Deltaretrovirus Antigens
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Deltaretrovirus Antigens
''Deltaretrovirus'' is a genus of the ''Retroviridae'' family. It consists of exogenous horizontally transmitted viruses found in several groups of mammals. The genus contains Bovine leukemia virus and three species of primate T-lymphotropic virus. The genus of viruses is known for its propensity to target immune cells and oncogenicity, evident in the names of the four named species. Infection is usually asymptomatic, but inflammation and cancer can develop over time. Classification The genus contains the following species, listed by scientific name and followed by the exemplar virus of the species: * ''Deltaretrovirus bovleu'', Bovine leukemia virus * ''Deltaretrovirus priTlym1'', Primate T-lymphotropic virus 1 * ''Deltaretrovirus priTlym2'', Primate T-lymphotropic virus 2 * ''Deltaretrovirus priTlym3'', Primate T-lymphotropic virus 3 Two additional PTLVs are known but not recognized: HTLV-4 (South Cameroon, 2005) and STLV-5 (Mac B43 strain, highly divergent PTLV-1). In add ...
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Classification
Classification is the activity of assigning objects to some pre-existing classes or categories. This is distinct from the task of establishing the classes themselves (for example through cluster analysis). Examples include diagnostic tests, identifying spam emails and deciding whether to give someone a driving license. As well as 'category', synonyms or near-synonyms for 'class' include 'type', 'species', 'order', 'concept', 'taxon', 'group', 'identification' and 'division'. The meaning of the word 'classification' (and its synonyms) may take on one of several related meanings. It may encompass both classification and the creation of classes, as for example in 'the task of categorizing pages in Wikipedia'; this overall activity is listed under taxonomy. It may refer exclusively to the underlying scheme of classes (which otherwise may be called a taxonomy). Or it may refer to the label given to an object by the classifier. Classification is a part of many different kinds of activ ...
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Primate T-lymphotropic Virus 3
Primates is an order (biology), order of mammals, which is further divided into the Strepsirrhini, strepsirrhines, which include lemurs, galagos, and Lorisidae, lorisids; and the Haplorhini, haplorhines, which include Tarsiiformes, tarsiers and simians (monkeys and apes). Primates arose 74–63 million years ago first from small terrestrial animal, terrestrial mammals, which adapted for life in tropical forests: many primate characteristics represent adaptations to the challenging environment among Canopy (biology), tree tops, including large brain sizes, binocular vision, color vision, Animal communication, vocalizations, shoulder girdles allowing a large degree of movement in the upper limbs, and opposable thumbs (in most but not all) that enable better grasping and dexterity. Primates range in size from Madame Berthe's mouse lemur, which weighs , to the eastern gorilla, weighing over . There are 376–524 species of living primates, depending on which classification is ...
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Fossa (animal)
The fossa (''Cryptoprocta ferox''; or ; ) is a slender, long-tailed, cat-like mammal that is endemic to Madagascar. It is a member of the carnivora, carnivoran family Eupleridae. The fossa is the largest mammalian carnivore on Madagascar and has been compared to a small cougar, as it has Convergent evolution, convergently evolved many cat-like features. Adults have a head-body length of and weigh between , with the males larger than the females. It has semi-retractable claws (meaning it can extend but not retract its claws fully) and flexible ankles that allow it to climb up and down trees head-first, and also support jumping from tree to tree. A larger relative of the species, ''Cryptoprocta spelea'', probably became extinct before 1400. The species is widespread, although population density, population densities are usually low. It is found solely in forested habitat, and actively hunts both by day and night. Over 50% of its diet consists of lemurs, the endemic primates f ...
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Mongoose
A mongoose is a small terrestrial carnivorous mammal belonging to the family Herpestidae. This family has two subfamilies, the Herpestinae and the Mungotinae. The Herpestinae comprises 23 living species that are native to southern Europe, Africa and Asia, whereas the Mungotinae comprises 11 species native to Africa. The Herpestidae originated about in the Early Miocene and genetically diverged into two main lineages between 19.1 and . There is a large introduced population on the islands of Hawaii. Mongoose diets are varied but consist of mainly insects, hatchlings, reptiles and birds. Etymology The name is derived from names used in India for ''Herpestes'' species: or in classical Hindi; in Marathi; in Telugu; , and in Kannada. The form of the English name (since 1698) was altered to its "- goose" ending by folk etymology. It was spelled "mungoose" in the 18th and 19th centuries. The plural form is "mongooses", although "mongeese" is also used. Characteristics ...
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Solenodon
Solenodons (from , 'channel' or 'pipe' and , 'tooth') are venomous, nocturnal, burrowing, insectivorous mammals belonging to the family Solenodontidae . The two living solenodon species are the Cuban solenodon (''Atopogale cubana'') and the Hispaniolan solenodon (''Solenodon paradoxus''). Threats to both species include habitat destruction and predation by non-native cats, dogs, and mongooses, introduced by humans to the solenodons' home islands to control snakes and rodents. The Hispaniolan solenodon covers a wide range of habitats on the island of Hispaniola from lowland dry forest to highland pine forest. Two other described species became extinct during the Quaternary period. Oligocene North American genera, such as '' Apternodus'', have been suggested as relatives of ''Solenodon'', but the origins of the animal remain obscure. Taxonomy Two genera, '' Atopogale'' and '' Solenodon'', are known, each with one extant species. Other genera have been erected, but ar ...
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Long Terminal Repeat
A long terminal repeat (LTR) is a pair of identical sequences of DNA, several hundred base pairs long, which occur in eukaryotic genomes on either end of a series of genes or pseudogenes that form a retrotransposon or an endogenous retrovirus or a retroviral provirus. All retroviral genomes are flanked by LTRs, while there are some retrotransposons without LTRs. Typically, an element flanked by a pair of LTRs will encode a reverse transcriptase and an integrase, allowing the element to be copied and inserted at a different location of the genome. Copies of such an LTR-flanked element can often be found hundreds or thousands of times in a genome. LTR retrotransposons comprise about 8% of the human genome. The first LTR sequences were found by A.P. Czernilofsky and J. Shine in 1977 and 1980. Transcription The LTR-flanked sequences are partially transcribed into an RNA intermediate, followed by reverse transcription into complementary DNA (cDNA) and ultimately dsDNA (doubl ...
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Endogenous Retrovirus
Endogenous retroviruses (ERVs) are endogenous viral elements in the genome that closely resemble and can be derived from retroviruses. They are abundant in the genomes of jawed vertebrates, and they comprise up to 5–8% of the human genome (lower estimates of ~1%). An ERV is a vertically inherited proviral sequence and a subclass of a type of gene called a transposon, which can normally be packaged and moved within the genome to serve a vital role in gene expression and in regulation. ERVs, however, lack most transposon functions, are typically not infectious, and are often defective genomic remnants of the retroviral replication cycle. They are distinguished as germline provirus retroelements due to their integration and reverse-transcription into the nuclear genome of the host cell. Researchers have suggested that retroviruses evolved from a type of transposon called a retrotransposon, a Class I element; these genes can mutate and instead of moving to another locati ...
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South Cameroon
South is one of the cardinal directions or compass points. The direction is the opposite of north and is perpendicular to both west and east. Etymology The word ''south'' comes from Old English ''sūþ'', from earlier Proto-Germanic ''*sunþaz'' ("south"), possibly related to the same Proto-Indo-European root that the word ''sun'' derived from. Some languages describe south in the same way, from the fact that it is the direction of the sun at noon (in the Northern Hemisphere), like Latin meridies 'noon, south' (from medius 'middle' + dies 'day', ), while others describe south as the right-hand side of the rising sun, like Biblical Hebrew תֵּימָן teiman 'south' from יָמִין yamin 'right', Aramaic תַּימנַא taymna from יָמִין yamin 'right' and Syriac ܬܰܝܡܢܳܐ taymna from ܝܰܡܝܺܢܳܐ yamina (hence the name of Yemen, the land to the south/right of the Levant). South is sometimes abbreviated as S. Navigation By convention, the ''bottom or down-f ...
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Primate T-lymphotropic Virus 2
A virus closely related to HTLV-I, human T-lymphotropic virus 2 (HTLV-II) shares approximately 70% genomic homology (structural similarity) with HTLV-I. It was discovered by Robert Gallo and colleagues. HTLV-2 is prevalent in Africa and among Indigenous peoples in Central and South America, as well as among drug users in Europe and North America. It can be passed down from mother to child through breast milk, and even genetically from either parent. HTLV-II entry in target cells is mediated by the glucose transporter GLUT1. Virology HTLV-1 and HTLV-2 share broad similarities in their overall genetic organization and expression pattern, but they differ substantially in their pathogenic properties. The virus utilizes the GLUT-1 and NRP1 cellular receptors for their entry, although HTLV-1, but not HTLV-2, is dependent on heparan sulfate proteoglycans. Cell-to-cell transmission is essential for the virus replication and occurs through the formation of a virological syn ...
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Genus
Genus (; : genera ) is a taxonomic rank above species and below family (taxonomy), family as used in the biological classification of extant taxon, living and fossil organisms as well as Virus classification#ICTV classification, viruses. In binomial nomenclature, the genus name forms the first part of the binomial species name for each species within the genus. :E.g. ''Panthera leo'' (lion) and ''Panthera onca'' (jaguar) are two species within the genus ''Panthera''. ''Panthera'' is a genus within the family Felidae. The composition of a genus is determined by taxonomy (biology), taxonomists. The standards for genus classification are not strictly codified, so different authorities often produce different classifications for genera. There are some general practices used, however, including the idea that a newly defined genus should fulfill these three criteria to be descriptively useful: # monophyly – all descendants of an ancestral taxon are grouped together (i.e. Phylogeneti ...
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Primate T-lymphotropic Virus 1
Human T-cell lymphotropic virus type 1 or human T-lymphotropic virus (HTLV-I), also called the adult T-cell lymphoma virus type 1, is a retrovirus of the human T-lymphotropic virus (HTLV) family. Most people with HTLV-1 infection do not appear to develop health conditions that can be directly linked to the infection. However, there is a subgroup of people who experience severe complications. The most well characterized are adult T-cell lymphoma (ATL) and HTLV-I-associated myelopathy/Tropical spastic paraparesis (HAM/TSP), both of which are only diagnosed in individuals testing positive to HTLV-1 infection. The estimated lifetime risk of ATL among people with HTLV-1 infection is approximately 5%, while that of HAM/TSP is approximately 2%. In 1977, Adult T-cell lymphoma (ATL) was first described in a case series of individuals from Japan. The symptoms of ATL were different from other lymphomas known at the time. The common birthplace shared amongst most of the ATL patients was su ...
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Primate T-lymphotropic Virus
The primate T-lymphotropic viruses (PTLVs) are a group of retroviruses that infect primates, using their lymphocytes to reproduce. The ones that infect humans are known as human T-lymphotropic virus (HTLV), and the ones that infect Old World monkeys are called simian T-lymphotropic viruses (STLVs). PTLVs are named for their ability to cause adult T-cell leukemia/lymphoma, but in the case of HTLV-1 it can also cause a demyelinating disease called tropical spastic paraparesis. On the other hand, newer PTLVs are simply placed into the group by similarity and their connection to human disease remains unclear. HTLVs have evolved from STLVs by interspecies transmission. Within each species of PTLV, the HTLV is more similar to its cognate STLV than to the other HTLVs. There are currently three species of PTLVs recognized by the ICTV (P/H/STLV-1, -2, -3), plus two that are reported but unrecognized (HTLV-4, STLV-5). The first known, and still most medically important PTLV is HTLV-1, dis ...
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