Geofilum Rubicundum
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Geofilum Rubicundum
''Geofilum rubicundum'' is a facultatively anaerobic bacterium from the genus of ''Geofilum'' which has been isolated from deep subseafloor sediments from the Shimokita Peninsula from Japan Japan is an island country in East Asia. Located in the Pacific Ocean off the northeast coast of the Asia, Asian mainland, it is bordered on the west by the Sea of Japan and extends from the Sea of Okhotsk in the north to the East China Sea .... References External linksType strain of ''Geofilum rubicundum'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Bacteria described in 2012 Bacteroidia {{Bacteroidetes-stub ...
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Bacteria
Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit the air, soil, water, Hot spring, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the nitrogen fixation, fixation of nitrogen from the Earth's atmosphere, atmosphere. The nutrient cycle includes the decomposition of cadaver, dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, suc ...
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Bacteroidota
The phylum (biology), phylum Bacteroidota (synonym Bacteroidetes) is composed of three large classes of Gram-negative bacteria, Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals. Although some ''Bacteroides'' spp. can be Opportunistic Pathogens, opportunistic pathogens, many ''Bacteroidota'' are Symbiotic bacteria, symbiotic species highly adjusted to the gastrointestinal tract. ''Bacteroides'' are highly abundant in intestines, reaching up to 1011 cells g−1 of intestinal material. They perform metabolic conversions that are essential for the host, such as degradation of proteins or complex sugar polymers. ''Bacteroidota'' colonize the gastrointestinal tract already in infants, as non-digestible Human milk oligosaccharide, oligosaccharides in mother milk support the growth of both ''Bacteroides'' and ''Bifidoba ...
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Bacteroidia
Bacteroidales is an order (biology), order of bacteria. Notably it includes the genera ''Prevotella'' and ''Bacteroides'' , which are commonly found in the Human gastrointestinal microbiota, human gut microbiota. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature and National Center for Biotechnology Information (NCBI). Notes References

Bacteroidia Bacteria orders {{bacteroidetes-stub ...
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Bacteroidales
Bacteroidales is an order of bacteria. Notably it includes the genera '' Prevotella'' and ''Bacteroides'' , which are commonly found in the human gut microbiota. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature and National Center for Biotechnology Information The National Center for Biotechnology Information (NCBI) is part of the National Library of Medicine (NLM), a branch of the National Institutes of Health (NIH). It is approved and funded by the government of the United States. The NCBI is lo ... (NCBI). Notes References Bacteroidia Bacteria orders {{bacteroidetes-stub ...
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Marinilabiliaceae
The ''Marinilabiliaceae'' are a family of bacteria.Garrity, George M.; Brenner, Don J.; Krieg, Noel R.; Staley, James T. (eds.) (2005). Bergey's Manual of Systematic Bacteriology, Volume Two: The Proteobacteria, Part C: The Alpha-, Beta-, Delta-, and Epsilonproteobacteria. New York, New York: Springer. . Characteristics Bacterial cells that belong to the ''Marinilabiliaceae'' family are typically thin, flexible rods. Mostly species are motile by gliding motily. They are saccharolytic and need NaCl for growing. Metabolism All species of ''Marinilabiliaceae'' are heterotrophic, they do not perform photosynthesis. The genera '' Alkaliflexus'' and '' Anaerophaga'' as well as some other genera have a strictly fermentative metabolism. ''Marinilabilia'' is facultatively anaerobic. It has respiratory The respiratory system (also respiratory apparatus, ventilatory system) is a biological system consisting of specific organs and structures used for gas exchange in animals and ...
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Geofilum
''Geofilum'' is a genus of bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ... from the family of Marinilabiliaceae. References {{Taxonbar, from=Q27438475 Bacteria genera Bacteroidia ...
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LPSN
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy image:Hierarchical clustering diagram.png, 280px, Generalized scheme of taxonomy Taxonomy is a practice and science concerned with classification or categorization. Typically, there are two parts to it: the development of an underlying scheme o ... of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service and since 2022 LPSN is interconnected with the Type (Strain) Genome Server (TYGS), DSMZ's high-throughput platform for accurate genome-based taxonomy. See also * Code o ...
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Facultative Anaerobic Organism
A facultative anaerobic organism is an organism that makes ATP by aerobic respiration if oxygen is present, but is capable of switching to fermentation if oxygen is absent. Some examples of facultatively anaerobic bacteria are '' Staphylococcus'' spp., ''Escherichia coli'', ''Salmonella'', '' Listeria'' spp., '' Shewanella oneidensis'' and '' Yersinia pestis''. Certain eukaryotes are also facultative anaerobes, including pupfish, fungi such as ''Saccharomyces cerevisiae'' and many aquatic invertebrates such as nereid polychaetes. It has been observed that in mutants of '' Salmonella typhimurium'' that underwent mutations to be either obligate aerobes or anaerobes, there were varying levels of chromatin-remodeling proteins. The obligate aerobes were later found to have a defective DNA gyrase subunit A gene ('' gyrA''), while obligate anaerobes were defective in topoisomerase I (''topI''). This indicates that topoisomerase I and its associated relaxation of chromosomal DNA is r ...
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Shimokita Peninsula
The is the remote northeastern cape of the Japanese island of Honshū, stretching out towards Hokkaido. Overview It is bordered by the Pacific Ocean to the east, Tsugaru Strait to the north and Mutsu Bay to the west and south. Shaped like an axe pointing west, the peninsula has a thin "axe handle" connecting the mountainous "axe blade" to the mainland of Honshū to the south. The peninsula contains the northernmost point on Honshū, Cape Ōma, and the largest sand dunes in Japan (the Sarugamori Sand Dunes). The peninsula owes its name to its being the lower (''shimo'') portion of the former Kita District (North District) of Mutsu Province before the premodern province was divided in 1868. Administratively the area is a part of Aomori Prefecture, and the bulk of the area falls within the jurisdiction of the city of Mutsu, with a number of small towns and villages along the periphery. Most of the inhabitants live in coastal areas rather than the mountainous interior. Por ...
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Japan
Japan is an island country in East Asia. Located in the Pacific Ocean off the northeast coast of the Asia, Asian mainland, it is bordered on the west by the Sea of Japan and extends from the Sea of Okhotsk in the north to the East China Sea in the south. The Japanese archipelago consists of four major islands—Hokkaido, Honshu, Shikoku, and Kyushu—and List of islands of Japan, thousands of smaller islands, covering . Japan has a population of over 123 million as of 2025, making it the List of countries and dependencies by population, eleventh-most populous country. The capital of Japan and List of cities in Japan, its largest city is Tokyo; the Greater Tokyo Area is the List of largest cities, largest metropolitan area in the world, with more than 37 million inhabitants as of 2024. Japan is divided into 47 Prefectures of Japan, administrative prefectures and List of regions of Japan, eight traditional regions. About three-quarters of Geography of Japan, the countr ...
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Bacteria Described In 2012
Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit the air, soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria play a vital role in many stages of the nutrient cycle by recycling nutrients and the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in mutualistic, commensal and parasi ...
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