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Koribacter Versatilis
''Koribacter versatilis'' is a member of the Acidobacteriota phylum which itself is a newly devised phylum of bacteria, and is only distantly related to other organisms in the domain bacteria. Its closest phylogenetic relative is "''Candidatus'' Solibacter usitatus", according to Michael Nerdahl. It contains 5,650,368 nucleotides, 4,777 proteins, and 55 RNA genes, and has a circular chromosome according to information found from GenBank. According to the Joint Genome Institute, “The bacterium is a gram-negative, highly capsulated, aerobic heterotroph that grows with a range of sugars, sugar polymers, and some organic acids.” It was first found in soil in a pasture from Australia in 2003, by a group of scientists led by S. J. Joseph. Although '' Koribacter'' has a very slow growth rate, sometimes taking up to a week to have a visible colony, it accounts for up to 14% of soil bacteria communities. The amount of ''Koribacter'' in soil is so abundant because iron is critical fo ...
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Naomi L
Naomi or Naomie may refer to: People and biblical figures * Naomi (given name), a female given name and a list of people with the name * Naomi (biblical figure), Ruth's mother-in-law in the Old Testament Book of Ruth * Naomi (Romanian singer) (born 1977), a.k.a. Naomy * Naomi (wrestler) (born 1987), professional wrestler * Terra Naomi, American indie folk singer-songwriter Arts and entertainment Fictional entities * Naomi, a character in the 2009 American fantasy comedy movie '' 17 Again'' * Naomi Bohannon, a character in the TV series '' Hell on Wheels'' * Naomi, Florida, a fictional town in the Kate DiCamillo novel ''Because of Winn-Dixie'' * Naomi Turner, a character in the American animated television series ''Elena of Avalor'' Music * Naomi Awards, a former British music award * ''Naomi'' (album), by American band The Cave Singers * "Naomi" (song), by Neutral Milk Hotel Other uses in arts and entertainment * ''Naomi'' (novel), a 1924 novel by Jun'ichirō Tanizaki * ''Na ...
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Acidobacteriota
Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture. Description Members of this phylum are physiologically diverse, and can be found in a variety of environments including soil, decomposing wood, hot springs, oceans, caves, and metal-contaminated soils. The members of this phylum are particularly abundant in soil habitats representing up to 52% of the total bacterial community. Environmental factors such as pH and nutrients have been seen to drive Acidobacteriota dynamics. Many Acidobacteriota are acidophilic, including the first described member of the phylum, '' Acidobacterium capsulatum''. Other notable species are ''Holophaga foetida'', ''Geothrix fermentans'', ''Acanthopleuribacter pedis'' and '' Bryobacter aggregatus''. Since they have only recently been discovered and the large majority have not been cultured, the ecology and metabolism of these bacter ...
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Phylum
In biology, a phylum (; plural: phyla) is a level of classification or taxonomic rank below kingdom and above class. Traditionally, in botany the term division has been used instead of phylum, although the International Code of Nomenclature for algae, fungi, and plants accepts the terms as equivalent. Depending on definitions, the animal kingdom Animalia contains about 31 phyla, the plant kingdom Plantae contains about 14 phyla, and the fungus kingdom Fungi contains about 8 phyla. Current research in phylogenetics is uncovering the relationships between phyla, which are contained in larger clades, like Ecdysozoa and Embryophyta. General description The term phylum was coined in 1866 by Ernst Haeckel from the Greek (, "race, stock"), related to (, "tribe, clan"). Haeckel noted that species constantly evolved into new species that seemed to retain few consistent features among themselves and therefore few features that distinguished them as a group ("a self-contain ...
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Candidatus
In prokaryote nomenclature, ''Candidatus'' (Latin for candidate of Roman office) is used to name prokaryotic phyla that are well characterized but yet-uncultured. Contemporary sequencing approaches, such as 16S sequencing or metagenomics, provide much information about the analyzed organisms and thus allow to identify and characterize individual species. However, the majority of prokaryotic species remain uncultivable and hence inaccessible for further characterization in ''in vitro'' study. The recent discoveries of a multitude of candidate taxa has led to candidate phyla radiation expanding the tree of life through the new insights in bacterial diversity. Nomenclature History The initial International Code of Nomenclature of Prokaryotes as well as early revisions did not account for the possibility of identifying prokaryotes which were not yet cultivable. Therefore, the term ''Candidatus'' was proposed in the context of a conference of the International Committee on Sys ...
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Michael Nerdahl
Michael may refer to: People * Michael (given name), a given name * Michael (surname), including a list of people with the surname Michael Given name "Michael" * Michael (archangel), ''first'' of God's archangels in the Jewish, Christian and Islamic religions * Michael (bishop elect), English 13th-century Bishop of Hereford elect * Michael (Khoroshy) (1885–1977), cleric of the Ukrainian Orthodox Church of Canada * Michael Donnellan (1915–1985), Irish-born London fashion designer, often referred to simply as "Michael" * Michael (footballer, born 1982), Brazilian footballer * Michael (footballer, born 1983), Brazilian footballer * Michael (footballer, born 1993), Brazilian footballer * Michael (footballer, born February 1996), Brazilian footballer * Michael (footballer, born March 1996), Brazilian footballer * Michael (footballer, born 1999), Brazilian footballer Rulers =Byzantine emperors= *Michael I Rangabe (d. 844), married the daughter of Emperor Nikephoros I *Mich ...
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GenBank
The GenBank sequence database is an open access, annotated collection of all publicly available nucleotide sequences and their protein translations. It is produced and maintained by the National Center for Biotechnology Information (NCBI; a part of the National Institutes of Health in the United States) as part of the International Nucleotide Sequence Database Collaboration (INSDC). GenBank and its collaborators receive sequences produced in laboratories throughout the world from more than 500,000 formally described species. The database started in 1982 by Walter Goad and Los Alamos National Laboratory. GenBank has become an important database for research in biological fields and has grown in recent years at an exponential rate by doubling roughly every 18 months. Release 250.0, published in June 2022, contained over 17 trillion nucleotide bases in more than 2,45 billion sequences. GenBank is built by direct submissions from individual laboratories, as well as from bulk submiss ...
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Joint Genome Institute
The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), first located in Walnut Creek then Berkeley, California, was created in 1997 to unite the expertise and resources in genome mapping, DNA sequencing, technology development, and information sciences pioneered at the DOE genome centers at Lawrence Berkeley National Laboratory (Berkeley Lab), Lawrence Livermore National Laboratory (LLNL) and Los Alamos National Laboratory (LANL). As a DOE Office of Science User Facility of Berkeley Lab, the JGI staff is composed of employees from Berkeley Lab, LLNL and the HudsonAlpha Institute for Biotechnology. The JGI also collaborates with other DOE-supported programs and facilities, such as the Environmental Molecular Sciences Laboratory at Pacific Northwest National Laboratory (PNNL), the National Energy Research Scientific Computing Center, or NERSC, and the DOE Bioenergy Research Centers. History In 1999, the University of California, which manages the three national labs ...
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Organic Acid
An organic acid is an organic compound with acidic properties. The most common organic acids are the carboxylic acids, whose acidity is associated with their carboxyl group –COOH. Sulfonic acids, containing the group –SO2OH, are relatively stronger acids. Alcohols, with –OH, can act as acids but they are usually very weak. The relative stability of the conjugate base of the acid determines its acidity. Other groups can lsoconfer acidity, usually weakly: the thiol group –SH, the enol group, and the phenol group. In biological systems, organic compounds containing these groups are generally referred to as organic acids. A few common examples include: * lactic acid * acetic acid * formic acid * citric acid * oxalic acid * uric acid * malic acid * tartaric acid Characteristics In general, organic acids are weak acids and do not dissociate completely in water, whereas the strong mineral acids do. Lower molecular mass organic acids such as formic and lac ...
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Carbon Monoxide
Carbon monoxide ( chemical formula CO) is a colorless, poisonous, odorless, tasteless, flammable gas that is slightly less dense than air. Carbon monoxide consists of one carbon atom and one oxygen atom connected by a triple bond. It is the simplest molecule of the oxocarbon family. In coordination complexes the carbon monoxide ligand is called carbonyl. It is a key ingredient in many processes in industrial chemistry. The most common source of carbon monoxide is the partial combustion of carbon-containing compounds, when insufficient oxygen or heat is present to produce carbon dioxide. There are also numerous environmental and biological sources that generate and emit a significant amount of carbon monoxide. It is important in the production of many compounds, including drugs, fragrances, and fuels. Upon emission into the atmosphere, carbon monoxide affects several processes that contribute to climate change. Carbon monoxide has important biological roles across phylog ...
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Acidobacteriota
Acidobacteriota is a phylum of Gram-negative bacteria. Its members are physiologically diverse and ubiquitous, especially in soils, but are under-represented in culture. Description Members of this phylum are physiologically diverse, and can be found in a variety of environments including soil, decomposing wood, hot springs, oceans, caves, and metal-contaminated soils. The members of this phylum are particularly abundant in soil habitats representing up to 52% of the total bacterial community. Environmental factors such as pH and nutrients have been seen to drive Acidobacteriota dynamics. Many Acidobacteriota are acidophilic, including the first described member of the phylum, '' Acidobacterium capsulatum''. Other notable species are ''Holophaga foetida'', ''Geothrix fermentans'', ''Acanthopleuribacter pedis'' and '' Bryobacter aggregatus''. Since they have only recently been discovered and the large majority have not been cultured, the ecology and metabolism of these bacter ...
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