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Viroids
Viroids are small single-stranded, circular RNAs that are infectious pathogens. Unlike viruses, they have no protein coating. All known viroids are inhabitants of angiosperms (flowering plants), and most cause diseases, whose respective economic importance to humans varies widely. A recent metatranscriptomics study suggests that the host diversity of viroids and viroid-like elements is broader than previously thought and that it would not be limited to plants, encompassing even the prokaryotes. The first discoveries of viroids in the 1970s triggered the historically third major extension of the biosphere—to include smaller lifelike entities—after the discoveries in 1675 by Antonie van Leeuwenhoek (of the "subvisible" microorganisms) and in 1892–1898 by Dmitri Iosifovich Ivanovsky and Martinus Beijerinck (of the "submicroscopic" viruses). The unique properties of viroids have been recognized by the International Committee on Taxonomy of Viruses, in creating a new o ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Potato Spindle Tuber Viroid
The potato spindle tuber viroid (PSTVd, ''Pospiviroid fusituberis'') was the first viroid to be identified.Discovery of Viroids PSTVd is a small, single stranded circular RNA molecule closely related to the chrysanthemum stunt viroid. Present within the viroidal RNA is the Pospiviroid RY motif stem loop common to its genus. The natural hosts are potatoes (''Solanum tuberosum'') and tomatoes (''Solanum lycopersicum''). All potatoes and tomatoes are susceptible to PSTVd and there is no form of natural resistance. Natural infections have also been seen in avocados and infections in other solanaceous crops have been induced in the laboratory. Until 2017 PSTVd was thought to be unable to infect ''Solanum sisymbriifolium''. Then ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
RNA World
The RNA world is a hypothetical stage in the evolutionary history of life on Earth in which self-replicating RNA molecules proliferated before the evolution of DNA and proteins. The term also refers to the hypothesis that posits the existence of this stage. Alexander Rich first proposed the concept of the RNA world in 1962, and Walter Gilbert coined the term in 1986. Among the characteristics of RNA that suggest its original prominence are that: * Like DNA, RNA can store and replicate genetic information. Although RNA is considerably more fragile than DNA, some ancient RNAs may have evolved the ability to methylate other RNAs to protect them. The concurrent formation of all four RNA building blocks further strengthens the hypothesis. * Enzymes made of RNA ( ribozymes) can catalyze (start or accelerate) chemical reactions that are critical for life, so it is conceivable that in an RNA world, ribozymes might have preceded enzymes made of protein. * Many coenzymes that have ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Avsunviroidae
The ''Avsunviroidae'' are a family of viroids. There are five species in three genera ('' Avsunviroid'', '' Elaviroid'' and '' Pelamoviroid''). They consist of RNA genomes between 246 and 375 nucleotides in length. They are single-stranded covalent circles and have intramolecular base pairing. All members lack a central conserved region. Replication Replication occurs in the chloroplasts of plant cells. Key features of replication include no helper virus required and no proteins are encoded for. Unlike the other family of viroids, '' Pospiviroidae'', ''Avsunviroidae'' are thought to replicate via a symmetrical rolling mechanism. It is thought the positive RNA strand acts as a template to form negative strands with the help of an enzyme thought to be RNA polymerase plus 3 II. The negative RNA strands are then cleaved by ribozyme activity and circularises. A second rolling circle mechanism forms a positive strand which is also cleaved by ribozyme activity and then ligated to b ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Theodor Otto Diener
Theodor Otto Diener (28 February 1921 – 28 March 2023) was a Swiss-American plant pathologist. In 1971, he discovered that the causative agent of the potato spindle tuber disease is not a virus, but a novel agent, which consists solely of a short strand of single-stranded RNA without a protein capsid, eighty times smaller than the smallest viruses. He proposed to name it, and similar agents yet to be discovered, viroids. Viroids displaced viruses as the smallest known infectious agents. Biography Diener was born in Zürich, Switzerland on 28 February 1921. He attended the Swiss Federal Institute of Technology, from which he graduated with a Dr.sc.nat.ETH degree in 1946. After graduation, he worked as a research assistant at the Swiss Federal Experiment Station for Viticulture and Horticulture at Wädenswil, where he discovered on leaves of a cherry tree the first occurrence in more than 100 years of a rust fungus (''Puccinia cerasi''), a fungus which is common south of the Alps ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Rolling Circle
Rolling circle replication (RCR) is a process of unidirectional nucleic acid replication that can rapidly synthesize multiple copies of circular molecules of DNA or RNA, such as plasmids, the genomes of bacteriophages, and the circular RNA genome of viroids. Some eukaryotic viruses also replicate their DNA or RNA via the rolling circle mechanism. As a simplified version of natural rolling circle DNA replication, replication, an isothermal DNA amplification technique, rolling circle amplification was developed. The RCA mechanism is widely used in molecular biology and biomedical nanotechnology, especially in the field of Biosensor, biosensing (as a method of signal amplification). Circular DNA replication Rolling circle DNA replication is initiated by an initiator protein encoded by the plasmid or bacteriophage DNA, which nicks one strand of the double-stranded, circular DNA molecule at a site called the double-strand origin, or DSO. The initiator protein remains bound to the ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Circular RNA
In molecular biology, circular ribonucleic acid (or circRNA) is a type of single-stranded RNA which, unlike linear RNA, forms a covalently closed continuous loop. In circular RNA, the 3' and 5' ends normally present in an RNA molecule have been joined together. This feature confers numerous properties to circular RNA, many of which have only recently been identified. Many types of circular RNA arise from otherwise protein-coding genes. Some circular RNA have been shown to code for proteins. Some types of circular RNA have also recently shown potential as gene regulators. The biological function of most circular RNA is unclear. Because circular RNA do not have 5' or 3' ends, they are resistant to exonuclease-mediated degradation and are presumably more stable than most linear RNA in cells. Circular RNA has been linked to some diseases such as cancer. RNA splicing In contrast to genes in bacteria, eukaryotic genes are split by non-coding sequences called introns. In eukaryo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Virus
A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Viruses are found in almost every ecosystem on Earth and are the most numerous type of biological entity. Since Dmitri Ivanovsky's 1892 article describing a non-bacterial pathogen infecting tobacco plants and the discovery of the tobacco mosaic virus by Martinus Beijerinck in 1898, more than 16,000 of the millions of List of virus species, virus species have been described in detail. The study of viruses is known as virology, a subspeciality of microbiology. When infected, a host cell is often forced to rapidly produce thousands of copies of the original virus. When not inside an infected cell or in the process of infecting a cell, viruses exist in the form of independent viral particles, or ''virions'', consisting of (i) genetic material, i.e., long ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Retrozyme
Retrozymes are a family of retrotransposons first discovered in the genomes of plants but now also known in genomes of animals. Retrozymes contain a hammerhead ribozyme (HHR) in their sequences (and so the name ''retrozyme'' is a combination of ''retrotransposon'' and ''hammerhead ribozyme''), although they do not possess any coding regions. Retrozymes are nonautonomous retroelements, and so borrow proteins from other elements to move into new regions of a genome. Retrozymes are actively transcribed into covalently closed circular RNAs (circRNAs or cccRNAs) and are detected in both polarities, which may indicate the use of rolling circle replication in their lifecycle. The genomic structure of a retrozyme in plants involves a central non-coding region that may stretch about 300–600nt flanked by long terminal repeats about 300–400nt containing the HHR motif. They also have two sequences (a primer binding site (PBS) complementary to the tRNA-Met sequence and a poly-purine tract ( ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Subviral Agents
Virus classification is the process of naming viruses and placing them into a taxonomic system similar to the classification systems used for cellular organisms. Viruses are classified by phenotypic characteristics, such as morphology, nucleic acid type, mode of replication, host organisms, and the type of disease they cause. The formal taxonomic classification of viruses is the responsibility of the International Committee on Taxonomy of Viruses (ICTV) system, although the Baltimore classification system can be used to place viruses into one of seven groups based on their manner of mRNA synthesis. Specific naming conventions and further classification guidelines are set out by the ICTV. In 2021, the ICTV changed the International Code of Virus Classification and Nomenclature (ICVCN) to mandate a binomial format (genus, , , , species) for naming new viral species similar to that used for cellular organisms; the names of species coined prior to 2021 are gradually being convert ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Pospiviroidae
The Pospiviroidae are a ''incertae sedis'' family of ssRNA viroids with 5 genera and 39 species, including the first viroid to be discovered, PSTVd, which is part of genus Pospiviroid. Their secondary structure is key to their biological activity. The classification of this family is based on differences in the conserved central region sequence. ''Pospiviroidae'' replication occurs in an asymmetric fashion via host cell RNA polymerase, RNase, and RNA ligase. Its hosts are plants, specifically dicotyledons and some monocotyledons. The severity of the infection can vary from no effect to devastating and widespread damage to a population. This can also depend on the virus-host combination. Genome Members of the family Pospiviroidae have circular ssRNA of 246–375 nt. They assume rod-like or quasi-rod-like conformations containing a central conserved region (CCR) and a terminal conserved hairpin (TCH) or a terminal conserved region (TCR). The genome of viroids does not encode ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Pospiviroid Chloronani
''Pospiviroid'' is a genus of ssRNA viroids that infects plants, most commonly tubers. It belongs to the family ''Pospiviroidae The Pospiviroidae are a ''incertae sedis'' family of ssRNA viroids with 5 genera and 39 species, including the first viroid to be discovered, PSTVd, which is part of genus Pospiviroid. Their secondary structure is key to their biological act ...''. The first viroid discovered was a pospiviroid, the PSTVd species (potato spindle tuber viroid). Taxonomy Pospiviroid has 10 virus species References External links ICTV Report: ''Pospiviroidae'' Viroids Virus genera {{Virus-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Ribozymes
Ribozymes (ribonucleic acid enzymes) are RNA molecules that have the ability to catalyze specific biochemical reactions, including RNA splicing in gene expression, similar to the action of protein enzymes. The 1982 discovery of ribozymes demonstrated that RNA can be both genetic material (like DNA) and a biological catalyst (like protein enzymes), and contributed to the RNA world hypothesis, which suggests that RNA may have been important in the evolution of prebiotic self-replicating systems. The most common activities of natural or ''in vitro'' evolved ribozymes are the cleavage (or ligation) of RNA and DNA and peptide bond formation. For example, the smallest ribozyme known (GUGGC-3') can aminoacylate a GCCU-3' sequence in the presence of PheAMP. Within the ribosome, ribozymes function as part of the large subunit ribosomal RNA to link amino acids during protein synthesis. They also participate in a variety of RNA processing reactions, including RNA splicing, viral repl ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
