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Chlorophyll Synthase
In enzymology, chlorophyll synthase () is an enzyme that catalyzes the chemical reaction :chlorophyllide a + phytyl diphosphate \rightleftharpoons chlorophyll a + diphosphate The two substrates of this enzyme are chlorophyllide ''a'' and phytyl diphosphate; its two products are chlorophyll ''a'' and diphosphate. The same enzyme can act on chlorophyllide ''b'' to form chlorophyll ''b'' and similarly for chlorophyll ''d'' and ''f''. Chlorophyllide a.svg, Chlorophyllide ''a'' Chlorophyll a structure.svg, Chlorophyll ''a'' This enzyme belongs to the family of transferases, specifically those transferring aryl or alkyl groups other than methyl groups. The systematic name of this enzyme class is chlorophyllide-a:phytyl-diphosphate phytyltransferase. This reaction is the final step of the complete biosynthetic pathway to chlorophylls from glutamic acid Glutamic acid (symbol Glu or E; known as glutamate in its anionic form) is an α- amino acid that is used by almost all ...
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Enzymology
An enzyme () is a protein that acts as a biological catalyst by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme converts the substrates into different molecules known as product (chemistry), products. Almost all metabolism, metabolic processes in the cell (biology), cell need enzyme catalysis in order to occur at rates fast enough to sustain life. Metabolic pathways depend upon enzymes to catalyze individual steps. The study of enzymes is called ''enzymology'' and the field of pseudoenzyme, pseudoenzyme analysis recognizes that during evolution, some enzymes have lost the ability to carry out biological catalysis, which is often reflected in their amino acid sequences and unusual 'pseudocatalytic' properties. Enzymes are known to catalyze more than 5,000 biochemical reaction types. Other biocatalysts include Ribozyme, catalytic RNA molecules, also called ribozymes. They are sometimes descr ...
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Chlorophyll D
Chlorophyll ''d'' (Chl ''d'') is a form of chlorophyll, identified by Harold Strain and Winston Manning in 1943. It was unambiguously identified in '' Acaryochloris marina'' in the 1990s. It is present in cyanobacteria which use energy captured from sunlight for photosynthesis. Chl ''d'' absorbs far-red Far-red light is a range of light at the extreme red end of the visible spectrum, just before infrared light. Usually regarded as the region between 700 and 750 nm wavelength, it is dimly visible to human eyes. It is largely reflected or transmit ... light, at 710 nm wavelength, just outside the optical range. An organism that contains Chl ''d'' is adapted to an environment such as moderately deep water, where it can use far red light for photosynthesis, although there is not a lot of visible light. Chl ''d'' is produced from chlorophyllide ''d'' by chlorophyll synthase. Chlorophyllide ''d'' is made from chlorophyllide ''a'', but the oxygen-using enzyme that performs this con ...
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Chlorophyllide
Chlorophyllide ''a'' and chlorophyllide ''b'' are the biosynthesis, biosynthetic precursors of chlorophyll a, chlorophyll ''a'' and chlorophyll b, chlorophyll ''b'' respectively. Their propionic acid groups are converted to phytol, phytyl esters by the enzyme chlorophyll synthase in the final step of the pathway. Thus the main interest in these chemical compounds has been in the study of chlorophyll biosynthesis in plants, algae and cyanobacteria. Chlorophyllide ''a'' is also an intermediate in the biosynthesis of bacteriochlorophylls. Structures Chlorophyllide ''a'', is a carboxylic acid (R=H). In chlorophyllide ''b'', the methyl group at position 13 (IUPAC nomenclature of organic chemistry, IUPAC numbering for chlorophyllide ''a'') and highlighted in the green box, is replaced with a aldehyde, formyl Functional group, group. Biosynthesis steps up to formation of protoporphyrin IX In the early steps of the biosynthesis, which starts from glutamic acid, a tetrapyrrole is created b ...
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Glutamic Acid
Glutamic acid (symbol Glu or E; known as glutamate in its anionic form) is an α- amino acid that is used by almost all living beings in the biosynthesis of proteins. It is a non-essential nutrient for humans, meaning that the human body can synthesize enough for its use. It is also the most abundant excitatory neurotransmitter in the vertebrate nervous system. It serves as the precursor for the synthesis of the inhibitory gamma-aminobutyric acid (GABA) in GABAergic neurons. Its molecular formula is . Glutamic acid exists in two optically isomeric forms; the dextrorotatory -form is usually obtained by hydrolysis of gluten or from the waste waters of beet-sugar manufacture or by fermentation.Webster's Third New International Dictionary of the English Language Unabridged, Third Edition, 1971. Its molecular structure could be idealized as HOOC−CH()−()2−COOH, with two carboxyl groups −COOH and one amino group −. However, in the solid state and mildly acidic water s ...
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Chlorophyll
Chlorophyll is any of several related green pigments found in cyanobacteria and in the chloroplasts of algae and plants. Its name is derived from the Greek words (, "pale green") and (, "leaf"). Chlorophyll allows plants to absorb energy from light. Those pigments are involved in oxygenic photosynthesis, as opposed to bacteriochlorophylls, related molecules found only in bacteria and involved in anoxygenic photosynthesis. Chlorophylls absorb light most strongly in the blue portion of the electromagnetic spectrum as well as the red portion. Conversely, it is a poor absorber of green and near-green portions of the spectrum. Hence chlorophyll-containing tissues appear green because green light, diffusively reflected by structures like cell walls, is less absorbed. Two types of chlorophyll exist in the photosystems of green plants: chlorophyll ''a'' and ''b''. History Chlorophyll was first isolated and named by Joseph Bienaimé Caventou and Pierre Joseph Pelletier in ...
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Biosynthetic Pathway
In biochemistry, a metabolic pathway is a linked series of chemical reactions occurring within a cell. The reactants, products, and intermediates of an enzymatic reaction are known as metabolites, which are modified by a sequence of chemical reactions catalyzed by enzymes. In most cases of a metabolic pathway, the product of one enzyme acts as the substrate for the next. However, side products are considered waste and removed from the cell. Different metabolic pathways function in the position within a eukaryotic cell and the significance of the pathway in the given compartment of the cell. For instance, the electron transport chain and oxidative phosphorylation all take place in the mitochondrial membrane. In contrast, glycolysis, pentose phosphate pathway, and fatty acid biosynthesis all occur in the cytosol of a cell. There are two types of metabolic pathways that are characterized by their ability to either synthesize molecules with the utilization of energy ( anabolic pa ...
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List Of Enzymes
Enzymes are listed here by their classification in the International Union of Biochemistry and Molecular Biology's Enzyme Commission (EC) numbering system: :Oxidoreductases (EC 1) ( Oxidoreductase) * Dehydrogenase * Luciferase * DMSO reductase :EC 1.1 (act on the CH-OH group of donors) * :EC 1.1.1 (with NAD+ or NADP+ as acceptor) ** Alcohol dehydrogenase (NAD) ** Alcohol dehydrogenase (NADP) ** Homoserine dehydrogenase ** Aminopropanol oxidoreductase ** Diacetyl reductase ** Glycerol dehydrogenase ** Propanediol-phosphate dehydrogenase ** glycerol-3-phoshitiendopene dehydrogenase (NAD+) ** D-xylulose reductase ** L-xylulose reductase ** Lactate dehydrogenase ** Malate dehydrogenase ** Isocitrate dehydrogenase ** HMG-CoA reductase * :EC 1.1.2 (with a cytochrome as acceptor) * :EC 1.1.3 (with oxygen as acceptor) ** Glucose oxidase ** L-gulonolactone oxidase ** Thiamine oxidase ** Xanthine oxidase * EC 1.1.4 (with a disulfide as accep ...
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Transferase
In biochemistry, a transferase is any one of a class of enzymes that catalyse the transfer of specific functional groups (e.g. a methyl or glycosyl group) from one molecule (called the donor) to another (called the acceptor). They are involved in hundreds of different biochemical pathways throughout biology, and are integral to some of life's most important processes. Transferases are involved in myriad reactions in the cell. Three examples of these reactions are the activity of coenzyme A (CoA) transferase, which transfers thiol esters, the action of N-acetyltransferase, which is part of the pathway that metabolizes tryptophan, and the regulation of pyruvate dehydrogenase (PDH), which converts pyruvate to acetyl CoA. Transferases are also utilized during translation. In this case, an amino acid chain is the functional group transferred by a peptidyl transferase. The transfer involves the removal of the growing amino acid chain from the tRNA molecule in the A-site of the ...
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Chlorophyll F
Chlorophyll ''f'' (Chl ''f'') is a type form of chlorophyll that absorbs further in the red ( infrared light) than other chlorophylls. In 2010, it was reported by Min Chen to be present in stromatolites from Western Australia's Shark Bay Shark Bay () is a World Heritage Site in the Gascoyne region of Western Australia. The area is located approximately north of Perth, on the westernmost point of the Australian continent. UNESCO's listing of Shark Bay as a World Heritage S .... The function of Chl ''f'' in photosynthetic reactions is uncertain and the ecological distribution of Chl ''f'' remains unknown. Chl ''f'' has been shown to support some of the roles in photosynthetic reactions, in both the energy transfer and in the charge separation processes. Chl ''f'' is produced from chlorophyllide ''f'' by chlorophyll synthase. Chlorophyllide ''f'' is made from chlorophyllide ''a'' by an enzyme known as PsbA4 or ChlF. References {{DEFAULTSORT: ...
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Chlorophyll B
} Chlorophyll ''b'' is a form of chlorophyll. Chlorophyll ''b'' helps in photosynthesis by absorbing light energy. It is more soluble than chlorophyll ''a'' in polar solvents because of its carbonyl group. Its color is green, and it primarily absorbs blue light. In land plants, the light-harvesting antennae around photosystem II contain the majority of chlorophyll ''b''. Hence, in shade-adapted chloroplasts, which have an increased ratio of photosystem II to photosystem I, there is a higher ratio of chlorophyll ''b'' to chlorophyll ''a''. This is adaptive, as increasing chlorophyll ''b'' increases the range of wavelengths absorbed by the shade chloroplasts. Biosynthesis The Chlorophyll ''b'' biosynthetic pathway utilizes a variety of enzymes. In most plants, chlorophyll is derived from glutamate and is synthesised along a branched pathway that is shared with heme and siroheme. The initial steps incorporate glutamic acid into 5-aminolevulinic acid (ALA); two molecules o ...
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Enzyme
An enzyme () is a protein that acts as a biological catalyst by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme converts the substrates into different molecules known as product (chemistry), products. Almost all metabolism, metabolic processes in the cell (biology), cell need enzyme catalysis in order to occur at rates fast enough to sustain life. Metabolic pathways depend upon enzymes to catalyze individual steps. The study of enzymes is called ''enzymology'' and the field of pseudoenzyme, pseudoenzyme analysis recognizes that during evolution, some enzymes have lost the ability to carry out biological catalysis, which is often reflected in their amino acid sequences and unusual 'pseudocatalytic' properties. Enzymes are known to catalyze more than 5,000 biochemical reaction types. Other biocatalysts include Ribozyme, catalytic RNA molecules, also called ribozymes. They are sometimes descr ...
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Diphosphate
In chemistry, pyrophosphates are phosphorus oxyanions that contain two phosphorus atoms in a linkage. A number of pyrophosphate salts exist, such as disodium pyrophosphate () and tetrasodium pyrophosphate (), among others. Often pyrophosphates are called diphosphates. The parent pyrophosphates are derived from partial or complete neutralization of pyrophosphoric acid. The pyrophosphate bond is also sometimes referred to as a phosphoanhydride bond, a naming convention which emphasizes the loss of water that occurs when two phosphates form a new bond, and which mirrors the nomenclature for anhydrides of carboxylic acids. Pyrophosphates are found in ATP and other nucleotide triphosphates, which are important in biochemistry. The term pyrophosphate is also the name of esters formed by the condensation of a phosphorylated biological compound with inorganic phosphate, as for dimethylallyl pyrophosphate. This bond is also referred to as a high-energy phosphate bond. Acidity Pyr ...
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