Sarcina (genus)
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Sarcina (genus)
''Sarcina'' is a genus of gram-positive cocci bacteria in the family Clostridiaceae. A synthesizer of microbial cellulose, various members of the genus are human flora and may be found in the skin and large intestine. The genus takes its name from the Latin word "sarcina," meaning pack or bundle, after the cuboidal (2x2x2) cellular associations they form during division along three planes. The genus's type species is '' Sarcina ventriculi'', a variety found on the surface of cereal seeds, in soil, mud, and in the stomachs of humans, rabbits, and guinea pigs. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI) Species * '' Sarcina aurantiaca'' * '' Sarcina lutea'' has been reclassified to '' Micrococcus luteus'' * '' Sarcina troglodytae'' is a chimpanzee pathogen See also * List of bacterial orders * List of bacteria genera This article lists the ...
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Stomach
The stomach is a muscular, hollow organ in the upper gastrointestinal tract of Human, humans and many other animals, including several invertebrates. The Ancient Greek name for the stomach is ''gaster'' which is used as ''gastric'' in medical terms related to the stomach. The stomach has a dilated structure and functions as a vital organ in the digestive system. The stomach is involved in the gastric phase, gastric phase of digestion, following the cephalic phase in which the sight and smell of food and the act of chewing are stimuli. In the stomach a chemical breakdown of food takes place by means of secreted digestive enzymes and gastric acid. It also plays a role in regulating gut microbiota, influencing digestion and overall health. The stomach is located between the esophagus and the small intestine. The pyloric sphincter controls the passage of partially digested food (chyme) from the stomach into the duodenum, the first and shortest part of the small intestine, where p ...
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Sarcina
The ''sarcina'' was the marching pack carried by Roman legionaries, the heavy infantry of the Roman legions. Most of a legionary's equipment other than his arms and armour would, in early times, have been consigned to a baggage train and borne by mules and carts. The soldiers were also expected to carry much of their rations and equipment themselves. This was done to reduce the size of the baggage train and increase the mobility of the army by allowing the soldiers to move strategically (i.e., quickly) independently of the train. Such was the load of the soldiers that they became known as " Marius' mules". The appearance of the marching pack is known from illustrations on Trajan's Column. Here it can be seen that a legionary's ''sarcina'' was carried on a pole called a '' furca'' and would have included: * '' Loculus'' – a satchel * Cloak bag * Cooking pot * ''Patera'' – mess tin * Netted object However, this was certainly not the limit of the soldiers load. Time a ...
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Sarcina Troglodytae
The ''sarcina'' was the marching pack carried by Roman legionaries, the heavy infantry of the Roman legions. Most of a legionary's equipment other than his arms and armour would, in early times, have been consigned to a baggage train and borne by mules and carts. The soldiers were also expected to carry much of their rations and equipment themselves. This was done to reduce the size of the baggage train and increase the mobility of the army by allowing the soldiers to move strategically (i.e., quickly) independently of the train. Such was the load of the soldiers that they became known as " Marius' mules". The appearance of the marching pack is known from illustrations on Trajan's Column. Here it can be seen that a legionary's ''sarcina'' was carried on a pole called a '' furca'' and would have included: * '' Loculus'' – a satchel * Cloak bag * Cooking pot * ''Patera'' – mess tin * Netted object However, this was certainly not the limit of the soldiers load. Time an ...
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Micrococcus Luteus
''Micrococcus luteus'' is a Gram-positive to Gram-variable, nonmotile, tetrad-arranging, pigmented, saprotrophic coccus bacterium in the family Micrococcaceae. It is urease and catalase positive. An obligate aerobe, ''M. luteus'' is found in soil, dust, water and air, and as part of the normal microbiota of the mammalian skin. The bacterium also colonizes the human mouth, mucosae, oropharynx and upper respiratory tract. ''Micrococcus luteus'' is generally harmless but can become an opportunistic pathogen in immunocompromised people or those with indwelling catheters. It resists antibiotic treatment by slowing of major metabolic processes and induction of unique genes. Its genome has a high G + C content. ''Micrococcus luteus'' is coagulase negative, bacitracin susceptible, and forms bright yellow colonies on nutrient agar (hence its scientific species name ''luteus'' which means "yellow" in Latin). ''Micrococcus luteus'' has been shown to survive in oligotrophic environment ...
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Sarcina Lutea
The ''sarcina'' was the marching pack carried by Roman legionaries, the heavy infantry of the Roman legions. Most of a legionary's equipment other than his arms and armour would, in early times, have been consigned to a baggage train and borne by mules and carts. The soldiers were also expected to carry much of their rations and equipment themselves. This was done to reduce the size of the baggage train and increase the mobility of the army by allowing the soldiers to move strategically (i.e., quickly) independently of the train. Such was the load of the soldiers that they became known as " Marius' mules". The appearance of the marching pack is known from illustrations on Trajan's Column. Here it can be seen that a legionary's ''sarcina'' was carried on a pole called a '' furca'' and would have included: * '' Loculus'' – a satchel * Cloak bag * Cooking pot * ''Patera'' – mess tin * Netted object However, this was certainly not the limit of the soldiers load. Time an ...
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Clostridium Perfringens
''Clostridium perfringens'' (formerly known as ''C. welchii'', or ''Bacillus welchii'') is a Gram-positive, bacillus (rod-shaped), anaerobic, spore-forming pathogenic bacterium of the genus '' Clostridium''. ''C. perfringens'' is ever-present in nature and can be found as a normal component of decaying vegetation, marine sediment, the intestinal tract of humans and other vertebrates, insects, and soil. It has the shortest reported generation time of any organism at 6.3 minutes in thioglycolate medium. ''Clostridium perfringens'' is one of the most common causes of food poisoning in the United States, alongside norovirus, ''Salmonella'', '' Campylobacter'', and ''Staphylococcus aureus''. However, it can sometimes be ingested and cause no harm. Infections induced by ''C. perfringens'' are associated with tissue necrosis, bacteremia, emphysematous cholecystitis, and gas gangrene, which is also known as clostridial myonecrosis. The specific name, ''perfringens,'' is derived ...
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Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, updating names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as automated and manual curation of the taxonomy. An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. The GTDB is incorporated into the '' Bergey's Manual of Systematics of Archaea and Bacteria'' in 2019 as its phylogenomic resource. Methodology The genomes used to construct the phyloge ...
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The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded off for size and many phylum level clades are not correctly resolved (such as the Firmicutes). (Eukaryote ...
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National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBank DNA seque ...
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List Of Prokaryotic Names With Standing In Nomenclature
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service and since 2022 LPSN is interconnected with the Type (Strain) Genome Server (TYGS), DSMZ's high-throughput platform for accurate genome-based taxonomy. See also * Code of Nomenclature of Prokaryotes Described from Sequence Data References External links List of Prokaryotic names with Standing in Nomenclature
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Guinea Pig
The guinea pig or domestic guinea pig (''Cavia porcellus''), also known as the cavy or domestic cavy ( ), is a species of rodent belonging to the genus ''Cavia'', family Caviidae. Animal fancy, Breeders tend to use the name "cavy" for the animal, but "guinea pig" is more commonly used in scientific and laboratory contexts. Despite their name, guinea pigs are not native to Guinea (region), Guinea, nor are they closely related to suidae, pigs. Instead, they originated in the Andes region of South America, where wild guinea pigs can still be found today. Studies based on biochemistry and DNA Hybrid (biology), hybridization suggest they are domestication, domesticated animals that do not exist naturally in the wild, but are descendants of a closely related cavy species such as ''Montane guinea pig, C. tschudii''. Originally, they were domesticated as livestock (source of meat) in the Andean region and are still consumed in some parts of the world. In Western society, the guin ...
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