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TG3 (candidate Phylum)
Candidate phylum TG3 (aka candidate division Termite Group 3 or Chitinivibrionia Sorokin et al. 2014)NCBIChitinivibrionia Sorokin et al. 2014(class, syn. candidate division TG3) is a candidate phylum that is closely related to the phylum ''Fibrobacterota'' based on 16S rRNA gene phylogeny. Originally thought to be composed solely of sequences from termite Termites are a group of detritivore, detritophagous Eusociality, eusocial cockroaches which consume a variety of Detritus, decaying plant material, generally in the form of wood, Plant litter, leaf litter, and Humus, soil humus. They are dist ... guts, it was later found to be more widespread in nature. References {{Taxonbar, from=Q7670148 Bacteria phyla Termites Candidatus taxa ...
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Candidate Division
A candidate division, candidate phylum or candidate division-level is a lineage of prokaryotic organisms for which until recently no cultured representatives have been found, but evidence of the existence of the clade has been obtained by 16S rRNA and metagenomic analysis of environmental samples. The term Candidatus in fact means a taxon for which there is insufficient information to call it a new species according to the International Code of Nomenclature of Bacteria. Examples of Candidate division bacteria * Candidate division TM7 (Saccharibacteria) * Poribacteria * TG3 (candidate phylum) (Chitinivibrionia) See also * Metagenomics * Cloning * DNA sequencing DNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA. It includes any method or technology that is used to determine the order of the four bases: adenine, thymine, cytosine, and guanine. The ... References {{reflist Candidatus taxa Bacteria phyla Archa ...
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Phylum
In biology, a phylum (; : phyla) is a level of classification, or taxonomic rank, that is below Kingdom (biology), kingdom and above Class (biology), class. Traditionally, in botany the term division (taxonomy), division has been used instead of phylum, although the International Code of Nomenclature for algae, fungi, and plants accepts the terms as equivalent. Depending on definitions, the animal kingdom Animalia contains about 31 phyla, the plant kingdom Plantae contains about 14 phyla, and the fungus kingdom Fungi contains about eight phyla. Current research in phylogenetics is uncovering the relationships among phyla within larger clades like Ecdysozoa and Embryophyta. General description The term phylum was coined in 1866 by Ernst Haeckel from the Greek (, "race, stock"), related to (, "tribe, clan"). Haeckel noted that species constantly evolved into new species that seemed to retain few consistent features among themselves and therefore few features that distinguishe ...
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Fibrobacterota
Fibrobacterota is a small bacterial phylum which includes many of the major rumen bacteria, allowing for the degradation of plant-based cellulose in ruminant animals. Members of this phylum were categorized in other phyla. The genus '' Fibrobacter'' (the only genus of Fibrobacterota) was removed from the genus '' Bacteroides'' in 1988. Phylogeny and comparative genomic studies Although ''Fibrobacterota'' is currently recognized as a distinct phylum, phylogenetic studies based RpoC and Gyrase B protein sequences, indicate that ''Fibrobacter succinogenes'' is closely related to the species from the phyla ''Bacteroidetes'' and ''Chlorobi''. The species from these three phyla also branch in the same position based upon conserved signature indels in a number of important proteins. Lastly and most importantly, comparative genomic studies have identified two conserved signature indels (a 5-7 amino acid insert in the RpoC protein and a 13-16 amino acid insertion in serine hydroxymeth ...
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16S Ribosomal RNA
16S ribosomal RNA (or 16 S rRNA) is the RNA component of the 30S subunit of a prokaryotic ribosome ( SSU rRNA). It binds to the Shine-Dalgarno sequence and provides most of the SSU structure. The genes coding for it are referred to as 16S rRNA genes and are used in reconstructing phylogenies, due to the slow rates of evolution of this region of the gene. Carl Woese and George E. Fox were two of the people who pioneered the use of 16S rRNA in phylogenetics in 1977. Multiple sequences of the 16S rRNA gene can exist within a single bacterium. Terminology The descriptor ''16S'' refers to the size of these ribosomal subunits as reflected indirectly by the speed at which they sediment when samples are centrifuged. Thus ''16S'' means 16 Svedburg units. Functions * Like the large (23S) ribosomal RNA, it has a structural role, acting as a scaffold defining the positions of the ribosomal proteins. * The 3-end contains the anti- Shine-Dalgarno sequence, which binds upstream ...
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Termite
Termites are a group of detritivore, detritophagous Eusociality, eusocial cockroaches which consume a variety of Detritus, decaying plant material, generally in the form of wood, Plant litter, leaf litter, and Humus, soil humus. They are distinguished by their moniliform antennae and the soft-bodied, unpigmented worker caste for which they have been commonly termed "white ants"; however, they are not ants but highly Apomorphy and synapomorphy, derived cockroaches. About 2,997 extant species are currently described, 2,125 of which are members of the family Termitidae. Termites comprise the infraorder Isoptera, or alternatively the Taxonomic rank#All ranks, epifamily Termitoidae, within the order Blattodea (the cockroaches). Termites were once classified in a separate Order (biology), order from cockroaches, but recent phylogenetic studies indicate that they evolved from cockroaches, as they are deeply nested within the group, and the sister group to wood-eating cockroaches of t ...
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Bacteria Phyla
Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit the air, soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in mutualistic, commensal and para ...
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Termites
Termites are a group of detritophagous eusocial cockroaches which consume a variety of decaying plant material, generally in the form of wood, leaf litter, and soil humus. They are distinguished by their moniliform antennae and the soft-bodied, unpigmented worker caste for which they have been commonly termed "white ants"; however, they are not ants but highly derived cockroaches. About 2,997 extant species are currently described, 2,125 of which are members of the family Termitidae. Termites comprise the infraorder Isoptera, or alternatively the epifamily Termitoidae, within the order Blattodea (the cockroaches). Termites were once classified in a separate order from cockroaches, but recent phylogenetic studies indicate that they evolved from cockroaches, as they are deeply nested within the group, and the sister group to wood-eating cockroaches of the genus '' Cryptocercus''. Previous estimates suggested the divergence took place during the Jurassic or Triassic ...
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