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Pseudomonas Chlororaphis
''Pseudomonas chlororaphis'' is a bacterium used as a soil inoculant in agriculture and horticulture. It can act as a biocontrol agent against certain fungal plant pathogens via production of phenazine-type antibiotics. Based on 16S rRNA analysis, similar species have been placed in its group. A comparative genomic and phylogenomic study in 2020, analyzed 494 complete genomes from the entire ''Pseudomonas'' genus, with 43 of them being ''P. chlororaphis'' strains. In this study, the ''P. chlororaphis'' species was determined, based on its monophyly and criterion of Average Nucleotide Identity. This species lies within the wider ''P. fluorescens'' species complex, as determined by. The protein count and GC content of the strains of this species ranged between 5599 and 6401 (average: 6076) and between 61.9 and 64% (average: 62.8%), respectively. In addition, the 43 ''P. chlororaphis'' proteomes contained 3587 core proteins (shared among all strains of the species), with 11 core pr ...
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David Hendricks Bergey
David Hendricks Bergey (1860-1937) was an American bacteriologist. He studied at University of Pennsylvania, where he obtained his Bachelor of Science and Doctor of Medicine degrees in 1884. He practiced medicine in North Wales, Pennsylvania, until 1893. He then joined the university's hygiene laboratory, where he taught hygiene and bacteriology. He led the laboratory from 1929 until his retirement in 1932. During WWI he was on academic leave of absence from 1917 to 1919, when he served in the United States Army Medical Reserve Corps as chief of the laboratory staff at Fort Oglethorpe (Fort Oglethorpe, Georgia), Fort Oglethorpe. His ''Principles of Hygiene'' was first published in 1901 and went through seven editions. He was chairman of the Editorial Board for the first edition of Bergey's Manual of Determinative Bacteriology, published in 1923. The Determinative Manual has subsequently been published in a further eight editions, and Bergey's Manual Trust is currently publishing th ...
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Bacterium
Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit the air, soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in mutualistic, commensal and ...
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Soil Inoculant
Microbial inoculants, also known as soil inoculants or bioinoculants, are agricultural amendments that use beneficial rhizosphericic or endophytic microbes to promote plant health. Many of the microbes involved form symbiotic relationships with the target crops where both parties benefit ( mutualism). While microbial inoculants are applied to improve plant nutrition, they can also be used to promote plant growth by stimulating plant hormone production. Although bacterial and fungal inoculants are common, inoculation with archaea to promote plant growth is being increasingly studied. Research into the benefits of inoculants in agriculture extends beyond their capacity as biofertilizers. Microbial inoculants can induce systemic acquired resistance (SAR) of crop species to several common crop diseases (provides resistance against pathogens). So far SAR has been demonstrated for powdery mildew ( ''Blumeria graminis'' f. sp. ''hordei'', Heitefuss, 2001), take-all ( ''Gaeumannomyces gr ...
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Agriculture
Agriculture encompasses crop and livestock production, aquaculture, and forestry for food and non-food products. Agriculture was a key factor in the rise of sedentary human civilization, whereby farming of domesticated species created food surpluses that enabled people to live in the cities. While humans started gathering grains at least 105,000 years ago, nascent farmers only began planting them around 11,500 years ago. Sheep, goats, pigs, and cattle were domesticated around 10,000 years ago. Plants were independently cultivated in at least 11 regions of the world. In the 20th century, industrial agriculture based on large-scale monocultures came to dominate agricultural output. , small farms produce about one-third of the world's food, but large farms are prevalent. The largest 1% of farms in the world are greater than and operate more than 70% of the world's farmland. Nearly 40% of agricultural land is found on farms larger than . However, five of every six farm ...
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Horticulture
Horticulture (from ) is the art and science of growing fruits, vegetables, flowers, trees, shrubs and ornamental plants. Horticulture is commonly associated with the more professional and technical aspects of plant cultivation on a smaller and more controlled scale than agronomy. There are various divisions of horticulture because plants are grown for a variety of purposes. These divisions include, but are not limited to: propagation, arboriculture, landscaping, floriculture and turf maintenance. For each of these, there are various professions, aspects, tools used and associated challenges -- each requiring highly specialized skills and knowledge on the part of the horticulturist. Typically, horticulture is characterized as the ornamental, small-scale and non-industrial cultivation of plants; horticulture is distinct from gardening by its emphasis on scientific methods, plant breeding, and technical cultivation practices, while gardening, even at a professional level, tends ...
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Biocontrol
Biological control or biocontrol is a method of pest control, controlling pests, whether pest animals such as insects and mites, weeds, or pathogens affecting animals or phytopathology, plants by bioeffector, using other organisms. It relies on predation, parasitism, herbivory, or other natural mechanisms, but typically also involves an active human management role. It can be an important component of integrated pest management (IPM) programs. There are three basic strategies for biological control: classical (importation), where a natural enemy of a pest is introduced in the hope of achieving control; inductive (augmentation), in which a large population of natural enemies are administered for quick pest control; and inoculative (conservation), in which measures are taken to maintain natural enemies through regular reestablishment. Natural enemies of insects play an important part in limiting the densities of potential pests. Biological control agents such as these include Pr ...
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Fungus
A fungus (: fungi , , , or ; or funguses) is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and mold (fungus), molds, as well as the more familiar mushrooms. These organisms are classified as one of the kingdom (biology)#Six kingdoms (1998), traditional eukaryotic kingdoms, along with Animalia, Plantae, and either Protista or Protozoa and Chromista. A characteristic that places fungi in a different kingdom from plants, bacteria, and some protists is chitin in their cell walls. Fungi, like animals, are heterotrophs; they acquire their food by absorbing dissolved molecules, typically by secreting digestive enzymes into their environment. Fungi do not photosynthesize. Growth is their means of motility, mobility, except for spores (a few of which are flagellated), which may travel through the air or water. Fungi are the principal decomposers in ecological systems. These and other differences place fungi in a single group of related o ...
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Antibiotic
An antibiotic is a type of antimicrobial substance active against bacteria. It is the most important type of antibacterial agent for fighting pathogenic bacteria, bacterial infections, and antibiotic medications are widely used in the therapy, treatment and antibiotic prophylaxis, prevention of such infections. They may either bactericide, kill or bacteriostatic agent, inhibit the growth of bacteria. A limited number of antibiotics also possess antiprotozoal activity. Antibiotics are not effective against viruses such as the ones which cause the common cold or influenza. Drugs which inhibit growth of viruses are termed antiviral drugs or antivirals. Antibiotics are also not effective against fungi. Drugs which inhibit growth of fungi are called antifungal drugs. Sometimes, the term ''antibiotic''—literally "opposing life", from the Greek language, Greek roots ἀντι ''anti'', "against" and βίος ''bios'', "life"—is broadly used to refer to any substance used against ...
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RRNA
Ribosomal ribonucleic acid (rRNA) is a type of non-coding RNA which is the primary component of ribosomes, essential to all cells. rRNA is a ribozyme which carries out protein synthesis in ribosomes. Ribosomal RNA is transcribed from ribosomal DNA (rDNA) and then bound to ribosomal proteins to form SSU rRNA, small and LSU rRNA, large ribosome subunits. rRNA is the physical and mechanical factor of the ribosome that forces transfer RNA (tRNA) and messenger RNA (mRNA) to process and Translation (biology), translate the latter into proteins. Ribosomal RNA is the predominant form of RNA found in most cells; it makes up about 80% of cellular RNA despite never being translated into proteins itself. Ribosomes are composed of approximately 60% rRNA and 40% ribosomal proteins, though this ratio differs between Prokaryote, prokaryotes and Eukaryote, eukaryotes. Structure Although the primary structure of rRNA sequences can vary across organisms, Base pair, base-pairing within these sequ ...
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Pseudomonas
''Pseudomonas'' is a genus of Gram-negative bacteria belonging to the family Pseudomonadaceae in the class Gammaproteobacteria. The 348 members of the genus demonstrate a great deal of metabolic diversity and consequently are able to colonize a wide range of niches and hosts. Their ease of culture ''in vitro'' and availability of an increasing number of ''Pseudomonas'' strain genome sequences has made the genus an excellent focus for scientific research; the best studied species include '' P. aeruginosa'' in its role as an opportunistic human pathogen, the plant pathogen '' P. syringae'', the soil bacterium '' P. putida'', and the plant growth-promoting '' P. fluorescens, P. lini, P. migulae'', and '' P. graminis''. Because of their widespread occurrence in water and plant seeds such as dicots, the pseudomonads were observed early in the history of microbiology. The generic name ''Pseudomonas'' created for these organisms was defined in rather vague terms by Walter Migula i ...
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Pseudomonas Aurantiaca
''Pseudomonas chlororaphis'' subsp. ''aurantiaca'' is an orange Gram-negative soil bacterium, originally isolated from the rhizosphere soil of potatoes. It produces di-2,4-diacetylfluoroglucylmethan, which is antibiotically active against Gram-positive organisms. It has shown potential for use as a biocontrol agent against plant-pathogenic microbes. Originally described as ''Pseudomonas aurantiaca'' based on 16S rRNA analysis it has been placed in the '' P. chlororaphis'' group. Isolates found in Ukraine living in root symbiosis produce 2,4-Diacetylphloroglucinol to control ''Fusarium oxysporum ''Fusarium oxysporum'' (Schlecht as emended by Snyder and Hansen), an ascomycete fungus, comprises all the species, varieties and forms recognized by Wollenweber and Reinking within an infrageneric grouping called section Elegans. It is part of ...''. References Pseudomonadales Bacteria described in 1948 {{Pseudomonadales-stub ...
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Pseudomonas Aureofaciens
''Pseudomonas aureofaciens'' is a yellowish, aerobic, Gram-negative, motile, polar-flagellated, rod-shaped bacterium isolated from clay near the River Maas. Based on 16S rRNA Ribosomal ribonucleic acid (rRNA) is a type of non-coding RNA which is the primary component of ribosomes, essential to all cells. rRNA is a ribozyme which carries out protein synthesis in ribosomes. Ribosomal RNA is transcribed from ribosomal ... analysis, ''P. aureofaciens'' has been placed in the '' P. chlororaphis'' group. References Pseudomonadales Bacteria described in 1956 {{Pseudomonadales-stub ...
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