SnpEff
SnpEff is an Open-source software, open source tool that performs DNA annotation, annotation on Genetic variation, genetic variants and predicts their effects on genes by using an interval forest approach. This program takes pre-determined variants listed in a data file that contains the nucleotide change and its position and predicts if the variants are Deleterious mutation, deleterious. This program was first developed to predict effects of single nucleotide Polymorphism (biology), polymorphisms (SNPs) in ''Drosophila''. As of July 2024, this SnpEff paper has been cited 10076 times. SnpEff has been used for various applications – from personalized medicine, to profiling bacteria. This annotation and prediction software can be compared to Tute Genomics, ANNOVAR and Ensembl Genomes#Variant Effect Predictor, Variant Effect Predictor, but each use different nomenclatures. Usage SnpEff has the capability to work on Windows, Unix or Mac systems, although the installation step ...
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