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Bioinformatics Open Source Conference
The Bioinformatics Open Source Conference (BOSC) is an academic conference on open-source programming and other open science practices in bioinformatics, organised by the Open Bioinformatics Foundation. The conference has been held annually since 2000 and is run as a two-day meeting either within Intelligent Systems for Molecular Biology (ISMB) conference or as a joint conference with the Galaxy community. Program The conference is held as a single track consisting of presentations, poster sessions and two keynote talks by people of influence in open-source bioinformatics. Since 2010, an informal two-day "CollaborationFest" (formerly Codefest) has been held directly preceding the conference. History National Institutes of Health Associate Director for Data Science Philip Bourne and C. Titus Brown gave keynote talks at BOSC 2014. BOSC 2016 was organized in Orlando, Florida from July 8–9 before the main ISMB conference. In 2018 and 2020, BOSC partnered with Galaxy to o ...
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Madison, Wisconsin
Madison is the county seat of Dane County, Wisconsin, Dane County and the capital city of the U.S. state of Wisconsin. As of the 2020 United States Census, 2020 census the population was 269,840, making it the second-largest city in Wisconsin by population, after Milwaukee, and the List of United States cities by population, 80th-largest in the U.S. The city forms the core of the Madison, Wisconsin, metropolitan statistical area, Madison Metropolitan Area which includes Dane County and neighboring Iowa County, Wisconsin, Iowa, Green County, Wisconsin, Green, and Columbia County, Wisconsin, Columbia counties for a population of 680,796. Madison is named for American Founding Fathers of the United States, Founding Father and President James Madison. The city is located on the traditional land of the Ho-Chunk, and the Madison area is known as ''Dejope'', meaning "four lakes", or ''Taychopera'', meaning "land of the four lakes", in the Ho-Chunk language. Located on an isthmus and la ...
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COVID-19 Pandemic
The COVID-19 pandemic, also known as the coronavirus pandemic, is an ongoing global pandemic of coronavirus disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The novel virus was first identified in an outbreak in the Chinese city of Wuhan in December 2019. Attempts to contain it there failed, allowing the virus to spread to other areas of Asia and later COVID-19 pandemic by country and territory, worldwide. The World Health Organization (WHO) declared the outbreak a public health emergency of international concern on 30 January 2020, and a pandemic on 11 March 2020. As of , the pandemic had caused COVID-19 pandemic cases, more than cases and COVID-19 pandemic deaths, confirmed deaths, making it one of the deadliest pandemics in history, deadliest in history. COVID-19 symptoms range from Asymptomatic, undetectable to deadly, but most commonly include fever, Nocturnal cough, dry cough, and fatigue. Severe illness is more likely ...
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Wolfgang Huber (scientist)
Wolfgang Huber is a German computational biologist who serves as group leader for the Huber Group at the European Molecular Biology Laboratory (EMBL), where he is also a senior scientist. He is a founding member of Bioconductor and, alongside Sascha Dietrich, serves the joint head of the Molecular Medicine Partnership Unit The Molecular Medicine Partnership Unit is an alliance between the European Molecular Biology Laboratory and the Medical Faculty of the University of Heidelberg. Its primary aim is to uncover the molecular basis of disease and to speed the transf ...'s group Systems Medicine of Cancer Drugs. Awards and honors In 2021, Huber was elected as a Fellow of the International Society for Computational Biology. References External linksHuber Group Website* Living people 21st-century German biologists Computational biologists University of Freiburg alumni Year of birth missing (living people) {{Germany-biologist-stub ...
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Amos Bairoch
Amos Bairoch (born 22 November 1957) is a Swiss bioinformatician and Professor of Bioinformatics at the Department of Human Protein Sciences of the University of Geneva where he leads the CALIPHO group at the Swiss Institute of Bioinformatics (SIB) combining bioinformatics, curation, and experimental efforts to functionally characterize human proteins. His father was the economic historian Paul Bairoch. Education His first project as a Ph.D. student was the development of PC/Gene, an MS-DOS–based software package for the analysis of protein and nucleotide sequences. PC/Gene was commercialized, first by a Swiss company (Genofit) then by Intelligenetics in the US which was later bought by Oxford Molecular. Research His main work is in the field of protein sequence analysis and more particularly in the development of databases and software tools for this purpose. His most important contribution is the input of human knowledge by careful manual annotation in protein-related ...
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Julian Lombardi
Julian Lombardi (born November 11, 1956) is an American inventor, author, educator, and computer scientist known for his work with socio-computational systems, scalable virtual world technologies, and in the design and deployment of deeply collaborative virtual learning environments. Biography Lombardi was born to a concert pianist and an Italian actress living in New York City. His family soon moved back to Rome, Italy, where he lived until the age of six. He went on to attend Buckley Country Day School and public schools in Great Neck, New York and elsewhere on Long Island. In 1974 Lombardi began his undergraduate studies at Dowling College and graduated cum laude in the biology major and physics minor in 1977. He attended graduate school at Clemson University, where he received his MA in 1980 and was granted a PhD in zoology in 1983. Upon graduation, Lombardi accepted a postdoctoral appointment and lectureship in the biological sciences at the University of North Carolin ...
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Ross Gardler
Ross Gardler (born 10 December 1969 in Dundee, Scotland), is an open source software advocate who volunteers time to many open source projects and initiatives, in particular to the Apache Software Foundation. He has served as a VP, Director and President of the Apache Software Foundation and currently (2017) holds the title of Executive Vice President. He is a committer on a number of Apache projects, though is more often seen providing community support than code. He can also be found in other projects and foundations acting as a mentor or community contributor. Gardler's original career was as a manager and sound engineer for a well respected though "undiscovered" Dub Reggae band in Manchester, UK called C-Charge. This early music career lasted around eight years and ended with Ross selling the record label and management company he had created in order to return to formal education and study computer science in 1995. It is during these studies that Ross first became involved i ...
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Lawrence Hunter
Lawrence E. Hunter is a Professor and Director of the Center for Computational Pharmacology and of the Computational Bioscience Program at the University of Colorado School of Medicine and Professor of Computer Science at the University of Colorado Boulder. He is an internationally known scholar, focused on computational biology, knowledge-driven extraction of information from the primary biomedical literature, the semantic integration of knowledge resources in molecular biology, and the use of knowledge in the analysis of high-throughput data, as well as for his foundational work in computational biology, which led to the genesis of the major professional organization in the field and two international conferences. Education Hunter completed his PhD at Yale University in 1989 with a thesis on ''Knowledge Acquisition Planning: Gaining Expertise Through Experience'', on diagnosis of lung cancer from histological images using Case-based reasoning, under the guidance of Roger Schan ...
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Carole Goble
Carole Anne Goble, (born 10 April 1961) is a British academic who is Professor of Computer Science at the University of Manchester. She is principal investigator (PI) of the myGrid, BioCatalogue and myExperiment projects and co-leads the Information Management Group (IMG) with Norman Paton. Education Goble was educated at Maidstone School for Girls. Her academic career has been spent at the Department of Computer Science where she gained her Bachelor of Science degree in computing and information systems from 1979 to 1982. Research and career Her current research interests include Grid computing, the Semantic Grid, the Semantic Web, Ontologies, e-Science, medical informatics, Bioinformatics, and Research Objects. She applies advances in knowledge technologies and workflow systems to solve information management problems for life scientists and other scientific disciplines. She has successfully secured funding from the European Union, the Defense Advanced Researc ...
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Jonathan Eisen
Jonathan Andrew Eisen (born August 31, 1968) is an American evolutionary biologist, currently working at University of California, Davis. His academic research is in the fields of evolutionary biology, genomics and microbiology and he is the academic editor-in-chief of the open access journal ''PLOS Biology''. Education Eisen completed his undergraduate studies at Harvard College in 1990, earning an AB degree in biology. He graduated as a Doctor of Philosophy from Stanford University in 1998 with a thesis on the evolution of DNA repair genes, proteins, and processes in 1998, supervised by Philip Hanawalt. Research Eisen's research focuses on the origin of novelty, how new processes and functions originate in living things. To study this, he focuses on sequencing and analyzing genomes of organisms, especially microbes and using phylogenomic analysis. Eisen together with Nick Barton, Derek E.G. Briggs, David B. Goldstein, and Nipam H. Patel is an author of the undergraduat ...
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Cameron Neylon
David Cameron Neylon is an advocate for open access and Professor of Research Communications at thCentre for Culture and Technologyat Curtin University. From 2012 - 2015 they were the Advocacy Director at the Public Library of Science. Education Neylon was educated at the University of Western Australia and the Australian National University where they were awarded a Doctor of Philosophy degree in Biophysics in 1999 for work on directed molecular evolution and DNA-binding specificity. Career In 2009 Neylon was a senior scientist at the ISIS neutron source of the Science and Technology Facilities Council. From 2012 to 2015 they served as director of advocacy at the Public Library of Science. They joined The Centre for Culture and Technology (CCAT) at Curtin University in 2015 as Professor of Research Communications. Neylon is an original drafter of the Panton Principles and opposed the Research Works Act and advocates for governmental encouragement for researchers to use open ...
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Sean Eddy
Sean Roberts Eddy is Professor of Molecular & Cellular Biology and of Applied Mathematics at Harvard University. Previously he was based at the Janelia Research Campus from 2006 to 2015 in Virginia. His research interests are in bioinformatics, computational biology and biological sequence analysis. projects include the use of Hidden Markov models in HMMER, Infernal Pfam and Rfam. Education Eddy graduated June, 1982 from Marion Center Area High School, Marion Center, Pennsylvania. He then completed a Bachelor of Science in Biology at California Institute of Technology in 1986, followed by a Doctor of Philosophy in molecular biology at the University of Colorado under the supervision of Larry Gold in 1991 studying the T4 phage. Career From 1992 to 1995 he was a postdoctoral research fellow at the Medical Research Council (MRC) Laboratory of Molecular Biology (LMB) in Cambridge UK working with John Sulston and Richard Durbin. From 1995 to 2007 he worked at Washington Unive ...
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Tracy Teal
Tracy Teal is an American bioinformatician and the executive director of Data Carpentry. She is known for her work in open science and biomedical data science education. Education and early career Teal received her Bachelors of Science in Cybernetics from the University of California, Los Angeles in 1997 and later received her Master of Arts in Organismal Biology, Ecology, and Evolution in 1999. There, she worked in the laboratory of Charles Taylor, studying how the evolution of language is impacted by the way people learn it. She then earned her PhD from the California Institute of Technology in Computation and Neural Systems in 2007. She did her thesis work under the laboratories of Dianne Newman and Barbara Wold, studying the metabolic organization of bacterial biofilms. After graduate school, Teal became a National Science Foundation Postdoctoral Fellow at Michigan State University, where she studied how the ecology of microbial communities in soil can change levels of ...
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