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Graph Modelling Language
Graph Modeling Language (GML) is a hierarchical ASCII-based file format for describing graphs. It has been also named ''Graph Meta Language''. Example A simple graph in GML format: graph comment "This is a sample graph" directed 1 id 42 label "Hello, I am a graph" node [ id 1 label "node 1" thisIsASampleAttribute 42 node [ id 2 label "node 2" thisIsASampleAttribute 43 ] node [ id 3 label "node 3" thisIsASampleAttribute 44 ] edge [ source 1 target 2 label "Edge from node 1 to node 2" ] edge [ source 2 target 3 label "Edge from node 2 to node 3" ] edge source 3 target 1 label "Edge from node 3 to node 1" ] Applications supporting GML * Cytoscape, an open source bioinformatics software platform for visualizing molecular interaction networks, loads and save previously-constructed interaction networks in GML. * igraph, an open source network analysis library with interfaces to multiple programming languages. * Gephi, an open sourc ...
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Graphviz
Graphviz (short for ''Graph Visualization Software'') is a package of open-source tools initiated by AT&T Labs Research for drawing graphs specified in DOT language scripts having the file name extension "gv". It also provides libraries for software applications to use the tools. Graphviz is free software licensed under the Eclipse Public License. Tools ; dot : a command-line tool to produce layered graph drawings in a variety of output formats, such as (PostScript, PDF, SVG, annotated text and so on). ; neato : useful for undirected graphs. "spring model" layout, minimizes global energy. Useful for graphs up to about 1000 nodes ; fdp : force-directed graph drawing similar to "spring model", but minimizes forces instead of energy. Useful for undirected graphs. ; sfdp : multiscale version of fdp for the layout of large undirected graphs ; twopi : for radial graph layouts. Nodes are placed on concentric circles depending their distance from a given root node ; circo : cir ...
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ASCII
ASCII ( ), abbreviated from American Standard Code for Information Interchange, is a character encoding standard for electronic communication. ASCII codes represent text in computers, telecommunications equipment, and other devices. Because of technical limitations of computer systems at the time it was invented, ASCII has just 128 code points, of which only 95 are , which severely limited its scope. All modern computer systems instead use Unicode, which has millions of code points, but the first 128 of these are the same as the ASCII set. The Internet Assigned Numbers Authority (IANA) prefers the name US-ASCII for this character encoding. ASCII is one of the IEEE milestones. Overview ASCII was developed from telegraph code. Its first commercial use was as a seven-bit teleprinter code promoted by Bell data services. Work on the ASCII standard began in May 1961, with the first meeting of the American Standards Association's (ASA) (now the American National Standards I ...
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Python (programming Language)
Python is a high-level, general-purpose programming language. Its design philosophy emphasizes code readability with the use of significant indentation. Python is dynamically-typed and garbage-collected. It supports multiple programming paradigms, including structured (particularly procedural), object-oriented and functional programming. It is often described as a "batteries included" language due to its comprehensive standard library. Guido van Rossum began working on Python in the late 1980s as a successor to the ABC programming language and first released it in 1991 as Python 0.9.0. Python 2.0 was released in 2000 and introduced new features such as list comprehensions, cycle-detecting garbage collection, reference counting, and Unicode support. Python 3.0, released in 2008, was a major revision that is not completely backward-compatible with earlier versions. Python 2 was discontinued with version 2.7.18 in 2020. Python consistently ran ...
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Json Graph
JSON (JavaScript Object Notation, pronounced ; also ) is an open standard file format and data interchange format that uses human-readable text to store and transmit data objects consisting of attribute–value pairs and arrays (or other serializable values). It is a common data format with diverse uses in electronic data interchange, including that of web applications with servers. JSON is a language-independent data format. It was derived from JavaScript, but many modern programming languages include code to generate and parse JSON-format data. JSON filenames use the extension .json. Any valid JSON file is a valid JavaScript (.js) file, even though it makes no changes to a web page on its own. Douglas Crockford originally specified the JSON format in the early 2000s. He and Chip Morningstar sent the first JSON message in April 2001. Naming and pronunciation The 2017 international standard (ECMA-404 and ISO/IEC 21778:2017) specifies "Pronounced , as in 'Jason and The ...
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Graph Query Language
GQL (Graph Query Language) is a proposed standard graph query language. In September 2019 a proposal for a project to create a new standard graph query language (ISO/IEC 39075 Information Technology — Database Languages — GQL) was approved by a vote of national standards bodies which are members of ISO/IEC Joint Technical Committee ISO/IEC JTC 1. JTC 1 is responsible for international Information Technology standards. GQL is intended to be a declarative database query language, like SQL. Project for a new International Standard Graph Query Language The GQL project proposal states: The GQL project is the culmination of converging initiatives dating back to 2016, particularly a private proposal from Neo4j to other database vendors in July 2016, and a proposal from Oracle technical staff within the ISO/IEC JTC 1 standards process later that year. The GQL project is led by Stefan Plantikow (who was the first lead engineer of Neo4j's Cypher for Apache Spark project) and Ste ...
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DOT (graph Description Language)
DOT is a graph description language. DOT graphs are typically files with the filename extension ''gv'' or ''dot''. The extension ''gv'' is preferred, to avoid confusion with the extension ''dot'' used by versions of Microsoft Word before 2007. Various programs can process DOT files. Some, such as ''dot'', ''neato'', ''twopi'', ''circo'', ''fdp'', and ''sfdp'', can read a DOT file and render it in graphical form. Others, such as ''gvpr'', ''gc'', ''acyclic'', ''ccomps'', ''sccmap'', and ''tred'', read DOT files and perform calculations on the represented graph. Finally, others, such as ''lefty'', ''dotty'', and ''grappa'', provide an interactive interface. The ''GVedit'' tool combines a text editor with noninteractive image viewer. Most programs are part of the Graphviz package or use it internally. Syntax Graph types Undirected graphs At its simplest, DOT can be used to describe an undirected graph. An undirected graph shows simple relations between objects, such as f ...
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Information Visualisation
Data and information visualization (data viz or info viz) is an interdisciplinary field that deals with the graphic representation of data and information. It is a particularly efficient way of communicating when the data or information is numerous as for example a time series. It is also the study of visual representations of abstract data to reinforce human cognition. The abstract data include both numerical and non-numerical data, such as text and geographic information. It is related to infographics and scientific visualization. One distinction is that it's information visualization when the spatial representation (e.g., the page layout of a graphic design) is chosen, whereas it's scientific visualization when the spatial representation is given. From an academic point of view, this representation can be considered as a mapping between the original data (usually numerical) and graphic elements (for example, lines or points in a chart). The mapping determines how the att ...
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Tulip (software)
Tulip is an information visualization framework dedicated to the analysis and visualization of relational data. Tulip aims to provide the developer with a complete library, supporting the design of interactive information visualization applications for relational data that can be tailored to the problems being addressed. Written in C++ the framework enables the development of algorithms, visual encodings, interaction techniques, data models, and domain-specific visualizations. Tulip allows the reuse of components; this makes the framework efficient for research prototyping as well as the development of end-user applications. See also * * Graphviz * Cytoscape * Gephi Gephi ( ) is an open-source network analysis and visualization software package written in Java on the NetBeans platform. History Initially developed by students of the University of Technology of Compiègne (UTC) in France, Gephi has been se ... External links * Free application software Graph drawing ...
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Social Network Analysis
Social network analysis (SNA) is the process of investigating social structures through the use of networks and graph theory. It characterizes networked structures in terms of ''nodes'' (individual actors, people, or things within the network) and the ''ties'', ''edges'', or ''links'' (relationships or interactions) that connect them. Examples of social structures commonly visualized through social network analysis include social media networks, memes spread, information circulation, friendship and acquaintance networks, business networks, knowledge networks, difficult working relationships, social networks, collaboration graphs, kinship, disease transmission, and sexual relationships. These networks are often visualized through '' sociograms'' in which nodes are represented as points and ties are represented as lines. These visualizations provide a means of qualitatively assessing networks by varying the visual representation of their nodes and edges to reflect attribute ...
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NetworkX
NetworkX is a Python library for studying graphs and networks. NetworkX is free software released under the BSD-new license. Features * Classes for graphs and digraphs. * Conversion of graphs to and from several formats. * Ability to construct random graphs or construct them incrementally. * Ability to find subgraphs, cliques, k-cores. * Explore adjacency, degree, diameter, radius, center, betweenness, etc. * Draw networks in 2D and 3D. Suitability NetworkX is suitable for operation on large real-world graphs: e.g., graphs in excess of 10 million nodes and 100 million edges. Due to its dependence on a pure-Python "dictionary of dictionary" data structure, NetworkX is a reasonably efficient, very scalable, highly portable framework for network and social network analysis. Integration NetworkX is integrated into SageMath. See also * Social network analysis software Social network analysis software (SNA software) is software which facilitates quantitative or qu ...
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Graph (discrete Mathematics)
In discrete mathematics, and more specifically in graph theory, a graph is a structure amounting to a set of objects in which some pairs of the objects are in some sense "related". The objects correspond to mathematical abstractions called '' vertices'' (also called ''nodes'' or ''points'') and each of the related pairs of vertices is called an ''edge'' (also called ''link'' or ''line''). Typically, a graph is depicted in diagrammatic form as a set of dots or circles for the vertices, joined by lines or curves for the edges. Graphs are one of the objects of study in discrete mathematics. The edges may be directed or undirected. For example, if the vertices represent people at a party, and there is an edge between two people if they shake hands, then this graph is undirected because any person ''A'' can shake hands with a person ''B'' only if ''B'' also shakes hands with ''A''. In contrast, if an edge from a person ''A'' to a person ''B'' means that ''A'' owes money to ''B'', th ...
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Free Software
Free software or libre software is computer software distributed under terms that allow users to run the software for any purpose as well as to study, change, and distribute it and any adapted versions. Free software is a matter of liberty, not price; all users are legally free to do what they want with their copies of a free software (including profiting from them) regardless of how much is paid to obtain the program.Selling Free Software
(gnu.org)
Computer programs are deemed "free" if they give end-users (not just the developer) ultimate control over the software and, subsequently, over their devices. The right to study and modify a computer program entails that source code< ...
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