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R Markdown
RStudio IDE (or RStudio) is an integrated development environment for R, a programming language for statistical computing and graphics. It's available in two formats: RStudio Desktop is a regular desktop application while RStudio Server runs on a remote server and allows accessing RStudio using a web browser. The RStudio IDE is a product of Posit PBC (formerly RStudio PBC, formerly RStudio Inc.). Reproducible analyses with vignettes A strength of RStudio is its support for reproducible analyses with R Markdown vignettes. These allow users to mix text with code in R, Python, Julia, shell scripts, SQL, Stan, JavaScript, C, C++, Fortran, and others, similar to Jupyter Notebooks. R Markdown can be used to create dynamic reports that are automatically updated when new data become available. These reports can also be exported in various formats, including HTML, PDF, Microsoft Word, and LaTeX, with templates specific to the requirements of many scientific journals. R Ma ...
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MacOS Catalina
macOS Catalina (version 10.15) is the sixteenth software versioning, major release of macOS, Apple Inc.'s desktop operating system for Macintosh computers. It is the successor to macOS Mojave and was announced at WWDC 2019 on June 3, 2019 and released to the public on October 7, 2019. Catalina is the first version of macOS to support only 64-bit applications and the first to include Activation Lock. It is also the last version of macOS to have the major version number be 10.x; its successor, MacOS Big Sur, Big Sur, released on November 12, 2020, is version 11. In order to increase web compatibility, Safari (web browser), Safari, Chromium (web browser), Chromium and Firefox have frozen the OS in the user agent running in subsequent releases of macOS at 10.15.7 Catalina. The operating system is named after Santa Catalina Island (California), Santa Catalina Island, which is located off the coast of southern California. macOS Catalina is the final version of macOS that supports th ...
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Programming Language
A programming language is a system of notation for writing computer programs. Programming languages are described in terms of their Syntax (programming languages), syntax (form) and semantics (computer science), semantics (meaning), usually defined by a formal language. Languages usually provide features such as a type system, Variable (computer science), variables, and mechanisms for Exception handling (programming), error handling. An Programming language implementation, implementation of a programming language is required in order to Execution (computing), execute programs, namely an Interpreter (computing), interpreter or a compiler. An interpreter directly executes the source code, while a compiler produces an executable program. Computer architecture has strongly influenced the design of programming languages, with the most common type (imperative languages—which implement operations in a specified order) developed to perform well on the popular von Neumann architecture. ...
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HTML
Hypertext Markup Language (HTML) is the standard markup language for documents designed to be displayed in a web browser. It defines the content and structure of web content. It is often assisted by technologies such as Cascading Style Sheets (CSS) and scripting languages such as JavaScript, a programming language. Web browsers receive HTML documents from a web server or from local storage and browser engine, render the documents into multimedia web pages. HTML describes the structure of a web page Semantic Web, semantically and originally included cues for its appearance. HTML elements are the building blocks of HTML pages. With HTML constructs, HTML element#Images and objects, images and other objects such as Fieldset, interactive forms may be embedded into the rendered page. HTML provides a means to create structured documents by denoting structural semantics for text such as headings, paragraphs, lists, Hyperlink, links, quotes, and other items. HTML elements are delineated ...
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Project Jupyter
Project Jupyter (pronounced "Jupiter") is a project to develop open-source software, Open standard, open standards, and services for interactive computing across multiple Programming language, programming languages. It was spun off from IPython in 2014 by Fernando Pérez (software developer), Fernando Pérez and Brian Granger. Project Jupyter's name is a reference to the three core programming languages supported by Jupyter, which are Julia (programming language), Julia, Python (programming language), Python and R (programming language), R. Its name and logo are an Homage (arts), homage to Galileo Galilei, Galileo's discovery of the moons of Jupiter, as documented in notebooks attributed to Galileo. Jupyter is financially sponsored by the Jupyter Foundation. History The first version of Notebooks for IPython was released in 2011 by a team including Fernando Pérez, Brian Granger, and Min Ragan-Kelley. In 2014, Pérez announced a spin-off project from IPython called Project J ...
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C (programming Language)
C (''pronounced'' '' – like the letter c'') is a general-purpose programming language. It was created in the 1970s by Dennis Ritchie and remains very widely used and influential. By design, C's features cleanly reflect the capabilities of the targeted Central processing unit, CPUs. It has found lasting use in operating systems code (especially in Kernel (operating system), kernels), device drivers, and protocol stacks, but its use in application software has been decreasing. C is commonly used on computer architectures that range from the largest supercomputers to the smallest microcontrollers and embedded systems. A successor to the programming language B (programming language), B, C was originally developed at Bell Labs by Ritchie between 1972 and 1973 to construct utilities running on Unix. It was applied to re-implementing the kernel of the Unix operating system. During the 1980s, C gradually gained popularity. It has become one of the most widely used programming langu ...
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Stan (software)
Stan is a probabilistic programming language for statistical inference written in C++.Stan Development Team. 2015Stan Modeling Language User's Guide and Reference Manual, Version 2.9.0/ref> The Stan language is used to specify a (Bayesian) statistical model with an imperative program calculating the log probability density function. Stan is licensed under the New BSD License. Stan is named in honour of Stanislaw Ulam, pioneer of the Monte Carlo method. Stan was created by a development team consisting of 52 members that includes Andrew Gelman, Bob Carpenter, Daniel Lee, Ben Goodrich, and others. Example A simple linear regression model can be described as y_n = \alpha + \beta x_n + \epsilon_n, where \epsilon_n \sim \text (0, \sigma). This can also be expressed as y_n \sim \text(\alpha + \beta X_n, \sigma). The latter form can be written in Stan as the following: data parameters model Interfaces The Stan language itself can be accessed through several interfaces: ...
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Julia (programming Language)
Julia is a high-level programming language, high-level, general-purpose programming language, general-purpose dynamic programming language, dynamic programming language, designed to be fast and productive, for e.g. data science, artificial intelligence, machine learning, modeling and simulation, most commonly used for numerical analysis and computational science. Distinctive aspects of Julia's design include a type system with parametric polymorphism and the use of multiple dispatch as a core programming paradigm, a default just-in-time compilation, just-in-time (JIT) compiler (with support for ahead-of-time compilation) and an tracing garbage collection, efficient (multi-threaded) garbage collection implementation. Notably Julia does not support classes with encapsulated methods and instead it relies on structs with generic methods/functions not tied to them. By default, Julia is run similarly to scripting languages, using its runtime, and allows for read–eval–print loop, i ...
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Python (programming Language)
Python is a high-level programming language, high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation. Python is type system#DYNAMIC, dynamically type-checked and garbage collection (computer science), garbage-collected. It supports multiple programming paradigms, including structured programming, structured (particularly procedural programming, procedural), object-oriented and functional programming. It is often described as a "batteries included" language due to its comprehensive standard library. Guido van Rossum began working on Python in the late 1980s as a successor to the ABC (programming language), ABC programming language, and he first released it in 1991 as Python 0.9.0. Python 2.0 was released in 2000. Python 3.0, released in 2008, was a major revision not completely backward-compatible with earlier versions. Python 2.7.18, released in 2020, was the last release of ...
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Karl Popper
Sir Karl Raimund Popper (28 July 1902 – 17 September 1994) was an Austrian–British philosopher, academic and social commentator. One of the 20th century's most influential philosophers of science, Popper is known for his rejection of the classical inductivist views on the scientific method in favour of Falsifiability, empirical falsification, and for founding the Department of Philosophy at the London School of Economics. According to Popper, a theory in the empirical sciences can never be proven, but it can be falsified, meaning that it can (and should) be scrutinised with decisive experiments. Popper was opposed to the classical Justification (epistemology), justificationist account of knowledge, which he replaced with "the first non-justificational philosophy of criticism in the history of philosophy", namely critical rationalism. In political discourse, he is known for his vigorous defence of liberal democracy and the principles of social criticism that he believed mad ...
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The Logic Of Scientific Discovery
''The Logic of Scientific Discovery'' is a 1959 book about the philosophy of science by the philosopher Karl Popper. Popper rewrote his book in English from the 1934 (imprint '1935') German original, titled ''Logik der Forschung. Zur Erkenntnistheorie der modernen Naturwissenschaft'', which literally translates as, "Logic of Research: On the Epistemology of Modern Natural Science"'. Summary Popper argues that science should adopt a methodology based on falsifiability, because no number of experiments can ever prove a theory, but a reproducible experiment or observation can refute one. According to Popper: "non-reproducible single occurrences are of no significance to science. Thus a few stray basic statements contradicting a theory will hardly induce us to reject it as falsified. We shall take it as falsified only if we discover a reproducible effect which refutes the theory". Popper argues that science should adopt a methodology based on "an ''asymmetry'' between verifiability ...
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Reproducibility
Reproducibility, closely related to replicability and repeatability, is a major principle underpinning the scientific method. For the findings of a study to be reproducible means that results obtained by an experiment or an observational study or in a statistical analysis of a data set should be achieved again with a high degree of reliability when the study is replicated. There are different kinds of replication but typically replication studies involve different researchers using the same methodology. Only after one or several such successful replications should a result be recognized as scientific knowledge. History The first to stress the importance of reproducibility in science was the Anglo-Irish chemist Robert Boyle, in England in the 17th century. Boyle's air pump was designed to generate and study vacuum, which at the time was a very controversial concept. Indeed, distinguished philosophers such as René Descartes and Thomas Hobbes denied the very possibility of vacuum ...
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