Demequina Sediminicola
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Demequina Sediminicola
''Demequina'' is a genus of bacteria in the phylum Actinomycetota. Etymology The name ''Demequina'' derives from: : Neo-Latin feminine gender noun ''Demequina'', arbitrary name derived from demethylmenaquinone, an unusual quinone found in this organism. Species ''Demequina'' comprises the following species: * '' D. activiva'' Park ''et al''. 2015 * ''D. aestuarii'' Yi ''et al''. 2007 * '' D. aurantiaca'' Ue ''et al''. 2011 * '' D. flava'' Hamada ''et al''. 2013 * '' D. gelatinilytica'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. globuliformis'' Ue ''et al''. 2011 * '' D. iriomotensis'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. litorisediminis'' Park ''et al''. 2016 * '' D. lutea'' Finster ''et al''. 2009 * '' D. mangrovi'' (Hamada ''et al''. 2012) Nouioui ''et al''. 2018 * '' D. maris'' Nouioui ''et al''. 2018 * '' D. oxidasica'' Ue ''et al''. 2011 * '' D. pelophila'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. phytophila'' Nouioui ''et ...
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Demequina Aestuarii
''Demequina aestuarii'' is a bacterium from the genus of ''Demequina'' which has been isolated from tidal flat sediments from Korea. References Micrococcales Bacteria described in 2007 {{Actinobacteria-stub ...
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Demequina Oxidasica
''Demequina'' is a genus of bacteria in the phylum Actinomycetota. Etymology The name ''Demequina'' derives from: : Neo-Latin feminine gender noun ''Demequina'', arbitrary name derived from demethylmenaquinone, an unusual quinone found in this organism. Species ''Demequina'' comprises the following species: * '' D. activiva'' Park ''et al''. 2015 * ''D. aestuarii'' Yi ''et al''. 2007 * '' D. aurantiaca'' Ue ''et al''. 2011 * '' D. flava'' Hamada ''et al''. 2013 * '' D. gelatinilytica'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. globuliformis'' Ue ''et al''. 2011 * '' D. iriomotensis'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. litorisediminis'' Park ''et al''. 2016 * '' D. lutea'' Finster ''et al''. 2009 * '' D. mangrovi'' (Hamada ''et al''. 2012) Nouioui ''et al''. 2018 * '' D. maris'' Nouioui ''et al''. 2018 * '' D. oxidasica'' Ue ''et al''. 2011 * '' D. pelophila'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. phytophila'' Nouioui ''et ...
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Bacterial Taxonomy
Bacterial taxonomy is subfield of taxonomy devoted to the classification of bacteria specimens into taxonomic ranks. Archaeal taxonomy are governed by the same rules. In the scientific classification established by Carl Linnaeus, each species is assigned to a genus resulting in a two-part name. This name denotes the two lowest levels in a hierarchy of ranks, increasingly larger groupings of species based on common traits. Of these ranks, domains are the most general level of categorization. Presently, scientists classify all life into just three domains, Eukaryotes, Bacteria and Archaea. Bacterial taxonomy is the classification of strains within the domain Bacteria into hierarchies of similarity. This classification is similar to that of plants, mammals, and other taxonomies. However, biologists specializing in different areas have developed differing taxonomic conventions over time. For example, bacterial taxonomists name types based on descriptions of strains. Zoologists am ...
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Silva Comprehensive Ribosomal RNA Database
SILVA is a ribosomal RNA database established in collaboration between the Microbial Genomics Group at the Max Planck Institute for Marine Microbiology in Bremen, Germany, the Department of Microbiology at the Technical University Munich The Technical University of Munich (TUM or TU Munich; ) is a Public university, public research university in Munich, Bavaria, Germany. It specializes in engineering, technology, medicine, and applied science, applied and natural sciences. Est ..., and Ribocon. Release 117 of the database (January 2014) held more than 4,000,000 small subunit (SSU - 16S/ 18S) and 400,000 large subunit (LSU - 23S/ 28S) sequences. Sequences are provided as files for the ARB software environment. See also * References {{reflist, refs= Marc P. Hoeppner, Lars E. Barquist, Paul P. Gardner (2014)An Introduction to RNA Databases ''Methods in Molecular Biology'' 1097: 107–123. {{doi, 10.1007/978-1-62703-709-9_6.
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All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded off for size and many phylum level clades are not correctly resolved (such as the Firmicutes). (Eukaryotes ...
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Demequina Subtropica
''Demequina'' is a genus of bacteria in the phylum Actinomycetota. Etymology The name ''Demequina'' derives from: : Neo-Latin feminine gender noun ''Demequina'', arbitrary name derived from demethylmenaquinone, an unusual quinone found in this organism. Species ''Demequina'' comprises the following species: * '' D. activiva'' Park ''et al''. 2015 * ''D. aestuarii'' Yi ''et al''. 2007 * '' D. aurantiaca'' Ue ''et al''. 2011 * '' D. flava'' Hamada ''et al''. 2013 * '' D. gelatinilytica'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. globuliformis'' Ue ''et al''. 2011 * '' D. iriomotensis'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. litorisediminis'' Park ''et al''. 2016 * '' D. lutea'' Finster ''et al''. 2009 * '' D. mangrovi'' (Hamada ''et al''. 2012) Nouioui ''et al''. 2018 * '' D. maris'' Nouioui ''et al''. 2018 * '' D. oxidasica'' Ue ''et al''. 2011 * '' D. pelophila'' (Hamada ''et al''. 2015) Nouioui ''et al''. 2018 * '' D. phytophila'' Nouioui ''et ...
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