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Candidatus Melainobacteriota
"''Candidatus'' Melainobacteriota" is a Monotypic taxon, monotypic phylum of bacteria that is the Sister group, sister phylum of the phylum Cyanobacteria (named under the ''International Code of Nomenclature for algae, fungi, and plants, Botanical Code''). It has one Class (biology), class Vampirovibrionophyceae. ''Vampirovibrio chlorellavorus'' is the only species of the phylum that has been grown in cell culture. ''Candidatus'' species of melainabacteria have been discovered through DNA and RNA sequence analysis of samples from soil, the human gut, and various aquatic habitats such as groundwater. By analyzing genomes of melainabacteria, predictions are possible about their cell structure and metabolic abilities. The deduced structure of the bacterial cell is similar to cyanobacteria in being surrounded by two membranes. It differs from cyanobacteria in its predicted ability to move by flagellum, flagella (like gram-negative flagella), though some members (e.g. Gastranaerophil ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Scanning Electron Micrograph
A scanning electron microscope (SEM) is a type of electron microscope that produces images of a sample by scanning the surface with a focused beam of electrons. The electrons interact with atoms in the sample, producing various signals that contain information about the surface topography and composition. The electron beam is scanned in a raster scan pattern, and the position of the beam is combined with the Intensity (physics), intensity of the detected signal to produce an image. In the most common SEM mode, secondary electrons emitted by atoms excited by the electron beam are detected using a secondary electron detector (Everhart–Thornley detector). The number of secondary electrons that can be detected, and thus the signal intensity, depends, among other things, on specimen topography. Some SEMs can achieve resolutions better than 1 Nanometre, nanometer. Specimens are observed in high vacuum in a Convention (norm), conventional SEM, or in low vacuum or wet conditions in ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Cell Culture
Cell culture or tissue culture is the process by which cell (biology), cells are grown under controlled conditions, generally outside of their natural environment. After cells of interest have been Cell isolation, isolated from living tissue, they can subsequently be maintained under carefully controlled conditions. They need to be kept at body temperature (37 °C) in an incubator. These conditions vary for each cell type, but generally consist of a suitable vessel with a substrate or rich growth medium, medium that supplies the essential nutrients (amino acids, carbohydrates, vitamins, minerals), growth factors, hormones, and gases (Carbon dioxide, CO2, Oxygen, O2), and regulates the physio-chemical environment (Buffer solution, pH buffer, osmotic pressure, temperature). Most cells require a surface or an artificial substrate to form an adherent culture as a monolayer (one single-cell thick), whereas others can be grown free floating in a medium as a suspension culture. T ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Sericytochromatia
Cyanobacteria ( ) are a group of autotrophic gram-negative bacteria that can obtain biological energy via oxygenic photosynthesis. The name "cyanobacteria" () refers to their bluish green (cyan) color, which forms the basis of cyanobacteria's informal common name, blue-green algae. Cyanobacteria are probably the most numerous taxon to have ever existed on Earth and the first organisms known to have produced oxygen, having appeared in the middle Archean eon and apparently originated in a freshwater or terrestrial environment. Their photopigments can absorb the red- and blue-spectrum frequencies of sunlight (thus reflecting a greenish color) to split water molecules into hydrogen ions and oxygen. The hydrogen ions are used to react with carbon dioxide to produce complex organic compounds such as carbohydrates (a process known as carbon fixation), and the oxygen is released as a byproduct. By continuously producing and releasing oxygen over billions of years, cyanobacteria are t ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Vampirovibrio
''Vampirovibrio chlorellavorus'' is a 0.6 μm pleomorphic coccus with a gram negative cell wall, This book cites this research: and is one of the few known predatory bacteria. These secondary sources cite this research: Unlike many bacteria, ''V. chlorellavorus'' is an obligate parasite, attaching to the cell wall of green algae of the genus ''Chlorella''. The name ''Vampirovibrio'' originates from the Serbian (Cyrillic: ). meaning vampire (due to the nature of sucking out cellular contents of its prey) and ''vibrio'' referring to the bacterial genus of curved rod bacterium. ''Chlorellavorus'' is named for the algal host of the bacterium (''Chlorella'') and the Latin meaning "to devour" (''Chlorella''-devouring)."Vampirovibrio." List of Prokaryotic Names with Standing in Nomenclature. Web. Classification The bacterium, first described by Gromov and Mamkayeva in 1972, was originally classified in the genus ''Bdellovibrio''."Vampirovibrio Chlorellavorus Gromov & Mamkayev ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Genome Taxonomy Database
The Genome Taxonomy Database (GTDB) is an online database that maintains information on a proposed nomenclature of prokaryotes, following a phylogenomic approach based on a set of conserved single-copy proteins. In addition to resolving paraphyletic groups, this method also reassigns taxonomic ranks algorithmically, updating names in both cases. Information for archaea was added in 2020, along with a species classification based on average nucleotide identity. Each update incorporates new genomes as well as automated and manual curation of the taxonomy. An open-source tool called GTDB-Tk is available to classify draft genomes into the GTDB hierarchy. The GTDB system, via GTDB-Tk, has been used to catalogue not-yet-named bacteria in the human gut microbiome and other metagenomic sources. The GTDB is incorporated into the '' Bergey's Manual of Systematics of Archaea and Bacteria'' in 2019 as its phylogenomic resource. Methodology The genomes used to construct the phyloge ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
The All-Species Living Tree Project
The All-Species Living Tree' Project is a collaboration between various academic groups/institutes, such as ARB, SILVA rRNA database project, and LPSN, with the aim of assembling a database of 16S rRNA sequences of all validly published species of ''Bacteria'' and ''Archaea''. At one stage, 23S sequences were also collected, but this has since stopped. Currently there are over 10,950 species in the aligned dataset and several more are being added either as new species are discovered or species that are not represented in the database are sequenced. Initially the latter group consisted of 7% of species. Similar (and more recent) projects include the Genomic Encyclopedia of Bacteria and Archaea (GEBA), which focused on whole genome sequencing of bacteria and archaea. Tree The tree was created by maximum likelihood analysis without bootstrap: consequently accuracy is traded off for size and many phylum level clades are not correctly resolved (such as the Firmicutes). (Eukaryote ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Taxonomic Rank
In biology, taxonomic rank (which some authors prefer to call nomenclatural rank because ranking is part of nomenclature rather than taxonomy proper, according to some definitions of these terms) is the relative or absolute level of a group of organisms (a ''taxon'') in a hierarchy that reflects evolutionary relationships. Thus, the most inclusive clades (such as Eukarya and Animalia) have the highest ranks, whereas the least inclusive ones (such as ''Homo sapiens'' or ''Bufo bufo'') have the lowest ranks. Ranks can be either relative and be denoted by an indented taxonomy in which the level of indentation reflects the rank, or absolute, in which various terms, such as species, genus, Family (biology), family, Order (biology), order, Class (biology), class, Phylum (biology), phylum, Kingdom (biology), kingdom, and Domain (biology), domain designate rank. This page emphasizes absolute ranks and the rank-based codes (the International Code of Zoological Nomenclature, Zoological Code, ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Valid Publication
In botanical nomenclature, a validly published name is a name that meets the requirements in the ''International Code of Nomenclature for algae, fungi, and plants'' (''ICN'') for valid publication. Valid publication of a name represents the minimum requirements for a botanical name to exist: terms that appear to be names but have not been validly published are referred to in the ''ICN'' as "designations". A validly published name may not satisfy all the requirements to be '' legitimate''. It is also not necessarily the correct name for a particular taxon and rank. Names that are not valid by ICN standards (''nomen invalidum'', ''nom. inval.'') are sometimes in use. This may occur when a taxonomist finds and recognises a taxon and thinks of a name, but delays publishing it in an adequate manner. A common reason to delay valid publication is that a taxonomist intends to write a ''magnum opus'' that provides an overview of the group, rather than a series of small papers. Another re ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Fermentation
Fermentation is a type of anaerobic metabolism which harnesses the redox potential of the reactants to make adenosine triphosphate (ATP) and organic end products. Organic molecules, such as glucose or other sugars, are catabolized and reduced by donating their electrons to other organic molecules (cofactors, coenzymes, etc.). Fermentation is important in several areas of human society. Humans have used fermentation in the production and preservation of food for 13,000 years. It has been associated with health benefits, unique flavor profiles, and making products have better texture. Humans and their livestock also benefit from fermentation from the microbes in the gut that release end products that are subsequently used by the host for energy. Perhaps the most commonly known use for fermentation is at an industrial level to produce commodity chemicals, such as ethanol and lactate. Ethanol is used in a variety of alcoholic beverages (beers, wine, and spirits) while lactate ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
Photosynthesis
Photosynthesis ( ) is a system of biological processes by which photosynthetic organisms, such as most plants, algae, and cyanobacteria, convert light energy, typically from sunlight, into the chemical energy necessary to fuel their metabolism. ''Photosynthesis'' usually refers to oxygenic photosynthesis, a process that produces oxygen. Photosynthetic organisms store the chemical energy so produced within intracellular organic compounds (compounds containing carbon) like sugars, glycogen, cellulose and starches. To use this stored chemical energy, an organism's cells metabolize the organic compounds through cellular respiration. Photosynthesis plays a critical role in producing and maintaining the oxygen content of the Earth's atmosphere, and it supplies most of the biological energy necessary for complex life on Earth. Some bacteria also perform anoxygenic photosynthesis, which uses bacteriochlorophyll to split hydrogen sulfide as a reductant instead of water, p ... [...More Info...] [...Related Items...] OR: [Wikipedia] [Google] [Baidu] |
