A. Jamie Cuticchia
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Anthony James Cuticchia Jr. (December 28, 1966 – January 6, 2022) was an American scientist with expertise in the fields of
genetics Genetics is the study of genes, genetic variation, and heredity in organisms.Hartl D, Jones E (2005) It is an important branch in biology because heredity is vital to organisms' evolution. Gregor Mendel, a Moravian Augustinians, Augustinian ...
,
bioinformatics Bioinformatics () is an interdisciplinary field of science that develops methods and Bioinformatics software, software tools for understanding biological data, especially when the data sets are large and complex. Bioinformatics uses biology, ...
, and
genomics Genomics is an interdisciplinary field of molecular biology focusing on the structure, function, evolution, mapping, and editing of genomes. A genome is an organism's complete set of DNA, including all of its genes as well as its hierarchical, ...
. In particular, he was responsible for the collection of the data constituting the human gene map, prior to the final sequencing of the genome. He was also a practicing attorney. He died due to cancer on January 6, 2022.


Early life

He grew up in
College Park, Maryland College Park is a city in Prince George's County, Maryland, United States, located approximately from the northeast border of Washington, D.C. Its population was 34,740 at the 2020 United States census. It is the home of the University of Mary ...
. He received his B.A. in Biological Sciences, with honors, from the
University of Maryland, Baltimore County The University of Maryland, Baltimore County (UMBC) is a Public university, public research university in Catonsville, Maryland named after Baltimore County, Maryland, Baltimore County. It had a fall 2022 enrollment of 13,991 students, 61 un ...
in 1987. In March 1992, he completed his Ph.D. in
Genetics Genetics is the study of genes, genetic variation, and heredity in organisms.Hartl D, Jones E (2005) It is an important branch in biology because heredity is vital to organisms' evolution. Gregor Mendel, a Moravian Augustinians, Augustinian ...
at the
University of Georgia The University of Georgia (UGA or Georgia) is a Public university, public Land-grant university, land-grant research university with its main campus in Athens, Georgia, United States. Chartered in 1785, it is the oldest public university in th ...
studying under population scientist Jonathan Arnold. He went on to receive a J.D. magna cum laude, from the North Carolina Central University School of Law in 2009.


Accomplishments

In the late 1980s Cuticchia applied the probabilistic metaheuristic method of
simulated annealing Simulated annealing (SA) is a probabilistic technique for approximating the global optimum of a given function. Specifically, it is a metaheuristic to approximate global optimization in a large search space for an optimization problem. ...
as a method for genomic mapping. Through the use of binary fingerprinting of DNA (assigning the presence or absence of a particular sequence a 1/0) it was possible to quickly map the genome of
Aspergillus nidulans ''Aspergillus nidulans'' (also called '' Emericella nidulans'' when referring to its sexual form, or teleomorph) is one of many species of filamentous fungi in the phylum Ascomycota. It has been an important research organism for studying eukary ...
. This was one of the first genomes physically mapped In addition to his work in the development of mapping tools, in 1988, along with others, he applied the
Markov chain In probability theory and statistics, a Markov chain or Markov process is a stochastic process describing a sequence of possible events in which the probability of each event depends only on the state attained in the previous event. Informally ...
model to predict the occurrence of DNA patterns. He was the original Data Manager of the GDB Human Genome Database and served as its director both in Toronto at The Hospital for Sick Children as well as at RTI International. He published several books on the human genome during the genetic mapping phase of the
human genome project The Human Genome Project (HGP) was an international scientific research project with the goal of determining the base pairs that make up human DNA, and of identifying, mapping and sequencing all of the genes of the human genome from both a ...
.


Career

*
Johns Hopkins School of Medicine The Johns Hopkins University School of Medicine (JHUSOM) is the medical school of Johns Hopkins University, a private research university in Baltimore, Maryland. Established in 1893 following the construction of the Johns Hopkins Hospital, th ...
: In 1992 he took a position as Assistant Professor of Medical Genetics at The Johns Hopkins University School of Medicine. During that period he served as Data Manager for the GDB and later as Director of Data Acquisition and Curation. He remained an adjunct professor with Johns Hopkins until 2001. *
Mitre Corporation The Mitre Corporation (stylized as The MITRE Corporation and MITRE) is an American not-for-profit organization with dual headquarters in Bedford, Massachusetts, and McLean, Virginia. It manages federally funded research and development centers ...
: In 1995 he took the position of Director of Computational Biology and developed a consulting business for the company in McLean Virginia. * ChemGenics Pharmaceuticals: In 1997 Cuticchia moved to Boston, where he took on an executive position as Director of Genomics and Information technology at ChemGenics Pharmaceuticals. In 1998 the company was merged with Millennium Pharmaceuticals, and Cuticchia returned to academics. * Hospital for Sick Children: In 1998 Cuticchia took the first of several roles at the HSC. Initially appointed as Director of Bioinformatics, he later raised approximately $52,000,000 in research support to form numerous projects and organizations. First, he relocated the GDB to HSC while maintaining some of its operations at Johns Hopkins. Later, he established the Ontario Center for Genomic Computing, which was one of the Top 500 supercomputing sites in the world. *
RTI International Research Triangle Institute, operating as RTI International, is a nonprofit organization headquartered in the Research Triangle Park in North Carolina, USA. RTI provides research and technical services. It was founded in 1958 with $500,000 in fu ...
: In 2002 he returned to the United States to build a bioinformatics department at the Research Triangle Institute. *
Duke University School of Medicine The Duke University School of Medicine, commonly known as Duke Med, is the medical school of Duke University. It was established in 1925 by James B. Duke. The School of Medicine, along with the Duke University School of Nursing, Duke Universi ...
: From 2006, Cuticchia served in various bioinformatics related roles at Duke. In 2008 he was named the Duke Bioinformatics Scholar and built a research portfolio in cancer bioinformatics. * AJC Legal Services: In 2010, Cuticchia applied his newly acquired license to practice law in North Carolina focusing on biotechnology and pharmaceutical law. *
North Carolina Central University North Carolina Central University (NCCU or NC Central) is a Public university, public Historically black colleges and universities, historically black university in Durham, North Carolina, United States. Founded by James E. Shepard in affiliati ...
: From 2010, Cuticchia taught undergraduates and law students in courses including: Patent Law, Genetics and the Law, and FDA Regulations


Biotechnology involvement

Cuticchia was a scientific founder of New Chemical Entities, a drug discovery and information company founded in 1997. In 1999 it merged with Thetagen, a provided of pharmacogenomic services. New Chemical Entities was merged with Albany Molecular Research in 2001.


Awards

Cuticchia won numerous awards including: * National Cancer Institute
caBIG The cancer Biomedical Informatics Grid (caBIG) was a US government program to develop an open-source, open access information network called caGrid for secure data exchange on cancer research. The initiative was developed by the National Cance ...
Outstanding Achievement Award for his work in developing bioinformatics tools for the NCI in 2007. * Numerous awards from the
Research Triangle Institute Research Triangle Institute, operating as RTI International, is a nonprofit organization headquartered in the Research Triangle Park in North Carolina, USA. RTI provides research and technical services. It was founded in 1958 with $500,000 in fu ...
including the Presidential Award for his work in the development of bioinformatics. * He was ranked as one of the Top Three Bioinformatics Scientists by Genome Technology in 2001. * In 2003 he was inducted in the GT All-Stars Academy for his international contributions in bioinformatics.The 2003 Genome Technology All-Stars Genome Technology GenomeWeb
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Bibliography


Books

* ''Chromosome Coordinating Meeting 1992 (CCM92 : Baltimore Conference)'', with P.L. Pearson, Basel: S. Karger Pub, 1993, * ''Human Gene Mapping, 1993: A Compendium'', Baltimore: Johns Hopkins University Press, 1994, * ''Human Gene Mapping, 1994: A Compendium'', Baltimore: Johns Hopkins University Press, 1995, * ''Human Gene Mapping, 1995: A Compendium'', Baltimore: Johns Hopkins University Press, 1996, * ''Methods of Microarray Data Analysis VI'', Scotts Valley: Create Space Publishing, 2009, * ''Genetics: A Handbook for Lawyers'', Chicago, ABA Book Publishing, 2010, * ''The Letter: A Satirical Look at Becoming a Lawyer'', CS Publishing, 2012,


References


External links


GDB
on web.archive.org (No Longer in Service) {{DEFAULTSORT:Cuticchia, A. Jamie 1966 births 2022 deaths American geneticists American bioinformaticians University of Georgia alumni Scientists from Washington, D.C.