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Dyadobacter Arcticus
Dyadobacter is a genus of Gram-negative bacteria, gram negative rod-shaped bacteria belonging to the family Spirosomaceae in the phylum Bacteroidota. Typical traits of the genus include yellow colony colour, positive flexirubin test and non-motile behaviours. They possess an anaerobic metabolism (Oxidase test, oxidase positive), can utilise a broad range of carbon sources, and test positive for Catalase#Catalase test, peroxide catalase activity. The type species is ''Dyadobacter fermentans'', which was isolated from surface sterilised maize leaves, (apparently named after its ability to ferment glucose and fructose). Species of ''Dyadobacter'' have been isolated from a diverse range of environments worldwide, including glacial ice, seawater and factories, however a large number of the currently described species belonging to the genus ''Dyadobacter'' have been isolated from soil communities. Several studies observing the microbiome associated with plants have identified ''Dyadobac ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Species
A species () is often defined as the largest group of organisms in which any two individuals of the appropriate sexes or mating types can produce fertile offspring, typically by sexual reproduction. It is the basic unit of Taxonomy (biology), classification and a taxonomic rank of an organism, as well as a unit of biodiversity. Other ways of defining species include their karyotype, DNA sequence, morphology (biology), morphology, behaviour, or ecological niche. In addition, palaeontologists use the concept of the chronospecies since fossil reproduction cannot be examined. The most recent rigorous estimate for the total number of species of eukaryotes is between 8 and 8.7 million. About 14% of these had been described by 2011. All species (except viruses) are given a binomial nomenclature, two-part name, a "binomen". The first part of a binomen is the name of a genus to which the species belongs. The second part is called the specific name (zoology), specific name or the specific ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Dyadobacter Soli
''Dyadobacter soli'' is a Gram-negative, aerobic and non-motile bacterium from the genus of Dyadobacter which has been isolated from farm soil near Daejeon in Korea. ''Dyadobacter soli'' has the ability to degrade starch Starch or amylum is a polymeric carbohydrate consisting of numerous glucose units joined by glycosidic bonds. This polysaccharide is produced by most green plants for energy storage. Worldwide, it is the most common carbohydrate in human diet ... References External linksType strain of ''Dyadobacter soli'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Cytophagia Bacteria described in 2010 {{Bacteroidota-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Microbial Biodegradation
Microbial biodegradation is the use of bioremediation and biotransformation methods to harness the naturally occurring ability of microbial xenobiotic metabolism to degrade, transform or accumulate environmental pollutants, including hydrocarbons (e.g. oil), polychlorinated biphenyls (PCBs), polyaromatic hydrocarbons (PAHs), heterocyclic compounds (such as pyridine or quinoline), pharmaceutical substances, radionuclides and metals. Interest in the microbial biodegradation of pollutants has intensified in recent years, and recent major methodological breakthroughs have enabled detailed genomic, metagenomic, proteomic, bioinformatic and other high-throughput analyses of environmentally relevant microorganisms, providing new insights into biodegradative pathways and the ability of organisms to adapt to changing environmental conditions. Biological processes play a major role in the removal of contaminants and take advantage of the catabolic versatility of microorganisms to degrade or ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bioremediation
Bioremediation broadly refers to any process wherein a biological system (typically bacteria, microalgae, fungi in mycoremediation, and plants in phytoremediation), living or dead, is employed for removing environmental pollutants from air, water, soil, fuel gasses, industrial effluents etc., in natural or artificial settings. The natural ability of organisms to adsorb, accumulate, and degrade common and emerging pollutants has attracted the use of biological resources in treatment of contaminated environment. In comparison to conventional physicochemical treatment methods bioremediation may offer advantages as it aims to be sustainable, eco-friendly, cheap, and scalable. This technology is rarely implemented however because it is slow or inefficient. Most bioremediation is inadvertent, involving native organisms. Research on bioremediation is heavily focused on stimulating the process by inoculation of a polluted site with organisms or supplying nutrients to promote their growt ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Phyllosphere
In microbiology, the phyllosphere is the total above-ground surface of a plant when viewed as a habitat for microorganisms.Leveau, Johan H.J. (2006"Microbial communities in the phyllosphere" In: Riederer M. and Müller C. (Eds) ''Biology of the Plant Cuticle'', chapter 11, pages 334–367. The phyllosphere can be further subdivided into the caulosphere (stems), phylloplane (leaves), anthosphere (flowers), and carposphere (fruits). The below-ground microbial habitats (i.e. the thin-volume of soil surrounding root or subterranean stem surfaces) are referred to as the rhizosphere and laimosphere. Most plants host diverse communities of microorganisms including bacteria, fungi, archaea, and protists. Some are beneficial to the plant, while others function as plant pathogens and may damage the host plant or even kill it. The phyllosphere microbiome The leaf surface, or phyllosphere, harbours a microbiome comprising diverse communities of bacteria, archaea, fungi, algae and viruses ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Catalase
Catalase is a common enzyme found in nearly all living organisms exposed to oxygen (such as bacteria, plants, and animals) which catalyzes the decomposition of hydrogen peroxide to water and oxygen. It is a very important enzyme in protecting the cell from oxidative damage by reactive oxygen species (ROS). Catalase has one of the highest turnover numbers of all enzymes; one catalase molecule can convert millions of hydrogen peroxide molecules to water and oxygen each second. Catalase is a tetramer of four polypeptide chains, each over 500 amino acids long. It contains four iron-containing heme groups that allow the enzyme to react with hydrogen peroxide. The optimum pH for human catalase is approximately 7, and has a fairly broad maximum: the rate of reaction does not change appreciably between pH 6.8 and 7.5. The pH optimum for other catalases varies between 4 and 11 depending on the species. The optimum temperature also varies by species. Structure Human catalase for ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Oxidase Test
The oxidase test is used to determine whether an organism possesses the cytochrome c oxidase enzyme. The test is used as an aid for the differentiation of ''Neisseria'', ''Moraxella'', ''Campylobacter'' and ''Pasteurella'' species (oxidase positive). It is also used to differentiate pseudomonads from related species.MacFaddin JF, editor. Biochemical Tests for Identification of Medical Bacteria. 3rd ed. Philadelphia:Lippincott Williams and Wilkins; 2000. p. 363-7 Classification Strains may be either oxidase-positive (OX+) or oxidase-negative (OX-). OX+ OX+ normally means the bacterium contains cytochrome c oxidase (also known as Complex IV) and can therefore use oxygen for energy production by converting O2 to H2O2 or H2O with an electron transfer chain. The Pseudomonadaceae are typically OX+. The Gram-negative diplococci Neisseria and Moraxella are oxidase-positive. Many Gram-negative, spiral curved rods are also oxidase-positive, which includes ''Helicobacter pylori'', ''Vibrio ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Flexirubin
Flexirubin is the main pigment in the bacteria genera '' Flexibacter'', ''Flavobacterium'', '' Chryseobacterium'', and ''Cytophaga''.Reichenbach, H., W. Kohl, et al. (1980). ''FLEXIRUBIN-TYPE PIGMENTS IN FLAVOBACTERIUM''. Archives of Microbiology 126(3): 291–293. It was isolated for the first time from '' Flexibacter elegans''. Flexirubin is found in these genera, as well as those that produce carotenoids. The pigment mixture of flexirubin and carotenoids imparts colonies with an intense yellow-orange color.Hans Achenbach, W. Kohl, et al. (1976). ''INVESTIGATIONS ON METABOLITES OF MICROORGANISMS .11. FLEXIRUBIN, A NOVEL PIGMENT FROM FLEXIBACTER-ELEGANS''. Chemische Berichte-Recueil 109(7): 2490–2502. Structurally, this bacteria pigment is based on a polycarboxylic-chromophore that is linked with a phenol by an ester, resulting in an alkyl side-chain. The first total synthesis of flexirubin was reported in 1977.Achenbach, H. and J. Witzke (1977). ''TOTAL SYNTHESIS OF FLEXIRUBIN D ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Bacteroidota
The phylum (biology), phylum Bacteroidota (synonym Bacteroidetes) is composed of three large classes of Gram-negative bacteria, Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the environment, including in soil, sediments, and sea water, as well as in the guts and on the skin of animals. Although some ''Bacteroides'' spp. can be Opportunistic Pathogens, opportunistic pathogens, many ''Bacteroidota'' are Symbiotic bacteria, symbiotic species highly adjusted to the gastrointestinal tract. ''Bacteroides'' are highly abundant in intestines, reaching up to 1011 cells g−1 of intestinal material. They perform metabolic conversions that are essential for the host, such as degradation of proteins or complex sugar polymers. ''Bacteroidota'' colonize the gastrointestinal tract already in infants, as non-digestible Human milk oligosaccharide, oligosaccharides in mother milk support the growth of both ''Bacteroides'' and ''Bifidoba ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Spirosomaceae
''Spirosomaceae'' is a family of bacteria in the phylum Bacteroidota The phylum (biology), phylum Bacteroidota (synonym Bacteroidetes) is composed of three large classes of Gram-negative bacteria, Gram-negative, nonsporeforming, anaerobic or aerobic, and rod-shaped bacteria that are widely distributed in the envir .... Genera The family ''Spirosomaceae'' comprises the following genera: * '' Arcicella'' Nikitin ''et al''. 2004 * '' Arcticibacterium'' Li ''et al''. 2017 * '' Arsenicibacter'' Huang ''et al''. 2017 * '' Dyadobacter'' Chelius and Triplett 2000 * '' Emticicia'' Saha and Chakrabarti 2006 * '' Fibrella'' Filippini ''et al''. 2011 * '' Fibrisoma'' Filippini ''et al''. 2011 * '' Flectobacillus'' Larkin ''et al''. 1977 (Approved Lists 1980) * '' Fluviimonas'' Sheu ''et al''. 2013 * '' Huanghella'' Jiang ''et al''. 2013 * '' Jiulongibacter'' Liu ''et al''. 2016 * '' Lacihabitans'' Joung ''et al''. 2014 * '' Larkinella'' Vancanneyt ''et al''. 2006 * '' Leadbetterella'' Weo ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Gram-negative Bacteria
Gram-negative bacteria are bacteria that, unlike gram-positive bacteria, do not retain the Crystal violet, crystal violet stain used in the Gram staining method of bacterial differentiation. Their defining characteristic is that their cell envelope consists of a thin peptidoglycan gram-negative cell wall, cell wall sandwiched between an inner (Cytoplasm, cytoplasmic) Cell membrane, membrane and an Bacterial outer membrane, outer membrane. These bacteria are found in all environments that support life on Earth. Within this category, notable species include the model organism ''Escherichia coli'', along with various pathogenic bacteria, such as ''Pseudomonas aeruginosa'', ''Chlamydia trachomatis'', and ''Yersinia pestis''. They pose significant challenges in the medical field due to their outer membrane, which acts as a protective barrier against numerous Antibiotic, antibiotics (including penicillin), Detergent, detergents that would normally damage the inner cell membrane, and the ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Dyadobacter Tibetensis
''Dyadobacter tibetensis'' is a Gram-negative, aerobic, rod-shaped and non-motile bacterium from the genus of Dyadobacter which has been isolated from a glacial ice core from the Tibetan Plateau in China China, officially the People's Republic of China (PRC), is a country in East Asia. With population of China, a population exceeding 1.4 billion, it is the list of countries by population (United Nations), second-most populous country after .... References External linksType strain of ''Dyadobacter tibetensis'' at Bac''Dive'' - the Bacterial Diversity Metadatabase Cytophagia Bacteria described in 2013 {{Bacteroidota-stub ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
