fluorescence is one of two kinds of photoluminescence, the emission of light by a substance that has absorbed light or other electromagnetic radiation. When exposed to ultraviolet radiation, many substances will glow (fluoresce) with color ...
groups and
chiral Chirality () is a property of asymmetry important in several branches of science. The word ''chirality'' is derived from the Greek language, Greek (''kheir''), "hand", a familiar chiral object. An object or a system is ''chiral'' if it is dist ...
groups. Some such units have been used to create molecular switches as described above, as well as for the fabrication of molecular electronic devices and molecular sensors.


Families

There are a number of distinct methods of holding the precursors together prior to the ultimate ring-closing reaction in a template-directed catenane synthesis. Each
noncovalent In chemistry, a non-covalent interaction differs from a covalent bond in that it does not involve the sharing of electrons, but rather involves more dispersed variations of electromagnetic interactions between molecules or within a molecule. The ...
approach to catenane formation results in what can be considered different families of catenanes. Another family of catenanes are called pretzelanes or bridged atenanes after their likeness to
pretzel A pretzel ( ; from or , ) is a type of baking, baked pastry made from dough that is commonly shaped into a knot. The traditional pretzel shape is a distinctive symmetrical form, with the ends of a long strip of dough intertwined and then twi ...
s with a spacer linking the two macrocycles. In one such system one macrocycle is an electron deficient oligo Bis-bi
pyridinium Pyridinium refers to the cation . It is the conjugate acid of pyridine. Many related cations are known involving substituted pyridines, e.g. picolines, lutidines, collidines. They are prepared by treating pyridine with acids. As pyridine is often ...
ring and the other cycle is
crown ether In organic chemistry, crown ethers are cyclic chemical compounds that consist of a ring containing several ether groups (). The most common crown ethers are cyclic oligomers of ethylene oxide, the repeating unit being ethyleneoxy, i.e., . Impor ...
cyclophane In organic chemistry, a cyclophane is a hydrocarbon consisting of an aromatic unit (typically a benzene ring) and a Catenation, chain that forms a bridge (chemical), bridge between two non-adjacent positions of the aromatic ring. More complex der ...
based on para phenylene or
naphthalene Naphthalene is an organic compound with formula . It is the simplest polycyclic aromatic hydrocarbon, and is a white Crystal, crystalline solid with a characteristic odor that is detectable at concentrations as low as 0.08 Parts-per notation ...
.
X-ray diffraction X-ray diffraction is a generic term for phenomena associated with changes in the direction of X-ray beams due to interactions with the electrons around atoms. It occurs due to elastic scattering, when there is no change in the energy of the waves. ...
shows that due to
pi-pi interaction In chemistry, stacking refers to superposition of molecules or atomic sheets owing to attractive interactions between these molecules or sheets. Metal dichalcogenide compounds Metal dichalcogenides have the formula ME2, where M = a transition me ...
s the aromatic group of the cyclophane is held firmly inside the pyridinium ring. A limited number of (rapidly interchanging) conformers exist for this type of compound. In handcuff-shaped catenanes, two connected rings are threaded through the same ring. The bis-macrocycle (red) contains two
phenanthroline 1,10-Phenanthroline (phen) is a heterocyclic organic compound. It is a white solid that is soluble in organic solvents. The 1,10 refers to the location of the nitrogen atoms that replace CH's in the hydrocarbon called phenanthrene. Abbreviated " ...
units in a
crown ether In organic chemistry, crown ethers are cyclic chemical compounds that consist of a ring containing several ether groups (). The most common crown ethers are cyclic oligomers of ethylene oxide, the repeating unit being ethyleneoxy, i.e., . Impor ...
chain. The interlocking ring is self-assembled when two more phenanthroline units with
alkene In organic chemistry, an alkene, or olefin, is a hydrocarbon containing a carbon–carbon double bond. The double bond may be internal or at the terminal position. Terminal alkenes are also known as Alpha-olefin, α-olefins. The Internationa ...
arms coordinate through a
copper Copper is a chemical element; it has symbol Cu (from Latin ) and atomic number 29. It is a soft, malleable, and ductile metal with very high thermal and electrical conductivity. A freshly exposed surface of pure copper has a pinkish-orang ...
(I) complex followed by a metathesis ring closing step.


Nomenclature

In catenane nomenclature, a number in square brackets precedes the word "catenane" in order to indicate how many rings are involved. Discrete catenanes up to a atenane have been synthesised.


See also

*
Olympiadane Olympiadane is a mechanically interlocked molecule composed of five interlocking macrocycles that resembles the Olympic rings. The molecule is a linear pentacatenane or a atenane. It was synthesized and named by Fraser Stoddart Sir J ...
*
Polycatenane A polycatenane is a chemical substance that, like polymers, is chemically constituted by a large number of units. These units are made up of concatenated rings into a chain-like structure. It consists of mechanically linked catenane structures, v ...


References


External links

* {{Authority control Supramolecular chemistry Articles containing video clips Organic semiconductors Molecular topology Macrocycles Cyclophanes