Ectomycorrhizal
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An ectomycorrhiza (from Greek ἐκτός ', "outside", μύκης ', "fungus", and ῥίζα ', "root"; pl. ectomycorrhizas or ectomycorrhizae, abbreviated EcM) is a form of symbiotic relationship that occurs between a fungal symbiont, or
mycobiont A lichen ( , ) is a composite organism that arises from algae or cyanobacteria living among filaments of multiple fungi species in a mutualistic relationship.root In vascular plants, the roots are the organs of a plant that are modified to provide anchorage for the plant and take in water and nutrients into the plant body, which allows plants to grow taller and faster. They are most often below the su ...
s of various
plant Plants are predominantly photosynthetic eukaryotes of the kingdom Plantae. Historically, the plant kingdom encompassed all living things that were not animals, and included algae and fungi; however, all current definitions of Plantae excl ...
species In biology, a species is the basic unit of classification and a taxonomic rank of an organism, as well as a unit of biodiversity. A species is often defined as the largest group of organisms in which any two individuals of the appropriat ...
. The mycobiont is often from the
phyla Phyla, the plural of ''phylum'', may refer to: * Phylum, a biological taxon between Kingdom and Class * by analogy, in linguistics, a large division of possibly related languages, or a major language family which is not subordinate to another Phy ...
Basidiomycota and Ascomycota, and more rarely from the Zygomycota. Ectomycorrhizas form on the roots of around 2% of plant species, usually woody plants, including species from the
birch A birch is a thin-leaved deciduous hardwood tree of the genus ''Betula'' (), in the family Betulaceae, which also includes alders, hazels, and hornbeams. It is closely related to the beech- oak family Fagaceae. The genus ''Betula'' cont ...
, dipterocarp, myrtle, beech, willow,
pine A pine is any conifer tree or shrub in the genus ''Pinus'' () of the family (biology), family Pinaceae. ''Pinus'' is the sole genus in the subfamily Pinoideae. The World Flora Online created by the Royal Botanic Gardens, Kew and Missouri Botanic ...
and
rose A rose is either a woody perennial flowering plant of the genus ''Rosa'' (), in the family Rosaceae (), or the flower it bears. There are over three hundred species and tens of thousands of cultivars. They form a group of plants that can be ...
families. Research on ectomycorrhizas is increasingly important in areas such as
ecosystem management Ecosystem management is an approach to natural resource management that aims to ensure the long-term sustainability and persistence of an ecosystems function and services while meeting socioeconomic, political, and cultural needs. Although indig ...
and restoration,
forestry Forestry is the science and craft of creating, managing, planting, using, conserving and repairing forests, woodlands, and associated resources for human and environmental benefits. Forestry is practiced in plantations and natural stands. ...
and
agriculture Agriculture or farming is the practice of cultivating plants and livestock. Agriculture was the key development in the rise of sedentary human civilization, whereby farming of domesticated species created food surpluses that enabled people ...
. Unlike other mycorrhizal relationships, such as arbuscular mycorrhiza and ericoid mycorrhiza, ectomycorrhizal fungi do not penetrate their host's
cell walls A cell wall is a structural layer surrounding some types of cells, just outside the cell membrane. It can be tough, flexible, and sometimes rigid. It provides the cell with both structural support and protection, and also acts as a filtering mech ...
. Instead they form an entirely intercellular interface known as the Hartig net, consisting of highly branched hyphae forming a latticework between epidermal and cortical root cells. Ectomycorrhizas are further differentiated from other mycorrhizas by the formation of a dense hyphal sheath, known as the mantle, surrounding the root surface. This sheathing mantle can be up to 40 
µm The micrometre ( international spelling as used by the International Bureau of Weights and Measures; SI symbol: μm) or micrometer ( American spelling), also commonly known as a micron, is a unit of length in the International System of Uni ...
thick, with hyphae extending up to several centimeters into the surrounding soil. The hyphal network helps the plant to take up nutrients including water and minerals, often helping the host plant to survive adverse conditions. In exchange, the fungal symbiont is provided with access to carbohydrates. Well known EcM fungal fruiting bodies include the economically important and edible truffle ( ''Tuber'') and the deadly death caps and destroying angels (''
Amanita The genus ''Amanita'' contains about 600 species of agarics, including some of the most toxic known mushrooms found worldwide, as well as some well-regarded edible species. This genus is responsible for approximately 95% of the fatalities resul ...
'').


Evolution

Mycorrhizal symbioses are ubiquitous in terrestrial ecosystems, and it is possible that these associations helped to facilitate land colonization by plants. There is
paleobiological Paleobiology (or palaeobiology) is an interdisciplinary field that combines the methods and findings found in both the earth sciences and the life sciences. Paleobiology is not to be confused with geobiology, which focuses more on the intera ...
and molecular evidence that arbuscular mycorrhizas (AM) originated at least 460 million years ago. EcM plants and fungi exhibit a wide taxonomic distribution across all continents (apart from Antarctica), suggesting that the EcM symbiosis has ancient
evolution Evolution is change in the heritable characteristics of biological populations over successive generations. These characteristics are the expressions of genes, which are passed on from parent to offspring during reproduction. Variation ...
ary roots. Pinaceae is the oldest extant plant family in which symbiosis with EcM fungi occurs, and fossils from this family date back to 156 million years ago. It has been proposed that
habitat In ecology, the term habitat summarises the array of resources, physical and biotic factors that are present in an area, such as to support the survival and reproduction of a particular species. A species habitat can be seen as the physical ...
type and the distinct functions of different mycorrhizas help determine which type of symbiosis is predominant in a given area. In this theory, EcM symbioses evolved in ecosystems such as boreal forests that are relatively productive but in which
nutrient cycling A nutrient cycle (or ecological recycling) is the movement and exchange of inorganic and organic matter back into the production of matter. Energy flow is a unidirectional and noncyclic pathway, whereas the movement of mineral nutrients is cycli ...
is still limiting. Ectomycorrhizas are intermediate in their ability to take up nutrients, being more efficient than arbuscular mycorrhizas and less so than ericoid mycorrhizas, making them useful in an intermediate nutrient situation.


Paleobiology

Fungi are composed of
soft tissues Soft tissue is all the tissue in the body that is not hardened by the processes of ossification or calcification such as bones and teeth. Soft tissue connects, surrounds or supports internal organs and bones, and includes muscle, tendons, liga ...
, making
fossil A fossil (from Classical Latin , ) is any preserved remains, impression, or trace of any once-living thing from a past geological age. Examples include bones, shells, exoskeletons, stone imprints of animals or microbes, objects preserved ...
ization difficult and the discovery of fungal fossils rare. However, some exquisitely preserved specimens have been discovered in the middle
Eocene The Eocene ( ) Epoch is a geological epoch that lasted from about 56 to 33.9 million years ago (mya). It is the second epoch of the Paleogene Period in the modern Cenozoic Era. The name ''Eocene'' comes from the Ancient Greek (''ēṓs'', ...
Princeton Chert The Princeton Chert is a fossil locality in British Columbia, Canada, which comprises an anatomically preserved flora of Eocene Epoch age, with rich species abundance and diversity. It is located in exposures of the Allenby Formation on the east ...
of
British Columbia British Columbia (commonly abbreviated as BC) is the westernmost province of Canada, situated between the Pacific Ocean and the Rocky Mountains. It has a diverse geography, with rugged landscapes that include rocky coastlines, sandy beaches, for ...
. These ectomycorrhizal fossils show clear evidence of a Hartig net, mantle and hyphae, demonstrating well-established EcM associations at least 50 million years ago. The fossil record shows that the more common arbuscular mycorrhizas formed long before other types of fungal-plant symbioses. Ectomycorrhizas may have evolved with the diversification of plants and the evolution of conifers and
angiosperms Flowering plants are plants that bear flowers and fruits, and form the clade Angiospermae (), commonly called angiosperms. The term "angiosperm" is derived from the Greek words ('container, vessel') and ('seed'), and refers to those plants ...
. Arbuscular mycorrhizas may thus have been a driving force in the plant colonization of land, while ectomycorrhizas may have arisen either in response to further speciation as the earth's climate became more seasonal and arid, or perhaps simply in response to nutritionally deficient habitats.Allen, Michael F. The ecology of mycorrhizae. Cambridge University Press, 1991.


Molecular studies

Molecular and
phylogenetic In biology, phylogenetics (; from Greek φυλή/ φῦλον [] "tribe, clan, race", and wikt:γενετικός, γενετικός [] "origin, source, birth") is the study of the evolutionary history and relationships among or within groups ...
analyses of fungal lineages suggest that EcM fungi have evolved and persisted numerous times from non-EcM ancestors such as humus and wood
saprotrophic Saprotrophic nutrition or lysotrophic nutrition is a process of chemoheterotrophic extracellular digestion involved in the processing of decayed (dead or waste) organic matter. It occurs in saprotrophs, and is most often associated with fungi ...
fungi. The estimates range from 7-16 to ~66 independent evolutions of EcM associations. Some studies suggest that reversals back to the ancestral free-living condition have occurred, but this is controversial.


Morphology

As suggested by the name, the biomass of the mycosymbiont is mostly exterior to the plant root. The fungal structure is composed primarily of three parts: 1) the intraradical hyphae making up the Hartig net; 2) the mantle that forms a sheath surrounding the root tip; and 3) the extraradical hyphae and related structures that spread throughout the soil.


Hartig net

The Hartig net is formed by an ingrowth of hyphae (often originating from the inner part of the surrounding mantle) into the root of the plant host. The hyphae penetrate and grow in a transverse direction to the axis of the root, and thus form a network between the outer cells of the root axis. In this region fungal and root cells touch, and this is where nutrient and
carbon Carbon () is a chemical element with the symbol C and atomic number 6. It is nonmetallic and tetravalent—its atom making four electrons available to form covalent chemical bonds. It belongs to group 14 of the periodic table. Carbon ma ...
exchange occurs.Dighton, J. "Mycorrhizae." Encyclopedia of Microbiology (2009): 153-162. The depth of penetration differs between species. In ''
Eucalyptus ''Eucalyptus'' () is a genus of over seven hundred species of flowering trees, shrubs or mallees in the myrtle family, Myrtaceae. Along with several other genera in the tribe Eucalypteae, including '' Corymbia'', they are commonly known as ...
'' and ''
Alnus Alders are trees comprising the genus ''Alnus'' in the birch family Betulaceae. The genus comprises about 35 species of monoecious trees and shrubs, a few reaching a large size, distributed throughout the north temperate zone with a few s ...
'' the Hartig net is confined to the epidermis, whereas in most gymnosperms the hyphae penetrate more deeply, into the cortical cells or the
endodermis The endodermis is the central, innermost layer of cortex in land plants. It is a cylinder of compact living cells, the radial walls of which are impregnated with hydrophobic substances (Casparian strip) to restrict apoplastic flow of water to th ...
. In many epidermal types elongation of cells along the epidermis occurs, increasing surface contact between fungus and root cells. Most cortical type Hartig nets do not show this elongation, suggesting different strategies for increasing surface contact among species.


Mantle

A hyphal sheath known as the mantle, which often has more biomass than the Hartig net interface, envelops the root. The structure of the mantle is variable, ranging from a loose network of hyphae to a structured and stratified arrangement of tissue. Often, these layers resemble plant parenchyma tissue and are referred to as pseudoparenchymatous. Because the root is enveloped by the mantle it is often affected developmentally. EcM fungal partners characteristically suppress root hair development of their plant symbiont. They can also increase root branching by inducing
cytokinins Cytokinins (CK) are a class of plant hormones that promote cell division, or cytokinesis, in plant roots and shoots. They are involved primarily in cell growth and differentiation, but also affect apical dominance, axillary bud growth, and lea ...
in the plant. These branching patterns can become so extensive that a single consolidated mantle can envelop many root tips at a time. Structures like this are called tuberculate or coralloid ectomycorrhizas. The mantles of different EcM pairs often display characteristic traits such as color, extent of branching, and degree of complexity which are used to help identify the fungus, often in tandem with molecular analyses. Fruiting bodies are also useful but are not always available.


Extraradical hyphae and linkage

Extraradical hyphae extend outward from the mantle into the
soil Soil, also commonly referred to as earth or dirt, is a mixture of organic matter, minerals, gases, liquids, and organisms that together support life. Some scientific definitions distinguish ''dirt'' from ''soil'' by restricting the former ...
, compensating for the suppression of root hairs by increasing the effective surface area of the colonized root. These hyphae can spread out singly, or in an aggregate arrangement known as a
rhizomorph Mycelial cords are linear aggregations of parallel-oriented hyphae. The mature cords are composed of wide, empty vessel hyphae surrounded by narrower sheathing hyphae. Cords may look similar to plant roots, and also frequently have similar function ...
. These composite hyphal organs can have a wide range of structures. Some rhizomorphs are simply parallel, linear collections of hyphae. Others have more complex organization, for example the central hyphae may be larger in diameter than other hyphae, or the hyphae may grow continuously at the tip, penetrating into new areas in a way that superficially resembles meristematic activity. This part of the ectomycorrhiza, which is called the extraradical or extramatrical
mycelium Mycelium (plural mycelia) is a root-like structure of a fungus consisting of a mass of branching, thread-like hyphae. Fungal colonies composed of mycelium are found in and on soil and many other substrates. A typical single spore germinates ...
, functions largely as a transport structure. They often spread considerable distances, maintaining a large contact area with the soil. Some studies have shown a relationship between nutrient transport rates and the degree of rhizomorph organization. The rhizomorphs of different EcM types often have different organization types and exploration strategies, observed as different structure and growth within the soil. These differences also help identify the symbiotic fungus. The hyphae extending outward into the soil from an ectomycorrhiza can infect other nearby plants. Experiments and field studies show that this can lead to the formation of common mycorrhizal networks (CMNs) that allow sharing of carbon and nutrients among the connected host plants. For example, the rare isotope carbon-14 was added to a particular tree and later detected in nearby plants and seedlings. One study observed a bidirectional carbon transfer between ''
Betula papyrifera ''Betula papyrifera'' (paper birch, also known as (American) white birch and canoe birch) is a short-lived species of birch native to northern North America. Paper birch is named for the tree's thin white bark, which often peels in paper li ...
'' and '' Pseudotsuga menziesii'', primarily through the hyphae of the ectomycorrhiza. However, not all plants are compatible with all fungal networks, so not all plants can exploit the benefits of established ectomycorrhizal linkages. The shared nutrient connection through CMNs has been suggested to be involved with other ecological processes such as seedling establishment, forest
succession Succession is the act or process of following in order or sequence. Governance and politics *Order of succession, in politics, the ascension to power by one ruler, official, or monarch after the death, resignation, or removal from office of ...
and other plant-plant interactions. Some arbuscular mycorrhizas have been shown to carry signals warning plants on the network of attack by insects or disease.


Fruiting bodies

Unlike most arbuscular mycorrhizal fungi, EcM fungi reproduce sexually and produce visible fruiting bodies in a wide variety of forms. The fruiting body, or sporocarp, can be thought of as an extension of the extraradical hyphae. Its
cell walls A cell wall is a structural layer surrounding some types of cells, just outside the cell membrane. It can be tough, flexible, and sometimes rigid. It provides the cell with both structural support and protection, and also acts as a filtering mech ...
and spores are typically composed of complex carbohydrates, and often incorporate a great deal of
nitrogen Nitrogen is the chemical element with the symbol N and atomic number 7. Nitrogen is a nonmetal and the lightest member of group 15 of the periodic table, often called the pnictogens. It is a common element in the universe, estimated at se ...
. Many EcM fungi can only form fruiting bodies and complete their life cycles by participating in an EcM relationship. The fruit bodies of many species take on classic, well-recognized shapes such as epigeous mushrooms and hypogeous truffles. Most of these produce microscopic propagules of about 10 μm that can disperse over large distances by way of various vectors, ranging from wind to mycophagous animals. It has been suggested that animals are drawn to hypogeous fruiting bodies because they are rich in nutrients such as nitrogen, phosphorus, minerals and vitamins. However, others argue that the specific nutrients are less important than the availability of food at specific times of the year. Surveys of fruiting bodies have been used to assess community composition and richness in many studies. However, this method is imperfect as fruiting bodies do not last long and can be hard to detect.


Physiology


Presymbiosis

To form an ectomycorrhizal connection, the fungal hyphae must first grow towards the plant's roots. Then they must envelope and penetrate the root cap cells and infect them, allowing the symbiotic Hartig net and associated structures to form. Both partners (plant and fungus) must follow a precise sequence of gene expression for this to be successful. There is evidence that communication between the partners in the early stage of ectomycorrhiza occurs in some cases via volatile organic compounds produced only during the interaction phase, and that genes involved in
secretory 440px Secretion is the movement of material from one point to another, such as a secreted chemical substance from a cell or gland. In contrast, excretion is the removal of certain substances or waste products from a cell or organism. The classica ...
, apical growth, and infection processes show changes in expression early in the pre-contact phase. Thus, a complex set of molecular changes appears to take place even before the fungus and host plant make contact. The plant hosts release metabolites into the rhizosphere that can trigger basidiospore germination, growth of hyphae towards the root, and the early steps of EcM formation. These include
flavonoids Flavonoids (or bioflavonoids; from the Latin word ''flavus'', meaning yellow, their color in nature) are a class of polyphenolic secondary metabolites found in plants, and thus commonly consumed in the diets of humans. Chemically, flavonoids ...
, diterpenes,
cytokinins Cytokinins (CK) are a class of plant hormones that promote cell division, or cytokinesis, in plant roots and shoots. They are involved primarily in cell growth and differentiation, but also affect apical dominance, axillary bud growth, and lea ...
, hormones and other nutrients. Some host-released metabolites have been shown to stimulate fungal growth in '' Pisolithus'', modify the branching angle of hyphae, and cause other changes in the fungus. Some fungal genes appear to be expressed before plant contact, suggesting that signals in the soil may induce important fungal genes at a distance from the plant.


Symbiosis

Once the fungal hyphae make contact with root cap cells, they must continue to grow inwards to the epidermal cells and multiply to form the layers that will eventually produce the mantle. Production of the fungal mantle involves the upregulation of genes responsible for
translation Translation is the communication of the meaning of a source-language text by means of an equivalent target-language text. The English language draws a terminological distinction (which does not exist in every language) between ''transla ...
and cell growth, as well as those responsible for membrane
synthesis Synthesis or synthesize may refer to: Science Chemistry and biochemistry * Chemical synthesis, the execution of chemical reactions to form a more complex molecule from chemical precursors **Organic synthesis, the chemical synthesis of organ ...
and function, such as hydrophobins. Some polypeptides are only found when the fungus and plant have achieved symbiosis; these symbiosis-related (SR) proteins are termed ectomycorrhizins. Major changes in polypeptide and mRNA synthesis happen rapidly after colonization by the fungus, including the production of ectomycorrhizins. Changes include the upregulation of genes that may help new membranes to form at the symbiotic interface. The effect of the mantle on root proliferation, root hair development and dichotomous branching can be partially mimicked by fungal exudates, providing a path to identifying the molecules responsible for communication. The Hartig net initially forms from the fully differentiated inner layer of the mantle, and penetration occurs in a broad front oriented at right angles to the root axis, digesting through the apoplastic space. Some plant cells respond by producing stress- and defense-related proteins including chitinases and peroxidases that could inhibit Hartig net formation. However, extensive root colonization still occurs in these plants and these hallmarks of resistance seem to diminish by about day 21 after colonization, implying that EcM fungi can suppress the defense response. As the fungus and plant become closely connected, they begin to share nutrients. This process is also controlled by symbiosis-related genes. For example, monosaccharide uptake in '' Amanita muscaria'' requires a transporter that is only expressed when it is in a mycorrhizal association. When the transporter is expressed, leading to increased import of sugar by the fungus, the plant host responds by increasing sugar availability. The transport of ammonium and amino acids from fungus to plant is also regulated.


Nutrient uptake and exchange

Nitrogen is essential in plant biochemistry, being required for chlorophyll and all
protein Proteins are large biomolecules and macromolecules that comprise one or more long chains of amino acid residues. Proteins perform a vast array of functions within organisms, including catalysing metabolic reactions, DNA replication, res ...
s. In most terrestrial ecosystems nitrogen is in short supply and is sequestered in organic matter that is hard to break down. Fungal symbionts thus offer two advantages to plants: the greater range of their hyphae when compared with roots, and a greater ability to extract nitrogen from the layer of soil in which organic matter lies. Net transfer of nutrients to plants requires the nutrient to cross three interfaces: 1) the soil-fungus interface, 2) the fungus- apoplast interface, and 3) the apoplast-root cell interface. It has been estimated that ectomycorrhizal fungi receive approximately 15% of the host plant's food product and in return provide up to 86% of a host's nitrogen needs. Some studies have shown that if there is too much nitrogen available due to human use of fertilizer, plants can shift their resources away from the fungal network. This can pose problems for the fungus, which may be unable to produce fruiting bodies, and over the long term can cause changes in the types of fungal species present in the soil. In one study species richness declined dramatically with increasing nitrogen inputs, with over 30 species represented at low nitrogen sites and only 9 at high nitrogen sites. As the hyphae of the Hartig net region become more densely packed, they press against the cell walls of the plant's root cells. Often the fungal and plant cell walls become almost indistinguishable where they meet, making it easy for nutrients to be shared. In many ectomycorrhizas the Hartig net hyphae lack internal divisions, creating a multinuclear
transfer cell Transfer cells are specialized parenchyma cells that have an increased surface area, due to infoldings of the plasma membrane The cell membrane (also known as the plasma membrane (PM) or cytoplasmic membrane, and historically referred to as th ...
-like structure that facilitates interhyphal transport. The hyphae have a high concentration of organelles responsible for energy and protein production ( mitochondria and rough endoplasmic reticulum) at their tips. There are signs that transporters in both fungal and plant plasma membranes are active, suggesting a bidirectional nutrient exchange. The structure of the EcM network depends on the availability of nutrients. When nutrient availability is low, the investment in the underground network is high relative to above-ground growth.
Phosphorus Phosphorus is a chemical element with the symbol P and atomic number 15. Elemental phosphorus exists in two major forms, white phosphorus and red phosphorus, but because it is highly reactive, phosphorus is never found as a free element on Ea ...
is another typically limiting nutrient in many terrestrial ecosystems. Evidence suggests that phosphorus is transferred largely as orthophosphate. Some mat-forming ectomycorrhizas contain ribonucleases capable of rapidly degrading DNA to obtain phosphorus from nuclei.


Non-nutritional benefits

Extraradical hyphae, particularly rhizomorphs, can also offer invaluable transport of water. Often these develop into specialized runners that extend far from the host roots, increasing the functional water access area. The hyphal sheath enveloping the root tips also acts as a physical barrier shielding plant tissues from pathogens and predators. There is also evidence that secondary metabolites produced by the fungi act as biochemical defense mechanisms against pathogenic fungi, nematodes and bacteria that may try to infect the mycorrhizal root. Many studies also show that EcM fungi allow plants to tolerate soils with high concentrations of heavy metals, salts, radionuclides and organic pollutants.


Ectendomycorrhiza

Although the Hartig net forms outside the root cells, penetration of plant cortical cells occasionally occurs. Many species of ectomycorrhizal fungi can function either as ectomycorrhizas or in the penetrative mode typical of arbuscular mycorrhizas, depending on the host. Because these associations represent a form of symbiosis in between arbuscular mycorrhizas and ectomycorrhizas, they are termed ectendomycorrhizas.Quoreshi, Ali M. "The use of mycorrhizal biotechnology in restoration of disturbed ecosystem." Mycorrhizae: Sustainable Agriculture and Forestry. Springer Netherlands, 2008. 303-320.


Ecology


Biogeography and environmental gradients

Ectomycorrhizal fungi are found throughout
boreal Boreal may refer to: Climatology and geography *Boreal (age), the first climatic phase of the Blytt-Sernander sequence of northern Europe, during the Holocene epoch *Boreal climate, a climate characterized by long winters and short, cool to mild ...
, temperate and tropical ecosystems, primarily among the dominant woody-plant-producing families. Many of the fungal families common in temperate forests (e.g. Russulaceae, Boletaceae, Thelephoraceae) are also widespread in the southern hemisphere and tropical dipterocarp forests: although the plant families are quite different in temperate and tropical forests, the ectomycorrhizal fungi are fairly similar. The types of EcM fungi are affected by soil types both in the field and in the lab. For most types of plants and animals, species diversity increases towards the equator. This is called the latitudinal gradient of diversity (LGD). In contrast, there is evidence that EcM fungi may be at maximum diversity in the temperate zone. If this is the case, it might be explained by one or more of the following hypotheses: 1) EcM fungi may have evolved at higher latitudes with Pinaceae hosts, and be less able to compete in tropical climates; 2) the plants EcMs use as hosts might be more diverse in temperate conditions, and the structure of the soil in temperate regions may allow for higher
niche differentiation In ecology, niche differentiation (also known as niche segregation, niche separation and niche partitioning) refers to the process by which competing species use the environment differently in a way that helps them to coexist. The competitive excl ...
and species accumulation; and 3) tropical EcM hosts are spread out more sparsely in small isolated forest islands that may reduce the population sizes and diversity of EcM fungi.


Host specificity and community responses

Most EcM hosts show low levels of specificity, and can form symbioses with many distantly related fungi.Molina, Randy, Hugues Massicotte, and James M. Trappe. "Specificity phenomena in mycorrhizal symbioses: community-ecological consequences and practical implications." Mycorrhizal functioning: an integrative plant-fungal process (1992): 357-423. This may have evolutionary benefits to the plant in two ways: 1) the plant's seedlings are more likely to be able to form mycorrhizas in a wide array of habitats; and 2) the plant can make use of different fungi that vary in their ability to access nutrients. EcM fungi exhibit various levels of specificity for their plant hosts, and the costs and benefits to their specialization are not well understood. For example, the suilloid group, a monophyletic assemblage containing the genera '' Suillus'', ''
Rhizopogon ''Rhizopogon'' is a genus of ectomycorrhizal basidiomycetes in the family Rhizopogonaceae. Species form hypogeous sporocarps commonly referred to as " false truffles". The general morphological characters of ''Rhizopogon'' sporocarps are a si ...
'', '' Gomphidius'' and others, shows an extreme degree of specificity, with almost all of its members forming ectomycorrhizas with members of the Pinaceae. However, many other fungal groups exhibit a very broad host range. Host plants that are
taxonomically In biology, taxonomy () is the scientific study of naming, defining ( circumscribing) and classifying groups of biological organisms based on shared characteristics. Organisms are grouped into taxa (singular: taxon) and these groups are given ...
related have more similar EcM fungal communities than do taxa that are more distantly related. Similarly, molecular phylogenetic studies have shown that fungi derived from a common ancestor are more likely to have hosts that are taxonomically related. The maturity of the host environment, or successional status, may also affect the variety of EcM fungal communities present. Other indirect factors can also play a role in the EcM fungal community, such as leaf fall and litter quality, which affect
calcium Calcium is a chemical element with the symbol Ca and atomic number 20. As an alkaline earth metal, calcium is a reactive metal that forms a dark oxide-nitride layer when exposed to air. Its physical and chemical properties are most similar ...
levels and soil pH.


Roles in invasion

Plants that are not native to an area often require mycorrhizal symbionts to thrive. The vast majority of arbuscular mycorrhizas are non-specific, and so plants that interact with these mycorrhizas often become invasive quickly and easily. However, ectomycorrhizal symbioses are often relatively specific. In
exotic Exotic may refer to: Mathematics and physics * Exotic R4, a differentiable 4-manifold, homeomorphic but not diffeomorphic to the Euclidean space R4 *Exotic sphere, a differentiable ''n''-manifold, homeomorphic but not diffeomorphic to the ordinar ...
forestry Forestry is the science and craft of creating, managing, planting, using, conserving and repairing forests, woodlands, and associated resources for human and environmental benefits. Forestry is practiced in plantations and natural stands. ...
, compatible EcM fungi are often introduced to the foreign landscape to ensure the success of forest plantations. This is most common in eucalypts and
pine A pine is any conifer tree or shrub in the genus ''Pinus'' () of the family (biology), family Pinaceae. ''Pinus'' is the sole genus in the subfamily Pinoideae. The World Flora Online created by the Royal Botanic Gardens, Kew and Missouri Botanic ...
s, which are obligate ectomycorrhizal trees in natural conditions. Pines were difficult to establish in the southern hemisphere for this reason,Richardson, David M., ed. Ecology and biogeography of Pinus. Cambridge University Press, 2000. and many ''
Eucalyptus ''Eucalyptus'' () is a genus of over seven hundred species of flowering trees, shrubs or mallees in the myrtle family, Myrtaceae. Along with several other genera in the tribe Eucalypteae, including '' Corymbia'', they are commonly known as ...
'' plantations required inoculation by EcM fungi from their native landscape. In both cases, once the EcM networks were introduced the trees were able to naturalize and then began to compete with native plants. Many EcM species co-invade without the help of human activity, however. The family Pinaceae often invade habitats along with specific EcM fungi from the genera '' Suillus'' and ''
Rhizopogon ''Rhizopogon'' is a genus of ectomycorrhizal basidiomycetes in the family Rhizopogonaceae. Species form hypogeous sporocarps commonly referred to as " false truffles". The general morphological characters of ''Rhizopogon'' sporocarps are a si ...
''. There are also ectomycorrhiza-forming fungi with cosmopolitan distributions which can allow non-native plant species to spread in the absence of their specific EcM fungi from the native ecosystem. Plants can compete through attacking each other's fungal networks. Dominant native plants can inhibit EcM fungi on the roots of neighboring plants, and some invasive plants can inhibit the growth of native ectomycorrhizal fungi, especially if they become established and dominant. Invasive garlic mustard, '' Alliaria petiolata'', and its allelochemical benzyl
isothiocyanate In organic chemistry, isothiocyanate is the functional group , formed by substituting the oxygen in the isocyanate group with a sulfur. Many natural isothiocyanates from plants are produced by enzymatic conversion of metabolites called glu ...
were shown to inhibit the growth of three species of EcM fungi grown on white pine seedlings. Changes in EcM communities can have drastic effects on nutrient uptake and community composition of native trees, with far-reaching ecological ramifications.


Competition and other plant symbionts

Competition among EcM fungi is a well-documented case of soil microbial interactions. In some experiments, the timing of colonization by competing EcM fungi determined which species was dominant. Many biotic and
abiotic factors In biology and ecology, abiotic components or abiotic factors are non-living chemical and physical parts of the environment that affect living organisms and the functioning of ecosystems. Abiotic factors and the phenomena associated with them unde ...
can mediate competition among EcM fungi, such as temperature, soil pH, soil moisture, host specificity, and competitor number, and these factors interact with each other in a complex way. There is also some evidence for competition between EcM fungi and arbuscular mycorrhizal fungi. This is mostly noted in species that can host both EcM and AM fungi on their roots. Some soil
bacteria Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were am ...
, known as Mycorrhiza helper bacteria (MHBs), have been shown to stimulate EcM formation, root and shoot biomass, and fungal growth. Some argue that bacteria of this kind should be considered a third component of mycorrhizas. Other bacteria inhibit ectomycorrhizal formation.


Interactions with animals

Many ectomycorrhizal fungi rely upon mammals for the dispersal of their spores, particularly fungi with hypogeous fruiting bodies. Many species of small mammals are mycophages, eating a wide range of fungi and especially the fruiting bodies. Spores are dispersed either because the fruiting body is unearthed and broken apart, or after ingestion and subsequent excretion. Some studies even suggest that passage through an animal's gut promotes spore germination, although for most fungal species this is not necessary. By spreading the fungal spores, these animals have an indirect effect on plant community structure. Other fruiting bodies are eaten by
invertebrate Invertebrates are a paraphyletic group of animals that neither possess nor develop a vertebral column (commonly known as a ''backbone'' or ''spine''), derived from the notochord. This is a grouping including all animals apart from the chorda ...
s such as mollusks and fly larvae, some of which are even tolerant to the toxic α-amanitin found in death caps. Below ground, nematodes and
springtail Springtails (Collembola) form the largest of the three lineages of modern hexapods that are no longer considered insects (the other two are the Protura and Diplura). Although the three orders are sometimes grouped together in a class called ...
s also consume fungal tissue. The ectomycorrhizal fungus ''
Laccaria bicolor ''Laccaria bicolor'' is a small tan-colored mushroom with lilac gills. It is edible but not choice, and grows in mixed birch and pine woods. It is found in the temperate zones of the globe, in late summer and autumn. ''L. bicolor'' is an e ...
'' has been found to lure and kill
springtail Springtails (Collembola) form the largest of the three lineages of modern hexapods that are no longer considered insects (the other two are the Protura and Diplura). Although the three orders are sometimes grouped together in a class called ...
s to obtain nitrogen, some of which may then be transferred to the host plant. In one study, eastern white pine inoculated with '' L. bicolor'' was able to derive up to 25% of its nitrogen from springtails. Edible fungi are important in societies throughout the world. Truffles, porcinis and chanterelles are known for their taste and culinary and financial importance.


Plant production


Agriculture

Ectomycorrhizal fungi are not prominent in agricultural and
horticultural Horticulture is the branch of agriculture that deals with the art, science, technology, and business of plant cultivation. It includes the cultivation of fruits, vegetables, nuts, seeds, herbs, sprouts, mushrooms, algae, flowers, seaweeds and no ...
systems. Most of the economically relevant
crop A crop is a plant that can be grown and harvested extensively for profit or subsistence. When the plants of the same kind are cultivated at one place on a large scale, it is called a crop. Most crops are cultivated in agriculture or hydropon ...
plants that form mycorrhizas tend to form them with arbuscular mycorrhizal fungi. Many modern agricultural practices such as tillage, heavy fertilizers and fungicides are extremely detrimental to mycorrhizas and the surrounding ecosystem. It is possible that agriculture indirectly affects nearby ectomycorrhizal species and habitats; for example, increased fertilization decreases sporocarp production.Amaranthus, Michael P. The importance and conservation of ectomycorrhizal fungal diversity in forest ecosystems: lessons from Europe and the Pacific Northwest. US Department of Agriculture, Forest Service, Pacific Northwest Research Station, 1998

/ref>


Forestry

In commercial
forestry Forestry is the science and craft of creating, managing, planting, using, conserving and repairing forests, woodlands, and associated resources for human and environmental benefits. Forestry is practiced in plantations and natural stands. ...
, the
transplanting In agriculture and gardening, transplanting or replanting is the technique of moving a plant from one location to another. Most often this takes the form of starting a plant from seed in optimal conditions, such as in a greenhouse or protecte ...
of crop trees to new locations often requires an accompanying ectomycorrhizal partner. This is especially true of trees that have a high degree of specificity for their mycobiont, or trees that are being planted far from their native habitat among novel fungal species. This has been repeatedly shown in
plantations A plantation is an agricultural estate, generally centered on a plantation house, meant for farming that specializes in cash crops, usually mainly planted with a single crop, with perhaps ancillary areas for vegetables for eating and so on. Th ...
involving obligate ectomycorrhizal trees, such as ''
Eucalyptus ''Eucalyptus'' () is a genus of over seven hundred species of flowering trees, shrubs or mallees in the myrtle family, Myrtaceae. Along with several other genera in the tribe Eucalypteae, including '' Corymbia'', they are commonly known as ...
'' and '' Pinus'' species. Mass planting of these species often requires an inoculum of native EcM fungi for the trees to prosper. Sometimes ectomycorrhizal plantation species, such as
pine A pine is any conifer tree or shrub in the genus ''Pinus'' () of the family (biology), family Pinaceae. ''Pinus'' is the sole genus in the subfamily Pinoideae. The World Flora Online created by the Royal Botanic Gardens, Kew and Missouri Botanic ...
and
eucalyptus ''Eucalyptus'' () is a genus of over seven hundred species of flowering trees, shrubs or mallees in the myrtle family, Myrtaceae. Along with several other genera in the tribe Eucalypteae, including '' Corymbia'', they are commonly known as ...
, are planted and promoted for their ability to act as a sink for atmospheric carbon. However, the ectomycorrhizal fungi of these species also tend to deplete soil carbon, making this use of plantations controversial.


Restoration

The role of ectomycorrhizas in supporting their host plants has led to the suggestion that EcM fungi could be used in restoration projects aimed at re-establishing native plant species in ecosystems disrupted by a variety of issues. Since the disappearance of mycorhizal fungi from a habitat constitutes a major soil disturbance event, their re-addition is an important part of establishing vegetation and restoring habitats.


Resilience in challenging environments


Heavy metals

Heavy metals are
toxic Toxicity is the degree to which a chemical substance or a particular mixture of substances can damage an organism. Toxicity can refer to the effect on a whole organism, such as an animal, bacterium, or plant, as well as the effect on a sub ...
for living organisms. High soil concentrations of heavy metals such as
zinc Zinc is a chemical element with the symbol Zn and atomic number 30. Zinc is a slightly brittle metal at room temperature and has a shiny-greyish appearance when oxidation is removed. It is the first element in group 12 (IIB) of the periodi ...
,
copper Copper is a chemical element with the symbol Cu (from la, cuprum) and atomic number 29. It is a soft, malleable, and ductile metal with very high thermal and electrical conductivity. A freshly exposed surface of pure copper has a pink ...
,
cadmium Cadmium is a chemical element with the Symbol (chemistry), symbol Cd and atomic number 48. This soft, silvery-white metal is chemically similar to the two other stable metals in group 12 element, group 12, zinc and mercury (element), mercury. Li ...
,
lead Lead is a chemical element with the symbol Pb (from the Latin ) and atomic number 82. It is a heavy metal that is denser than most common materials. Lead is soft and malleable, and also has a relatively low melting point. When freshly cut, ...
,
nickel Nickel is a chemical element with symbol Ni and atomic number 28. It is a silvery-white lustrous metal with a slight golden tinge. Nickel is a hard and ductile transition metal. Pure nickel is chemically reactive but large pieces are slow t ...
, and chromium affect basic metabolic processes and can lead to cell damage and death. Some ectomycorrhizal fungi are tolerant to heavy metals, with many species having the ability to colonize contaminated soils. There are also cases of populations locally adapted to tolerate harsh chemical environments Fungi exhibit
detoxification Detoxification or detoxication (detox for short) is the physiological or medicinal removal of toxic substances from a living organism, including the human body, which is mainly carried out by the liver. Additionally, it can refer to the period of ...
mechanisms to reduce heavy metal concentrations in their cells. These mechanisms include reducing heavy metal uptake, sequestering and storing heavy metals within the cell, and excretion. Heavy metal uptake can be reduced by
sorption Sorption is a physical and chemical process by which one substance becomes attached to another. Specific cases of sorption are treated in the following articles: ; Absorption: "the incorporation of a substance in one state into another of a di ...
and metabolic inactivation at the cell wall and apoplast level. Ectomycorrhizal fungi also have the ability to bind considerable amounts of heavy metals. Once inside the cell, heavy metals can be immobilized in organo-metal complexes, made soluble, transformed into
metallothionein Metallothionein (MT) is a family of cysteine-rich, low molecular weight (MW ranging from 500 to 14000 Da) proteins. They are localized to the membrane of the Golgi apparatus. MTs have the capacity to bind both physiological (such as zinc, cop ...
s, involved in metal sequestration and/or stored in vacuoles in chemically inactive forms. Antioxidant detoxification systems may also be in place, reducing the production of free radicals and protecting the fungal cell. Fungi can export metals from the cytoplasm to the apoplast, a mechanism that also occurs in plants. Ectomycorrhizal fungi can also concentrate heavy metals in their fruiting bodies. Genetic differences between populations growing in toxic versus non-toxic habitats have rarely been reported, indicating that metal tolerance is widespread. No metal-adapted
endemic Endemism is the state of a species being found in a single defined geographic location, such as an island, state, nation, country or other defined zone; organisms that are indigenous to a place are not endemic to it if they are also found else ...
taxa have been documented so far. There is, however, evidence for community shifts associated with heavy metals, with lower diversity associated with contaminated sites. On the other hand, soils naturally rich in heavy metals, such as serpentine soils, do not seem to affect the diversity of ectomycorrhizal fungal communities. Although widespread metal tolerance seems to be the norm for ectomycorrhizal fungi, it has been suggested that a few fungi such as ''Pisolithus tinctorius'', ''P. albus'' and species in the genus ''Suillus'' can become adapted to high levels of Al, Zn, Cd and Cu. ''Suillus luteus'' and ''S. bovinus'' are good examples, with known ecotypes adapted to Zn, Cd and Cu.


Pollution and phytoremediation

EcM fungi have been found to have beneficial effects in several types of polluted environments, including: ''• High salt:'' A number of studies have shown that certain EcM fungi can help their hosts survive high soil salinity conditions. ''• Radionuclides:'' Many species of ectomycorrhizal fungi, including the Cortinariaceae, can hyperaccumulate radionuclides ''• Organic pollutants:'' Some EcM species are capable of decomposing persistent organic pollutants (POPs) such as organochlorides and
polychlorinated biphenyls Polychlorinated biphenyls (PCBs) are highly carcinogenic chemical compounds, formerly used in industrial and consumer products, whose production was banned in the United States by the Toxic Substances Control Act in 1979 and internationally by ...
(PCBs). Chemicals that can be detoxified by EcM fungi, either alone or in association with their host plant, include 2,4-dichlorophenol and tetrachloroethylene.


Climate change

Ectomycorrhizal communities can be affected by increased CO2 and the consequent effects of
climate change In common usage, climate change describes global warming—the ongoing increase in global average temperature—and its effects on Earth's climate system. Climate change in a broader sense also includes previous long-term changes to ...
. In some studies, elevated CO2 levels increased fungal mycelium growth and increased EcM root colonization. Other EcM associations showed little response to elevated CO2. Increased temperatures also give a range of responses, some negative, and others positive. The EcM response to
drought A drought is defined as drier than normal conditions.Douville, H., K. Raghavan, J. Renwick, R.P. Allan, P.A. Arias, M. Barlow, R. Cerezo-Mota, A. Cherchi, T.Y. Gan, J. Gergis, D.  Jiang, A.  Khan, W.  Pokam Mba, D.  Rosenfeld, J. Tierney, an ...
is complex since many species provide protection against root desiccation and improve the ability of the roots to take up water. Thus, EcMs protect their host plants during times of drought, although they may themselves be affected over time.


Conservation

As the importance of below-ground organisms to forest productivity, recovery and stability becomes clear,
conservation Conservation is the preservation or efficient use of resources, or the conservation of various quantities under physical laws. Conservation may also refer to: Environment and natural resources * Nature conservation, the protection and manageme ...
of ectomycorrhizas is gaining attention. Many species of EcM fungi in
Europe Europe is a large peninsula conventionally considered a continent in its own right because of its great physical size and the weight of its history and traditions. Europe is also considered a Continent#Subcontinents, subcontinent of Eurasia ...
have declined, due to factors including reduced tree vitality, conversion of forests to other uses,
pollution Pollution is the introduction of contaminants into the natural environment that cause adverse change. Pollution can take the form of any substance (solid, liquid, or gas) or energy (such as radioactivity, heat, sound, or light). Pollutants, th ...
and acidification of forest soils. It has been argued that conservation of ectomycorrhizas requires protection of species across their entire host range and habitat, to ensure that all types of EcM communities are preserved. The Northwest Forest Plan, which governs
land use Land use involves the management and modification of natural environment or wilderness into built environment such as settlements and semi-natural habitats such as arable fields, pastures, and managed woods. Land use by humans has a long ...
on federal lands in the
Pacific Northwest The Pacific Northwest (sometimes Cascadia, or simply abbreviated as PNW) is a geographic region in western North America bounded by its coastal waters of the Pacific Ocean to the west and, loosely, by the Rocky Mountains to the east. Thou ...
region of the
United States The United States of America (U.S.A. or USA), commonly known as the United States (U.S. or US) or America, is a country Continental United States, primarily located in North America. It consists of 50 U.S. state, states, a Washington, D.C., ...
, includes provisions for studying endangered fungi and developing strategies to manage and protect them. The European Council for the Conservation of Fungi was founded in 1985 to promote research on and attention to endangered fungi. In 2018, the Council collaborated with the
Kew Royal Botanic Gardens Royal Botanic Gardens, Kew is a non-departmental public body in the United Kingdom sponsored by the Department for Environment, Food and Rural Affairs. An internationally important botanical research and education institution, it employs 1,100 ...
to produce the State of the World's Fungi Report, 2018. Conservation strategies include the maintenance of: 1) refuge plants and reservoir hosts to preserve the EcM fungal community after harvesting; 2) mature trees to provide seedlings with a diverse array of EcM fungi; and 3) old-growth stands that have diverse macro- and microhabitats and support varied EcM fungal communities.Wiensczyk, Alan M., et al. "Ectomycorrhizae and forestry in British Columbia: A summary of current research and conservation strategies." ''Journal of Ecosystems and Management'' 2.1 (2002)
PDF
Preservation of natural forest floor constituents and retention of woody debris and substrates may also be important. In one study concerning Douglas fir seedlings, removal of forest floor debris and soil compaction decreased EcM fungal diversity and abundance by 60%.Amaranthus, Michael P., et al. Soil compaction and organic matter affect conifer seedling nonmycorrhizal and ectomycorrhizal root tip abundance and diversity. Forest Service research paper. No. PB--97-104301/XAB; FSRP-PNW--494. Forest Service, Portland, OR (United States). Pacific Northwest Research Station, 1996

/ref> Removal of pinegrass similarly reduced the diversity and richness of EcM fungi. Some strategies, such as controlled burn, prescribed burns, have different effects on different types of EcM communities, ranging from negative to neutral or positive. Large '' ex situ'' culture collections of fungi, including ectomycorrhizal fungi, are being maintained throughout the world as insurance against genetic loss. However, these collections are incomplete.


See also

* Mycorrhiza * Arbuscular mycorrhiza * Ericoid mycorrhiza * Orchid mycorrhiza *
Mycorrhizae and changing climate Mycorrhizae and climate change refers to the effects of climate change on mycorrhizae, a fungus which forms an Endosymbiont, endosymbiotic relationship between with a Vascular plant, vascular host plant by colonizing its roots, and the effects brou ...


References


External links


Mycorrhizal Associations: The Web Resource
Comprehensive illustrations and lists of mycorrhizal and nonmycorrhizal plants and fungi

Biosafety research into genetically modified barley
International Mycorrhiza Society
International Mycorrhiza Society
MycorWiki
a portal concerned with the biology and ecology of ectomycorrhizal fungi and other forest fungi. {{Use dmy dates, date=April 2017 Fungal morphology and anatomy Fungus ecology Plant roots Soil biology Symbiosis