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Erythrobacter Dokdonensis
''Erythrobacter dokdonensis'' is a Gram-negative, non-spore-forming, slightly halophilic and non-motile bacteria from the genus ''Erythrobacter'' which has been isolated from sea water in Dokdo in Korea Korea ( ko, 한국, or , ) is a peninsular region in East Asia. Since 1945, it has been divided at or near the 38th parallel, with North Korea (Democratic People's Republic of Korea) comprising its northern half and South Korea (Republic o .... References External linksType strain of ''Porphyrobacter dokdonensis'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Sphingomonadales Bacteria described in 2006 {{Sphingomonadales-stub ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic re ...
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Pseudomonadota
Pseudomonadota (synonym Proteobacteria) is a major phylum of Gram-negative bacteria. The renaming of phyla in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature. The phylum Proteobacteria includes a wide variety of pathogenic genera, such as '' Escherichia'', '' Salmonella'', '' Vibrio'', '' Yersinia'', '' Legionella'', and many others.Slonczewski JL, Foster JW, Foster E. Microbiology: An Evolving Science 5th Ed. WW Norton & Company; 2020. Others are free-living (non parasitic) and include many of the bacteria responsible for nitrogen fixation. Carl Woese established this grouping in 1987, calling it informally the "purple bacteria and their relatives". Because of the great diversity of forms found in this group, it was later informally named Proteobacteria, after Proteus, a Greek god of the sea capable of assuming many different shapes (not after the Proteobacteria genus ''Proteus''). In 2021 the In ...
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Alphaproteobacteria
Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alphaproteobacteria. The Alphaproteobacteria are highly diverse and possess few commonalities, but nevertheless share a common ancestor. Like all ''Proteobacteria'', its members are gram-negative and some of its intracellular parasitic members lack peptidoglycan and are consequently gram variable. Characteristics The Alphaproteobacteria are a diverse taxon and comprises several phototrophic genera, several genera metabolising C1-compounds (''e.g.'', ''Methylobacterium'' spp.), symbionts of plants (''e.g.'', '' Rhizobium'' spp.), endosymbionts of arthropods (''Wolbachia'') and intracellular pathogens (''e.g. Rickettsia''). Moreover, the class is sister to the protomitochondrion, the bacterium that was engulfed by the eukaryotic ancestor and gave rise to the mitochondria, which are organelles in eukaryoti ...
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Sphingomonadales
The ''Sphingomonadales'' are an order of the Alphaproteobacteria. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy Taxonomy is the practice and science of categorization or classification. A taxonomy (or taxonomical ... and the phylogeny is based on whole-genome sequences. References Sphingomonadales Bacteria orders Alphaproteobacteria {{Alphaproteobacteria-stub ...
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Erythrobacteraceae
''Erythrobacteraceae'' is a bacterium family in the order of Sphingomonadales. Phylogeny The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature and the phylogeny is based on whole-genome sequences. References Further reading * * Sphingomonadales {{Sphingomonadales-stub ...
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Erythrobacter
''Erythrobacter'' is a Gram-negative and rod-shaped bacteria genus from the family Erythrobacteraceae. Species ''Erythrobacter'' comprises the followings species: * ''Erythrobacter alti'' Yoon 2020 * "''Erythrobacter aureus''" Tang et al. 2019 * ''Erythrobacter colymbi'' (Furuhata ''et al.'' 2013) Xu ''et al.'' 2020 * ''Erythrobacter cryptus'' (da Costa ''et al.'' 2003) Xu ''et al.'' 2020 * ''Erythrobacter dokdonensis'' (Yoon ''et al.'' 2006) Xu ''et al.'' 2020 * ''Erythrobacter donghaensis'' (Yoon ''et al.'' 2004) Xu ''et al.'' 2020 * ''Erythrobacter insulae'' Park ''et al.'' 2020 * '' Erythrobacter litoralis'' Yurkov ''et al.'' 1994 * ''Erythrobacter longus'' Shiba and Simidu 1982 * "''Erythrobacter mangrovi''" Ye et al. 2020 * "''Erythrobacter nanhaiensis''" Chen et al. 2019 * ''Erythrobacter neustonensis'' (Fuerst ''et al.'' 1993) Xu ''et al.'' 2020 * ''Erythrobacter ramosus'' (Yurkov ''et al.'' 1994) Xu ''et al.'' 2020 * ''Erythrobacter sanguineus'' (Hiraishi ...
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LPSN
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in NomenclatureInternational Journal of Systematic and Evolutionary Microbiology (IJSEM)
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Gram-negative
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall sandwiched between an inner cytoplasmic cell membrane and a bacterial outer membrane. Gram-negative bacteria are found in virtually all environments on Earth that support life. The gram-negative bacteria include the model organism ''Escherichia coli'', as well as many pathogenic bacteria, such as '' Pseudomonas aeruginosa'', '' Chlamydia trachomatis'', and '' Yersinia pestis''. They are a significant medical challenge as their outer membrane protects them from many antibiotics (including penicillin), detergents that would normally damage the inner cell membrane, and lysozyme, an antimicrobial enzyme produced by animals that forms part of the innate immune system. Additionally, the outer leaflet of this membrane comprises a complex ...
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Spore
In biology, a spore is a unit of sexual or asexual reproduction that may be adapted for dispersal and for survival, often for extended periods of time, in unfavourable conditions. Spores form part of the life cycles of many plants, algae, fungi and protozoa. Bacterial spores are not part of a sexual cycle, but are resistant structures used for survival under unfavourable conditions. Myxozoan spores release amoeboid infectious germs ("amoebulae") into their hosts for parasitic infection, but also reproduce within the hosts through the pairing of two nuclei within the plasmodium, which develops from the amoebula. In plants, spores are usually haploid and unicellular and are produced by meiosis in the sporangium of a diploid sporophyte. Under favourable conditions the spore can develop into a new organism using mitotic division, producing a multicellular gametophyte, which eventually goes on to produce gametes. Two gametes fuse to form a zygote which develops into ...
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Halophilic
The halophiles, named after the Greek word for "salt-loving", are extremophiles that thrive in high salt concentrations. While most halophiles are classified into the domain Archaea, there are also bacterial halophiles and some eukaryotic species, such as the alga '' Dunaliella salina'' and fungus '' Wallemia ichthyophaga''. Some well-known species give off a red color from carotenoid compounds, notably bacteriorhodopsin. Halophiles can be found in water bodies with salt concentration more than five times greater than that of the ocean, such as the Great Salt Lake in Utah, Owens Lake in California, the Urmia Lake in Iran, the Dead Sea, and in evaporation ponds. They are theorized to be a possible analogues for modeling extremophiles that might live in the salty subsurface water ocean of Jupiter's Europa and similar moons. Classification Halophiles are categorized by the extent of their halotolerance: slight, moderate, or extreme. Slight halophiles prefer 0.3 to 0.8 M (1.7 ...
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Non-motile Bacteria
Non-motile bacteria are bacteria species that lack the ability and structures that would allow them to propel themselves, under their own power, through their environment. When non-motile bacteria are cultured in a stab tube, they only grow along the stab line. If the bacteria are mobile, the line will appear diffuse and extend into the medium. The cell structures that provide the ability for locomotion are the cilia and flagella. Coliform and Streptococci are examples of non-motile bacteria as are ''Klebsiella pneumoniae'', and ''Yersinia pestis''. Motility is one characteristic used in the identification of bacteria and evidence of possessing structures: peritrichous flagella, polar flagella and/or a combination of both. Though the lack of motility might be regarded a disadvantage, some non-motile bacteria possess structures that allow their attachment to eukaryotic cells, like GI mucousal cells. Vancomycin resistant Enterococcus spp. are non-motile while vancomycin suscept ...
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Dokdo
The Liancourt Rocks, also known by their Korean name of Dokdo or their Japanese name of Takeshima,; ; . form a group of islets in the Sea of Japan between the Korean peninsula and the Japanese archipelago. The Liancourt Rocks comprise two main islets and 35 smaller rocks; the total surface area of the islets is and the highest elevation of is on the West Islet. The Liancourt Rocks lie in rich fishing grounds that may contain large deposits of natural gas. The English name ''Liancourt Rocks'' is derived from , the name of a French whaling ship that came close to being wrecked on the rocks in 1849. While South Korea controls the islets, its sovereignty over them is contested by Japan. North Korea also claims the territory. South Korea classifies the islets as Dokdo- ri, Ulleung- eup, Ulleung County, North Gyeongsang Province, while Japan classifies the islands as part of Okinoshima, Oki District, Shimane Prefecture. Geography The Liancourt Rocks consist of two main i ...
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