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Methanocalculus
''Methanocalculus'' is a genus of the Methanomicrobiales, and is known to include methanogens. The genome of ''Methanocalculus'' is somewhat different from other genera of methanogenic archaea, with less than 90% 16S ribosomal RNA similarity. The species within ''Methanocalculus'' also have a greater tolerance to salt than other microorganisms, and they can live at salt concentrations as high as 125 g/L. Some species within ''Methanocalculus'' are neutrophiles, and ''Methanocalculus natronophilus'', discovered in 2013, is a strict alkaliphile. Nomenclature The name "Methanocalculus" has Latin roots: "methano" for methane and "calculus" for gravel. Overall, it means ''gravel-shaped organism that produces methane.'' Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). See also * List of Archaea genera This article lists the genera of the Archaea. T ...
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Methanocalculus Natronophilus
''Methanocalculus'' is a genus of the Methanomicrobiales, and is known to include methanogens. The genome of ''Methanocalculus'' is somewhat different from other genera of methanogenic archaea, with less than 90% 16S ribosomal RNA similarity. The species within ''Methanocalculus'' also have a greater tolerance to salt than other microorganisms, and they can live at salt concentrations as high as 125 g/L. Some species within ''Methanocalculus'' are neutrophiles, and '' Methanocalculus natronophilus'', discovered in 2013, is a strict alkaliphile. Nomenclature The name "Methanocalculus" has Latin roots: "methano" for methane and "calculus" for gravel. Overall, it means ''gravel-shaped organism that produces methane.'' Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the United State ...
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Methanocalculus Chunghsingensis
''Methanocalculus'' is a genus of the Methanomicrobiales, and is known to include methanogens. The genome of ''Methanocalculus'' is somewhat different from other genera of methanogenic archaea, with less than 90% 16S ribosomal RNA similarity. The species within ''Methanocalculus'' also have a greater tolerance to salt than other microorganisms, and they can live at salt concentrations as high as 125 g/L. Some species within ''Methanocalculus'' are neutrophiles, and ''Methanocalculus natronophilus'', discovered in 2013, is a strict alkaliphile. Nomenclature The name "Methanocalculus" has Latin roots: "methano" for methane and "calculus" for gravel. Overall, it means ''gravel-shaped organism that produces methane.'' Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). See also * List of Archaea genera This article lists the genera of the Archaea. T ...
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Methanocalculus Pumilus
''Methanocalculus'' is a genus of the Methanomicrobiales, and is known to include methanogens. The genome of ''Methanocalculus'' is somewhat different from other genera of methanogenic archaea, with less than 90% 16S ribosomal RNA similarity. The species within ''Methanocalculus'' also have a greater tolerance to salt than other microorganisms, and they can live at salt concentrations as high as 125 g/L. Some species within ''Methanocalculus'' are neutrophiles, and ''Methanocalculus natronophilus'', discovered in 2013, is a strict alkaliphile. Nomenclature The name "Methanocalculus" has Latin roots: "methano" for methane and "calculus" for gravel. Overall, it means ''gravel-shaped organism that produces methane.'' Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the United States ...
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Methanocalculus Halotolerans
''Methanocalculus halotolerans'' is a species of archaeon, the type species of its genus. It is an irregular coccoid hydrogenotrophic methanogen. Its type strain is SEBR 4845T (= OCM 470T). Nomenclature The name "Methanocalculus" has Latin roots, "methano" for methane Methane ( , ) is a chemical compound with the chemical formula (one carbon atom bonded to four hydrogen atoms). It is a group-14 hydride, the simplest alkane, and the main constituent of natural gas. The relative abundance of methane on Ear ... and "calculus" for small round structure, "halo" for salt and "tolerans" for tolerant. In all, the name means ''salt-tolerant organism with a gravelly body that produces methane.'' References Further reading * *Schaechter, Moselio. Encyclopedia of microbiology. Academic Press, 2009. External links *LPSN
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Methanocorpusculaceae
In taxonomy, the Methanocorpusculaceae are a family of microbes within the order Methanomicrobiales. It contains exactly one genus, ''Methanocorpusculum''. The species within ''Methanocorpusculum'' were first isolated from anaerobic digesters and anaerobic wastewater treatment plants. In the wild, they prefer freshwater environments. Unlike many other methanogenic archaea, they do not require high temperatures or extreme salt concentrations to live and grow. Nomenclature The name ''Methanocorpusculaceae'' has Latin roots. Overall, it means ''family of bodies that produce methane''. Description and metabolism The cells within this species are coccoid, small and irregular. They are Gram-negatives and not very motile. They reduce carbon dioxide to methane using hydrogen, but they can also use formate and secondary alcohols. They cannot use acetate or methylamines. They grow most quickly at 30–40 °C. Phylogeny The currently accepted taxonomy is based on the List of P ...
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List Of Archaea Genera
This article lists the genera of the Archaea. The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI). Phylogeny National Center for Biotechnology Information (NCBI) taxonomy was initially used to decorate the genome tree via tax2tree. The 16S rRNA-based Greengenes taxonomy is used to supplement the taxonomy particularly in regions of the tree with no cultured representatives. List of Prokaryotic names with Standing in Nomenclature (LPSN) is used as the primary taxonomic authority for establishing naming priorities. Taxonomic ranks are normalised using phylorank and the taxonomy manually curated to remove polyphyletic groups. Cladogram was taken from the GTDB release 07-RS207 (8th April 2022). The position of clades with a "question mark" are based on the additional phylogeny of the 16S rRNA-based LTP_12_2021 by The All-Species Living Tree Project. Phylum " Altarch ...
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The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB Project, ARB, SILVA rRNA database project, and List of Prokaryotic names with Standing in Nomenclature, LPSN, with the aim of assembling a database of 16S ribosomal RNA, 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S ribosomal RNA, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded ...
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Methane
Methane ( , ) is a chemical compound with the chemical formula (one carbon atom bonded to four hydrogen atoms). It is a group-14 hydride, the simplest alkane, and the main constituent of natural gas. The relative abundance of methane on Earth makes it an economically attractive fuel, although capturing and storing it poses technical challenges due to its gaseous state under normal conditions for temperature and pressure. Naturally occurring methane is found both below ground and under the seafloor and is formed by both geological and biological processes. The largest reservoir of methane is under the seafloor in the form of methane clathrates. When methane reaches the surface and the atmosphere, it is known as atmospheric methane. The Earth's atmospheric methane concentration has increased by about 150% since 1750, and it accounts for 20% of the total radiative forcing from all of the long-lived and globally mixed greenhouse gases. It has also been detected on other pl ...
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List Of Prokaryotic Names With Standing In Nomenclature
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy Taxonomy is the practice and science of categorization or classification. A taxonomy (or taxonomical classification) is a scheme of classification, especially a hierarchical classification, in which things are organized into groups or types. ... of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in Nomenclature
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National Center For Biotechnology Information
The National Center for Biotechnology Information (NCBI) is part of the United States National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is located in Bethesda, Maryland, and was founded in 1988 through legislation sponsored by US Congressman Claude Pepper. The NCBI houses a series of databases relevant to biotechnology and biomedicine and is an important resource for bioinformatics tools and services. Major databases include GenBank for DNA sequences and PubMed, a bibliographic database for biomedical literature. Other databases include the NCBI Epigenomics database. All these databases are available online through the Entrez search engine. NCBI was directed by David Lipman, one of the original authors of the BLAST sequence alignment program and a widely respected figure in bioinformatics. GenBank NCBI had responsibility for making available the GenBan ...
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