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Fungal Genome
Fungal genomes are among the smallest genomes of eukaryotes. The sizes of fungal genomes range from less than 10 Mbp to hundreds of Mbp. The average genome size is approximately 37 Mbp in Ascomycota, 47 Mbp in Basidiomycota and 75 Mbp in Oomycota. The sizes and gene numbers of the smallest genomes of free-living fungi such as those of ''Wallemia ichthyophaga'', ''Wallemia mellicola'' or ''Malassezia restricta'' are comparable to bacterial genomes. The genome of the extensively researched yeast '' Saccharomyces cerevisiae'' contains approximately 12 Mbp and was the first completely sequenced eukaryotic genome. Due to their compact size fungal genomes can be sequenced with less resources than most other eukaryotic genomes and are thus important models for research. Some fungi exist as stable haploid, diploid, or polyploid cells, others change ploidy in response to environmental conditions and aneuploidy is also observed in novel environments or during periods of stress. __TOC__ Genom ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Eukaryote
Eukaryotes () are organisms whose cells have a nucleus. All animals, plants, fungi, and many unicellular organisms, are Eukaryotes. They belong to the group of organisms Eukaryota or Eukarya, which is one of the three domains of life. Bacteria and Archaea (both prokaryotes) make up the other two domains. The eukaryotes are usually now regarded as having emerged in the Archaea or as a sister of the Asgard archaea. This implies that there are only two domains of life, Bacteria and Archaea, with eukaryotes incorporated among archaea. Eukaryotes represent a small minority of the number of organisms, but, due to their generally much larger size, their collective global biomass is estimated to be about equal to that of prokaryotes. Eukaryotes emerged approximately 2.3–1.8 billion years ago, during the Proterozoic eon, likely as flagellated phagotrophs. Their name comes from the Greek εὖ (''eu'', "well" or "good") and κάρυον (''karyon'', "nut" or "kernel"). E ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
MinHash
In computer science and data mining, MinHash (or the min-wise independent permutations locality sensitive hashing scheme) is a technique for quickly estimating how similar two sets are. The scheme was invented by , and initially used in the AltaVista search engine to detect duplicate web pages and eliminate them from search results.. It has also been applied in large-scale clustering problems, such as clustering documents by the similarity of their sets of words.. Jaccard similarity and minimum hash values The Jaccard similarity coefficient is a commonly used indicator of the similarity between two sets. Let be a set and and be subsets of , then the Jaccard index is defined to be the ratio of the number of elements of their intersection and the number of elements of their union: : J(A,B) = . This value is 0 when the two sets are disjoint, 1 when they are equal, and strictly between 0 and 1 otherwise. Two sets are more similar (i.e. have relatively more members in common) w ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Tilletia
''Tilletia'' is a genus of smut fungi in the Tilletiaceae family. Species in this genus are plant pathogens that affect various grasses. '' Tilletia indica'', which causes Karnal bunt of wheat, and ''Tilletia horrida'', responsible for rice kernel smut, are examples of species that affect economically important crops. The widespread genus contains about 175 species. The genus was circumscribed by Edmond Tulasne and Charles Tulasne in Ann. Sci. Nat. Bot. ser.3, vol.7 on page 112 in 1847. The genus was named after a agronomist from France, Mathieu Tillet (1714–1791). Species As accepted by Species Fungorum; * ''Tilletia abscondita'' * '' Tilletia acroceratis'' * '' Tilletia aegopogonis'' * ''Tilletia ahmadiana'' * '' Tilletia airae-caespitosae'' * '' Tilletia airina'' * '' Tilletia alopecuri'' * '' Tilletia anthoxanthi'' * '' Tilletia apludae'' * '' Tilletia aristidae'' * '' Tilletia arthraxonis'' * '' Tilletia arundinellae'' * '' Tilletia asperifolia'' * '' Till ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Aureobasidium Pullulans
''Aureobasidium pullulans'' is a ubiquitous and generalistic black, yeast-like fungus that can be found in different environments (e.g. soil, water, air and limestone). It is well known as a naturally occurring epiphyte or endophyte of a wide range of plant species (e.g. apple, grape, cucumber, green beans, cabbage) without causing any symptoms of disease. ''A. pullulans'' has a high importance in biotechnology for the production of different enzymes, siderophores and pullulan. Furthermore, ''A. pullulans'' is used in biological control of plant diseases, especially storage diseases. Chronic human exposure to ''A. pullulans'' via humidifiers or air conditioners can lead to hypersensitivity pneumonitis (extrinsic allergic alveolitis) or " humidifier lung". This condition is characterized acutely by dyspnea, cough, fever, chest infiltrates, and acute inflammatory reaction. The condition can also be chronic, and lymphocyte-mediated. The chronic condition is characterized radiog ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Average Nucleotide Identitiy
In ordinary language, an average is a single number taken as representative of a list of numbers, usually the sum of the numbers divided by how many numbers are in the list (the arithmetic mean). For example, the average of the numbers 2, 3, 4, 7, and 9 (summing to 25) is 5. Depending on the context, an average might be another statistic such as the median, or mode. For example, the average personal income is often given as the median—the number below which are 50% of personal incomes and above which are 50% of personal incomes—because the mean would be higher by including personal incomes from a few billionaires. For this reason, it is recommended to avoid using the word "average" when discussing measures of central tendency. General properties If all numbers in a list are the same number, then their average is also equal to this number. This property is shared by each of the many types of average. Another universal property is monotonicity: if two lists of numbers ''A'' ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Ploidy
Ploidy () is the number of complete sets of chromosomes in a cell, and hence the number of possible alleles for autosomal and pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively, in each homologous chromosome pair, which chromosomes naturally exist as. Somatic cells, tissues, and individual organisms can be described according to the number of sets of chromosomes present (the "ploidy level"): monoploid (1 set), diploid (2 sets), triploid (3 sets), tetraploid (4 sets), pentaploid (5 sets), hexaploid (6 sets), heptaploid or septaploid (7 sets), etc. The generic term polyploid is often used to describe cells with three or more chromosome sets. Virtually all sexually reproducing organisms are made up of somatic cells that are diploid or greater, but ploidy level may vary widely between different organisms, between different tissues within the same organism, and at different stages in an organism's life cycle. Ha ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Haploid
Ploidy () is the number of complete sets of chromosomes in a cell (biology), cell, and hence the number of possible alleles for Autosome, autosomal and Pseudoautosomal region, pseudoautosomal genes. Sets of chromosomes refer to the number of maternal and paternal chromosome copies, respectively, in each homologous chromosome pair, which chromosomes naturally exist as. Somatic cells, Tissue (biology), tissues, and Individual#Biology, individual organisms can be described according to the number of sets of chromosomes present (the "ploidy level"): monoploid (1 set), diploid (2 sets), triploid (3 sets), tetraploid (4 sets), pentaploid (5 sets), hexaploid (6 sets), heptaploid or septaploid (7 sets), etc. The generic term polyploidy, polyploid is often used to describe cells with three or more chromosome sets. Virtually all sexual reproduction, sexually reproducing organisms are made up of somatic cells that are diploid or greater, but ploidy level may vary widely between different or ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Hortaea Werneckii
''Hortaea werneckii'' is a species of yeast in the family Teratosphaeriaceae. It is a black yeast that is investigated for its remarkable halotolerance. While the addition of salt to the medium is not required for its cultivation, ''H. werneckii'' can grow in close to saturated NaCl solutions. To emphasize this unusually wide adaptability, and to distinguish'' H. werneckii'' from other halotolerant fungi, which have lower maximum salinity limits, some authors describe ''H. werneckii'' as "extremely halotolerant". Several salt-tolerance mechanisms of ''H. werneckii ''have been studied on molecular level. For example, it is known that its major compatible solutes are glycerol, erythritol, arabitol, and mannitol; melanin accumulation of the cell wall aids in retention of at least glycerol inside of the cell. Several components of the high osmolarity glycerol (HOG) signalling pathway (which controls responses to osmotic shock) have been studied in detail and some s ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Halotolerance
Halotolerance is the adaptation of living organisms to conditions of high salinity. Halotolerant species tend to live in areas such as hypersaline lakes, coastal dunes, saline deserts, salt marshes, and inland salt seas and springs. Halophiles are organisms that live in highly saline environments, and require the salinity to survive, while halotolerant organisms (belonging to different domains of life) can grow under saline conditions, but do not require elevated concentrations of salt for growth. Halophytes are salt-tolerant higher plants. Halotolerant microorganisms are of considerable biotechnological interest. Applications Fields of scientific research relevant to halotolerance include biochemistry, molecular biology, cell biology, physiology, ecology, and genetics. An understanding of halotolerance can be applicable to areas such as arid-zone agriculture, xeriscaping, aquaculture (of fish or algae), bioproduction of desirable compounds (such as phycobiliproteins or ca ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Asexual Reproduction
Asexual reproduction is a type of reproduction that does not involve the fusion of gametes or change in the number of chromosomes. The offspring that arise by asexual reproduction from either unicellular or multicellular organisms inherit the full set of genes of their single parent and thus the newly created individual is genetically and physically similar to the parent or an exact clone of the parent. Asexual reproduction is the primary form of reproduction for single-celled organisms such as archaea and bacteria. Many eukaryotic organisms including plants, animals, and fungi can also reproduce asexually. In vertebrates, the most common form of asexual reproduction is parthenogenesis, which is typically used as an alternative to sexual reproduction in times when reproductive opportunities are limited. Komodo dragons and some monitor lizards can also reproduce asexually. While all prokaryotes reproduce without the formation and fusion of gametes, mechanisms for lateral g ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Phenotype
In genetics, the phenotype () is the set of observable characteristics or traits of an organism. The term covers the organism's morphology or physical form and structure, its developmental processes, its biochemical and physiological properties, its behavior, and the products of behavior. An organism's phenotype results from two basic factors: the expression of an organism's genetic code, or its genotype, and the influence of environmental factors. Both factors may interact, further affecting phenotype. When two or more clearly different phenotypes exist in the same population of a species, the species is called polymorphic. A well-documented example of polymorphism is Labrador Retriever coloring; while the coat color depends on many genes, it is clearly seen in the environment as yellow, black, and brown. Richard Dawkins in 1978 and then again in his 1982 book '' The Extended Phenotype'' suggested that one can regard bird nests and other built structures such as ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
