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An RNA virus is a
virus A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bacteria and archaea. Viruses are ...
characterized by a ribonucleic acid (
RNA Ribonucleic acid (RNA) is a polymeric molecule that is essential for most biological functions, either by performing the function itself (non-coding RNA) or by forming a template for the production of proteins (messenger RNA). RNA and deoxyrib ...
) based
genome A genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as ...
. The genome can be
single-stranded When referring to DNA transcription, the coding strand (or informational strand) is the DNA strand whose base sequence is identical to the base sequence of the RNA transcript produced (although with thymine replaced by uracil). It is this stra ...
RNA (
ssRNA Ribonucleic acid (RNA) is a polymeric molecule that is essential for most biological functions, either by performing the function itself (non-coding RNA) or by forming a template for the production of proteins (messenger RNA). RNA and deoxyrib ...
) or double-stranded (
dsRNA Ribonucleic acid (RNA) is a polymeric molecule that is essential for most biological functions, either by performing the function itself ( non-coding RNA) or by forming a template for the production of proteins ( messenger RNA). RNA and deoxy ...
). Notable human diseases caused by RNA viruses include
influenza Influenza, commonly known as the flu, is an infectious disease caused by influenza viruses. Symptoms range from mild to severe and often include fever, runny nose, sore throat, muscle pain, headache, coughing, and fatigue. These sympto ...
,
SARS Severe acute respiratory syndrome (SARS) is a viral respiratory disease of zoonotic origin caused by the virus SARS-CoV-1, the first identified strain of the SARS-related coronavirus. The first known cases occurred in November 2002, and the ...
,
MERS Middle East respiratory syndrome (MERS) is a viral respiratory infection caused by '' Middle East respiratory syndrome–related coronavirus'' (MERS-CoV). Symptoms may range from none, to mild, to severe depending on age and risk level. Typi ...
,
COVID-19 Coronavirus disease 2019 (COVID-19) is a contagious disease caused by the coronavirus SARS-CoV-2. In January 2020, the disease spread worldwide, resulting in the COVID-19 pandemic. The symptoms of COVID‑19 can vary but often include fever ...
,
Dengue virus Dengue virus (DENV) is the cause of dengue fever. It is a mosquito-borne, single positive-stranded RNA virus of the family ''Flaviviridae''; genus '' Flavivirus''. Four serotypes of the virus have been found, and a reported fifth has yet to be ...
,
hepatitis C Hepatitis C is an infectious disease caused by the hepatitis C virus (HCV) that primarily affects the liver; it is a type of viral hepatitis. During the initial infection period, people often have mild or no symptoms. Early symptoms can include ...
,
hepatitis E Hepatitis E is inflammation of the liver caused by infection with the hepatitis E virus (HEV); it is a type of viral hepatitis. Hepatitis E has mainly a fecal-oral transmission route that is similar to hepatitis A, although the viruses are u ...
,
West Nile fever West Nile fever is an infection by the West Nile virus, which is typically spread by mosquitoes. In about 80% of infections people have few or no symptoms. About 20% of people develop a fever, headache, vomiting, or a rash. In less than 1% of ...
,
Ebola virus disease Ebola, also known as Ebola virus disease (EVD) and Ebola hemorrhagic fever (EHF), is a viral hemorrhagic fever in humans and other primates, caused by ebolaviruses. Symptoms typically start anywhere between two days and three weeks after infe ...
,
rabies Rabies is a viral disease that causes encephalitis in humans and other mammals. It was historically referred to as hydrophobia ("fear of water") because its victims panic when offered liquids to drink. Early symptoms can include fever and abn ...
,
polio Poliomyelitis ( ), commonly shortened to polio, is an infectious disease caused by the poliovirus. Approximately 75% of cases are asymptomatic; mild symptoms which can occur include sore throat and fever; in a proportion of cases more severe ...
,
mumps MUMPS ("Massachusetts General Hospital Utility Multi-Programming System"), or M, is an imperative, high-level programming language with an integrated transaction processing key–value database. It was originally developed at Massachusetts Gen ...
, and
measles Measles (probably from Middle Dutch or Middle High German ''masel(e)'', meaning "blemish, blood blister") is a highly contagious, Vaccine-preventable diseases, vaccine-preventable infectious disease caused by Measles morbillivirus, measles v ...
. All known RNA viruses, that is viruses that use a homologous RNA-dependent polymerase for replication, are categorized by the
International Committee on Taxonomy of Viruses The International Committee on Taxonomy of Viruses (ICTV) authorizes and organizes the taxonomic classification of and the nomenclature for viruses. The ICTV develops a universal taxonomic scheme for viruses, and thus has the means to appropri ...
(ICTV) into the realm ''
Riboviria ''Riboviria'' is a Realm (virology), realm of viruses that includes all viruses that use a homologous RNA-dependent polymerase for replication. It includes RNA viruses that Genetic code, encode an RNA-dependent RNA polymerase, as well as Pararnavi ...
''. This includes RNA viruses belonging to ''Group III'', ''Group IV'' or ''Group V'' of the
Baltimore classification Baltimore classification is a system used to classify viruses based on their manner of messenger RNA (mRNA) synthesis. By organizing viruses based on their manner of mRNA production, it is possible to study viruses that behave similarly as a disti ...
system as well as ''Group VI. Group VI'' viruses are
retrovirus A retrovirus is a type of virus that inserts a DNA copy of its RNA genome into the DNA of a host cell that it invades, thus changing the genome of that cell. After invading a host cell's cytoplasm, the virus uses its own reverse transcriptase e ...
es, viruses with RNA genetic material that use
DNA Deoxyribonucleic acid (; DNA) is a polymer composed of two polynucleotide chains that coil around each other to form a double helix. The polymer carries genetic instructions for the development, functioning, growth and reproduction of al ...
intermediates in their life cycle including
HIV-1 The subtypes of HIV include two main subtypes, known as HIV type 1 (HIV-1) and HIV type 2 (HIV-2). These subtypes have distinct genetic differences and are associated with different epidemiological patterns and clinical characteristics. HIV-1 e ...
and
HIV-2 The subtypes of HIV include two main subtypes, known as HIV type 1 (HIV-1) and HIV type 2 (HIV-2). These subtypes have distinct genetic differences and are associated with different epidemiological patterns and clinical characteristics. HIV-1 ex ...
which cause
AIDS The HIV, human immunodeficiency virus (HIV) is a retrovirus that attacks the immune system. Without treatment, it can lead to a spectrum of conditions including acquired immunodeficiency syndrome (AIDS). It is a Preventive healthcare, pr ...
. The majority of such RNA viruses fall into the kingdom ''
Orthornavirae ''Orthornavirae'' is a kingdom of viruses that have genomes made of ribonucleic acid (RNA), including genes which encode an RNA-dependent RNA polymerase (RdRp). The RdRp is used to transcribe the viral RNA genome into messenger RNA (mRNA) and t ...
'' and the rest have a positioning not yet defined.TaxoPro
2019.006G
/ref> The realm does not contain all RNA viruses: ''
Deltavirus Hepatitis D is a type of viral hepatitis caused by the hepatitis delta virus (HDV). HDV is one of five known hepatitis viruses: A, B, C, D, and E. HDV is considered to be a satellite (a type of subviral agent) because it can propagate only in ...
'', ''
Avsunviroidae The ''Avsunviroidae'' are a family of viroids. There are five species in three genera ('' Avsunviroid'', '' Elaviroid'' and '' Pelamoviroid''). They consist of RNA genomes between 246 and 375 nucleotides in length. They are single-stranded cov ...
'', and ''
Pospiviroidae The Pospiviroidae are a ''incertae sedis'' family of ssRNA viroids with 5 genera and 39 species, including the first viroid to be discovered, PSTVd, which is part of genus Pospiviroid. Their secondary structure is key to their biological act ...
'' are taxa of RNA viruses that were mistakenly included in 2019, but corrected in 2020.


Characteristics


Single-stranded RNA viruses and RNA Sense

RNA viruses can be further classified according to the sense or polarity of their RNA into
negative-sense In molecular biology and genetics, the sense of a nucleic acid molecule, particularly of a strand of DNA or RNA, refers to the nature of the roles of the strand and its complement in specifying a sequence of amino acids. Depending on the context, ...
and
positive-sense In molecular biology and genetics, the sense of a nucleic acid molecule, particularly of a strand of DNA or RNA, refers to the nature of the roles of the strand and its complement in specifying a sequence of amino acids. Depending on the context, ...
, or ambisense RNA viruses. Positive-sense viral RNA is similar to
mRNA In molecular biology, messenger ribonucleic acid (mRNA) is a single-stranded molecule of RNA that corresponds to the genetic sequence of a gene, and is read by a ribosome in the process of Protein biosynthesis, synthesizing a protein. mRNA is ...
and thus can be immediately
translated Translation is the communication of the meaning of a source-language text by means of an equivalent target-language text. The English language draws a terminological distinction (which does not exist in every language) between ''transla ...
by the host cell. Negative-sense viral RNA is complementary to mRNA and thus must be converted to positive-sense RNA by an
RNA-dependent RNA polymerase RNA-dependent RNA polymerase (RdRp) or RNA replicase is an enzyme that catalyzes the self-replication, replication of RNA from an RNA template. Specifically, it catalyzes synthesis of the RNA strand Complementarity (molecular biology), compleme ...
before translation. Purified RNA of a positive-sense virus can directly cause infection though it may be less infectious than the whole virus particle. In contrast, purified RNA of a negative-sense virus is not infectious by itself as it needs to be transcribed into positive-sense RNA; each
virion A virion (plural, ''viria'' or ''virions'') is an inert virus particle capable of invading a Cell (biology), cell. Upon entering the cell, the virion disassembles and the genetic material from the virus takes control of the cell infrastructure, t ...
can be transcribed to several positive-sense RNAs.
Ambisense In molecular biology and genetics, the sense of a nucleic acid molecule, particularly of a strand of DNA or RNA, refers to the nature of the roles of the strand and its complement in specifying a sequence of amino acids. Depending on the context, ...
RNA viruses resemble negative-sense RNA viruses, except they translate genes from their negative and positive strands.


Double-stranded RNA viruses

The double-stranded (ds)RNA viruses represent a diverse group of viruses that vary widely in host range (humans, animals, plants,
fungi A fungus (: fungi , , , or ; or funguses) is any member of the group of eukaryotic organisms that includes microorganisms such as yeasts and mold (fungus), molds, as well as the more familiar mushrooms. These organisms are classified as one ...
, and
bacteria Bacteria (; : bacterium) are ubiquitous, mostly free-living organisms often consisting of one Cell (biology), biological cell. They constitute a large domain (biology), domain of Prokaryote, prokaryotic microorganisms. Typically a few micr ...
),
genome A genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as ...
segment number (one to twelve), and
virion A virion (plural, ''viria'' or ''virions'') is an inert virus particle capable of invading a Cell (biology), cell. Upon entering the cell, the virion disassembles and the genetic material from the virus takes control of the cell infrastructure, t ...
organization (
Triangulation number A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or ma ...
,
capsid A capsid is the protein shell of a virus, enclosing its genetic material. It consists of several oligomeric (repeating) structural subunits made of protein called protomers. The observable 3-dimensional morphological subunits, which may or m ...
layers, spikes, turrets, etc.). Members of this group include the
rotavirus Rotaviruses are the most common cause of diarrhea, diarrhoeal disease among infants and young children. Nearly every child in the world is infected with a rotavirus at least once by the age of five. Immunity (medical), Immunity develops with ...
es, which are the most common cause of
gastroenteritis Gastroenteritis, also known as infectious diarrhea, is an inflammation of the Human gastrointestinal tract, gastrointestinal tract including the stomach and intestine. Symptoms may include diarrhea, vomiting, and abdominal pain. Fever, lack of ...
in young children, and picobirnaviruses, which are the most common virus in fecal samples of both humans and animals with or without signs of diarrhea.
Bluetongue virus Bluetongue virus (BTV) is a dsRNA virus of the genus '' Orbivirus''. The virus causes Bluetongue disease.ICTV''Bluetongue virus'' EC 51, Berlin, Germany, July 2019; Email ratification March 2020 (MSL #35) BTV is relatively fragile and its infe ...
is an economically important pathogen that infects cattle and sheep. In recent years, progress has been made in determining atomic and subnanometer resolution structures of a number of key viral proteins and virion capsids of several dsRNA viruses, highlighting the significant parallels in the structure and replicative processes of many of these viruses.


Mutation rates

RNA viruses generally have very high
mutation In biology, a mutation is an alteration in the nucleic acid sequence of the genome of an organism, virus, or extrachromosomal DNA. Viral genomes contain either DNA or RNA. Mutations result from errors during DNA or viral replication, ...
rates compared to
DNA virus A DNA virus is a virus that has a genome made of deoxyribonucleic acid (DNA) that is replicated by a DNA polymerase. They can be divided between those that have two strands of DNA in their genome, called double-stranded DNA (dsDNA) viruses, and t ...
es, because viral
RNA polymerases In molecular biology, RNA polymerase (abbreviated RNAP or RNApol), or more specifically DNA-directed/dependent RNA polymerase (DdRP), is an enzyme that catalyzes the chemical reactions that synthesize RNA from a DNA template. Using the en ...
lack the
proofreading Proofreading is a phase in the process of publishing where galley proofs are compared against the original manuscripts or graphic artworks, to identify transcription errors in the typesetting process. In the past, proofreaders would place corr ...
ability of
DNA polymerase A DNA polymerase is a member of a family of enzymes that catalyze the synthesis of DNA molecules from nucleoside triphosphates, the molecular precursors of DNA. These enzymes are essential for DNA replication and usually work in groups to create t ...
s. The
genetic diversity Genetic diversity is the total number of genetic characteristics in the genetic makeup of a species. It ranges widely, from the number of species to differences within species, and can be correlated to the span of survival for a species. It is d ...
of RNA viruses is one reason why it is difficult to make effective
vaccines A vaccine is a biological preparation that provides active acquired immunity to a particular infectious or malignant disease. The safety and effectiveness of vaccines has been widely studied and verified. A vaccine typically contains an ag ...
against them. Retroviruses also have a high mutation rate even though their DNA intermediate integrates into the host genome (and is thus subject to host DNA proofreading once integrated), because errors during reverse transcription are embedded into both strands of DNA before integration. Some genes of RNA virus are important to the viral replication cycles and mutations are not tolerated. For example, the region of the
hepatitis C virus The hepatitis C virus (HCV) is a small (55–65 nm in size), enveloped, positive-sense single-stranded RNA virus of the family ''Flaviviridae''. The hepatitis C virus is the cause of hepatitis C and some cancers such as liver cancer ( hepatoc ...
genome that encodes the core protein is
highly conserved In evolutionary biology, conserved sequences are identical or similar sequences in nucleic acids (DNA and RNA) or proteins across species ( orthologous sequences), or within a genome ( paralogous sequences), or between donor and receptor taxa ( ...
, because it contains an RNA structure involved in an
internal ribosome entry site An internal ribosome entry site, abbreviated IRES, is an RNA element that allows for translation initiation in a cap-independent manner, as part of the greater process of protein synthesis. Initiation of eukaryotic translation nearly always occur ...
.


Sequence complexity

On average, dsRNA viruses show a lower sequence redundancy relative to ssRNA viruses. Contrarily, dsDNA viruses contain the most redundant genome sequences while ssDNA viruses have the least. The sequence complexity of viruses has been shown to be a key characteristic for accurate reference-free viral classification.


Replication

There are three distinct groups of RNA viruses depending on their genome and mode of replication: * Double-stranded RNA viruses (Group III) contain from one to a dozen different RNA molecules, each coding for one or more viral proteins. * Positive-sense ssRNA viruses (Group IV) have their genome directly utilized as mRNA, with host
ribosomes Ribosomes () are macromolecular machines, found within all cells, that perform biological protein synthesis (messenger RNA translation). Ribosomes link amino acids together in the order specified by the codons of messenger RNA molecules to fo ...
translating Translation is the communication of the meaning of a source-language text by means of an equivalent target-language text. The English language draws a terminological distinction (which does not exist in every language) between ''transla ...
it into a single protein that is modified by host and viral proteins to form the various proteins needed for replication. One of these includes RNA-dependent RNA polymerase (RNA replicase), which copies the viral RNA to form a double-stranded replicative form. In turn, this dsRNA directs the formation of new viral RNA. * Negative-sense ssRNA viruses (Group V) must have their genome copied by an RNA replicase to form positive-sense RNA. This means that the virus must bring along with it the enzyme RNA replicase. The positive-sense RNA molecule then acts as viral mRNA, which is translated into proteins by the host ribosomes.
Retrovirus A retrovirus is a type of virus that inserts a DNA copy of its RNA genome into the DNA of a host cell that it invades, thus changing the genome of that cell. After invading a host cell's cytoplasm, the virus uses its own reverse transcriptase e ...
es (Group VI) have a single-stranded RNA genome but, in general, are not considered RNA viruses because they use DNA intermediates to replicate.
Reverse transcriptase A reverse transcriptase (RT) is an enzyme used to convert RNA genome to DNA, a process termed reverse transcription. Reverse transcriptases are used by viruses such as HIV and hepatitis B to replicate their genomes, by retrotransposon mobi ...
, a viral enzyme that comes from the virus itself after it is uncoated, converts the viral RNA into a complementary strand of DNA, which is copied to produce a double-stranded molecule of viral DNA. After this DNA is integrated into the host genome using the viral enzyme
integrase Retroviral integrase (IN) is an enzyme An enzyme () is a protein that acts as a biological catalyst by accelerating chemical reactions. The molecules upon which enzymes may act are called substrate (chemistry), substrates, and the enzyme ...
, expression of the encoded genes may lead to the formation of new virions.


Recombination

Numerous RNA viruses are capable of
genetic recombination Genetic recombination (also known as genetic reshuffling) is the exchange of genetic material between different organisms which leads to production of offspring with combinations of traits that differ from those found in either parent. In eukaryot ...
when at least two viral
genome A genome is all the genetic information of an organism. It consists of nucleotide sequences of DNA (or RNA in RNA viruses). The nuclear genome includes protein-coding genes and non-coding genes, other functional regions of the genome such as ...
s are present in the same host cell. Very rarely viral RNA can recombine with host RNA. RNA recombination appears to be a major driving force in determining genome architecture and the course of viral evolution among ''
Picornaviridae Picornaviruses are a group of related nonenveloped RNA viruses which infect vertebrates including fish, mammals, and birds. They are viruses that represent a large family of small, positive-sense, single-stranded RNA viruses with a 30 nm ...
'' ( (+)ssRNA), e.g.
poliovirus Poliovirus, the causative agent of polio (also known as poliomyelitis), is a serotype of the species '' Enterovirus C'', in the family of '' Picornaviridae''. There are three poliovirus serotypes, numbered 1, 2, and 3. Poliovirus is composed ...
. In the ''
Retroviridae A retrovirus is a type of virus that inserts a DNA copy of its RNA genome into the DNA of a host cell that it invades, thus changing the genome of that cell. After invading a host cell's cytoplasm, the virus uses its own reverse transcriptase ...
'' ((+)ssRNA), e.g.
HIV The human immunodeficiency viruses (HIV) are two species of '' Lentivirus'' (a subgroup of retrovirus) that infect humans. Over time, they cause acquired immunodeficiency syndrome (AIDS), a condition in which progressive failure of the im ...
, damage in the RNA genome appears to be avoided during
reverse transcription A reverse transcriptase (RT) is an enzyme used to convert RNA genome to DNA, a process termed reverse transcription. Reverse transcriptases are used by viruses such as HIV and hepatitis B virus, hepatitis B to replicate their genomes, by retrot ...
by strand switching, a form of recombination. Recombination also occurs in the ''
Reoviridae ''Reovirales'' is an order of double-stranded RNA viruses. Member viruses, called reoviruses, have a wide host range, including vertebrates, invertebrates, plants, protists and fungi. They lack lipid envelopes and package their segmented geno ...
'' (dsRNA), e.g. reovirus; ''
Orthomyxoviridae ''Orthomyxoviridae'' () is a family of negative-sense single-stranded RNA virus, negative-sense RNA viruses. It includes nine genus, genera: ''Influenza A virus, Alphainfluenzavirus'', ''Influenza B virus, Betainfluenzavirus'', ''Influenza C vir ...
'' ((-)ssRNA), e.g.
influenza virus ''Orthomyxoviridae'' () is a family of negative-sense RNA viruses. It includes nine genera: '' Alphainfluenzavirus'', '' Betainfluenzavirus'', '' Gammainfluenzavirus'', '' Deltainfluenzavirus'', '' Isavirus'', '' Mykissvirus'', '' Quaranjavir ...
; and ''
Coronaviridae ''Coronaviridae'' is a family (biology), family of Viral envelope, enveloped, positive-strand RNA viruses which infect fish, amphibians, birds, and mammals. The group includes the subfamilies ''Letovirinae,'' ''Orthocoronavirinae'', and ''Pitovir ...
'' ((+)ssRNA), e.g.
SARS Severe acute respiratory syndrome (SARS) is a viral respiratory disease of zoonotic origin caused by the virus SARS-CoV-1, the first identified strain of the SARS-related coronavirus. The first known cases occurred in November 2002, and the ...
. Recombination in RNA viruses appears to be an adaptation for coping with genome damage. Recombination can occur infrequently between animal viruses of the same species but of divergent lineages. The resulting recombinant viruses may sometimes cause an outbreak of infection in humans.


Classification

Classification is based principally on the type of genome (double-stranded, negative- or positive-single-strand) and gene number and organization. Currently, there are 5 orders and 47 families of RNA viruses recognized. There are also many unassigned species and genera. Related to but distinct from the RNA viruses are the
viroid Viroids are small single-stranded, circular RNAs that are infectious pathogens. Unlike viruses, they have no protein coating. All known viroids are inhabitants of angiosperms (flowering plants), and most cause diseases, whose respective eco ...
s and the RNA satellite viruses. These are not currently classified as RNA viruses and are described on their own pages. A study of several thousand RNA viruses has shown the presence of at least five main taxa: a levivirus and relatives group; a picornavirus supergroup; an alphavirus supergroup plus a flavivirus supergroup; the dsRNA viruses; and the -ve strand viruses. The
lentivirus ''Lentivirus'' is a genus of retroviruses that cause chronic and deadly diseases characterized by long incubation periods, in humans and other mammalian species. The genus includes the human immunodeficiency virus (HIV), which causes AIDS. Lent ...
group appears to be basal to all the remaining RNA viruses. The next major division lies between the picornasupragroup and the remaining viruses. The dsRNA viruses appear to have evolved from a +ve RNA ancestor and the -ve RNA viruses from within the dsRNA viruses. The closest relation to the -ve stranded RNA viruses is the
Reoviridae ''Reovirales'' is an order of double-stranded RNA viruses. Member viruses, called reoviruses, have a wide host range, including vertebrates, invertebrates, plants, protists and fungi. They lack lipid envelopes and package their segmented geno ...
.


Positive-strand RNA viruses Positive-strand RNA viruses (+ssRNA viruses) are a group of related viruses that have positive-sense, single-stranded genomes made of ribonucleic acid. The positive-sense genome can act as messenger RNA (mRNA) and can be directly translated int ...

This is the single largest group of RNA viruses and has been organized by the ICTV into the phyla '' Kitrinoviricota'', '' Lenarviricota'', and '' Pisuviricota'' in the kingdom ''
Orthornavirae ''Orthornavirae'' is a kingdom of viruses that have genomes made of ribonucleic acid (RNA), including genes which encode an RNA-dependent RNA polymerase (RdRp). The RdRp is used to transcribe the viral RNA genome into messenger RNA (mRNA) and t ...
'' and
realm A realm is a community or territory over which a sovereign rules. The term is commonly used to describe a monarchical or dynastic state. A realm may also be a subdivision within an empire, if it has its own monarch, e.g. the German Empire. Etymo ...
''
Riboviria ''Riboviria'' is a Realm (virology), realm of viruses that includes all viruses that use a homologous RNA-dependent polymerase for replication. It includes RNA viruses that Genetic code, encode an RNA-dependent RNA polymerase, as well as Pararnavi ...
''. Positive-strand RNA viruses can also be classified based on the RNA-dependent RNA polymerase. Three groups have been recognised: # Bymoviruses, comoviruses, nepoviruses, nodaviruses, picornaviruses, potyviruses, sobemoviruses and a subset of luteoviruses (beet western yellows virus and potato leafroll virus)—the picorna like group (Picornavirata). # Carmoviruses, dianthoviruses, flaviviruses, pestiviruses, statoviruses, tombusviruses, single-stranded RNA bacteriophages, hepatitis C virus and a subset of luteoviruses (barley yellow dwarf virus)—the flavi like group (Flavivirata). # Alphaviruses, carlaviruses, furoviruses, hordeiviruses, potexviruses, rubiviruses, tobraviruses, tricornaviruses, tymoviruses, apple chlorotic leaf spot virus, beet yellows virus and hepatitis E virus—the alpha like group (Rubivirata). A division of the alpha-like (Sindbis-like) supergroup on the basis of a novel domain located near the N termini of the proteins involved in viral replication has been proposed. The two groups proposed are: the 'altovirus' group (alphaviruses, furoviruses, hepatitis E virus, hordeiviruses, tobamoviruses, tobraviruses, tricornaviruses and probably rubiviruses); and the 'typovirus' group (apple chlorotic leaf spot virus, carlaviruses, potexviruses and tymoviruses). The alpha like supergroup can be further divided into three
clades In biology, a clade (), also known as a monophyletic group or natural group, is a group of organisms that is composed of a common ancestor and all of its descendants. Clades are the fundamental unit of cladistics, a modern approach to taxonomy ...
: the rubi-like, tobamo-like, and tymo-like viruses. Additional work has identified five groups of positive-stranded RNA viruses containing four, three, three, three, and one order(s), respectively. These fourteen orders contain 31 virus families (including 17 families of plant viruses) and 48 genera (including 30 genera of plant viruses). This analysis suggests that alphaviruses and flaviviruses can be separated into two families—the Togaviridae and Flaviridae, respectively—but suggests that other taxonomic assignments, such as the pestiviruses, hepatitis C virus, rubiviruses, hepatitis E virus, and arteriviruses, may be incorrect. The coronaviruses and toroviruses appear to be distinct families in distinct orders and not distinct genera of the same family as currently classified. The luteoviruses appear to be two families rather than one, and apple chlorotic leaf spot virus appears not to be a closterovirus but a new genus of the Potexviridae.


Evolution

The evolution of the picornaviruses based on an analysis of their RNA polymerases and
helicase Helicases are a class of enzymes that are vital to all organisms. Their main function is to unpack an organism's genetic material. Helicases are motor proteins that move directionally along a nucleic double helix, separating the two hybridized ...
s appears to date to the divergence of
eukaryote The eukaryotes ( ) constitute the Domain (biology), domain of Eukaryota or Eukarya, organisms whose Cell (biology), cells have a membrane-bound cell nucleus, nucleus. All animals, plants, Fungus, fungi, seaweeds, and many unicellular organisms ...
s. Their putative ancestors include the bacterial group II
retroelement Retrotransposons (also called Class I transposable elements) are transposable element, mobile elements which move in the host genome by converting their transcribed RNA into DNA through reverse transcription. Thus, they differ from Class II trans ...
s, the family of HtrA
protease A protease (also called a peptidase, proteinase, or proteolytic enzyme) is an enzyme that catalysis, catalyzes proteolysis, breaking down proteins into smaller polypeptides or single amino acids, and spurring the formation of new protein products ...
s and DNA
bacteriophage A bacteriophage (), also known informally as a phage (), is a virus that infects and replicates within bacteria. The term is derived . Bacteriophages are composed of proteins that Capsid, encapsulate a DNA or RNA genome, and may have structu ...
s. Partitiviruses are related to and may have evolved from a totivirus ancestor. Hypoviruses and barnaviruses appear to share an ancestry with the potyvirus and sobemovirus lineages respectively.


Double-stranded RNA viruses

This analysis also suggests that the dsRNA viruses are not closely related to each other but instead belong to four additional classes—Birnaviridae, Cystoviridae, Partitiviridae, and Reoviridae—and one additional order (Totiviridae) of one of the classes of positive ssRNA viruses in the same subphylum as the positive-strand RNA viruses. One study has suggested that there are two large clades: One includes the families ''Caliciviridae'', ''Flaviviridae'', and ''Picornaviridae'' and a second that includes the families ''Alphatetraviridae'', ''Birnaviridae'', ''Cystoviridae'', ''Nodaviridae'', and ''Permutotretraviridae''.


Negative strand RNA viruses

These viruses have multiple types of genome ranging from a single RNA molecule up to eight segments. Despite their diversity it appears that they may have originated in
arthropod Arthropods ( ) are invertebrates in the phylum Arthropoda. They possess an arthropod exoskeleton, exoskeleton with a cuticle made of chitin, often Mineralization (biology), mineralised with calcium carbonate, a body with differentiated (Metam ...
s and to have diversified from there.


Satellite viruses

A number of satellite viruses—viruses that require the assistance of another virus to complete their life cycle—are also known. Their taxonomy has yet to be settled. The following four genera have been proposed for positive sense single stranded RNA satellite viruses that infect plants— Albetovirus,
Aumaivirus Maize white line mosaic satellite virus (syn. Satellite maize white line mosaic virus, Satellite virus of maize white line mosaic virus, SMWLMV, SV-MWLMV) is a plant satellite virus. It is the only species in genus ''Aumaivirus'', which is a mem ...
,
Papanivirus Panicum mosaic satellite virus (SPMV) is a plant satellite virus. It is the sole species in the genus ''Papanivirus'', which is the sole genus in the family ''Pamosaviridae''. It only infects grasses which are infected by Panicum mosaic virus. ...
and
Virtovirus ''Tobacco virtovirus 1'', informally called Tobacco mosaic satellite virus, Satellite tobacco mosaic virus (STMV), or tobacco mosaic satellite virus, is a satellite virus first reported in ''Nicotiana glauca'' from southern California, U.S.. It ...
. A family—
Sarthroviridae ''Macronovirus'' is the only genus of the family ''Sarthroviridae''. It contains one species: Extra small virus (XSV, ''Macronovirus macrobrachii''). It is found in The French West Indies, Thailand, Taiwan, China, and India. Etymology The ...
which includes the genus
Macronovirus ''Macronovirus'' is the only genus of the family ''Sarthroviridae''. It contains one species: Extra small virus (XSV, ''Macronovirus macrobrachii''). It is found in The French West Indies, Thailand, Taiwan, China, and India. Etymology The ...
—has been proposed for the positive sense single stranded RNA satellite viruses that infect
arthropod Arthropods ( ) are invertebrates in the phylum Arthropoda. They possess an arthropod exoskeleton, exoskeleton with a cuticle made of chitin, often Mineralization (biology), mineralised with calcium carbonate, a body with differentiated (Metam ...
s.


Group III – dsRNA viruses

There are twelve families and a number of unassigned genera and species recognised in this group. * Family Amalgaviridae * Family
Birnaviridae ''Birnaviridae'' is a family of double-stranded RNA viruses. Salmonid fish, birds and insects serve as natural hosts. There are currently 11 species in this family, divided among seven genera. Diseases associated with this family include infec ...
* Family Chrysoviridae * Family Cystoviridae * Family
Endornaviridae ''Endornaviridae'' is a family of viruses. Plants, fungi, and oomycetes serve as natural hosts. There are 31 species in this family, assigned to 2 genera (''Alphaendornavirus'' and ''Betaendornavirus''). Members of ''Alphaendornavirus'' infect p ...
* Family
Hypoviridae Hypoviruses are a family of virus A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, includi ...
* Family Megabirnaviridae * Family
Partitiviridae ''Partitiviridae'' is a family of double-stranded RNA viruses. Plants, fungi, and protozoa serve as natural hosts. It has been suggested that they can also infect bacteria. The name comes from the Latin ''partitius,'' which means divided, and ...
* Family Picobirnaviridae * Family
Reoviridae ''Reovirales'' is an order of double-stranded RNA viruses. Member viruses, called reoviruses, have a wide host range, including vertebrates, invertebrates, plants, protists and fungi. They lack lipid envelopes and package their segmented geno ...
 – includes
Rotavirus Rotaviruses are the most common cause of diarrhea, diarrhoeal disease among infants and young children. Nearly every child in the world is infected with a rotavirus at least once by the age of five. Immunity (medical), Immunity develops with ...
* Family
Totiviridae ''Totivirus'' is a genus of double-stranded RNA viruses in the family ''Orthototiviridae''. Fungi serve as natural hosts. The name of the group derives from Latin ''toti'' which means undivided or whole. There are 32 species in this genus. Stru ...
* Family Quadriviridae * Genus Botybirnavirus * Unassigned species ** '' Botrytis porri RNA virus 1'' ** '' Circulifer tenellus virus 1'' ** '' Colletotrichum camelliae filamentous virus 1'' ** '' Cucurbit yellows associated virus'' ** '' Sclerotinia sclerotiorum debilitation-associated virus'' ** '' Spissistilus festinus virus 1''


Group IV – positive-sense ssRNA viruses

There are three orders and 34 families recognised in this group. In addition, there are a number of unclassified species and genera. * Order
Nidovirales ''Nidovirales'' is an order of Viral envelope, enveloped, positive-strand RNA viruses which infect vertebrates and invertebrates. Host organisms include mammals, birds, reptiles, amphibians, fish, arthropods, Mollusca, molluscs, and helminths. Th ...
** Family
Arteriviridae ''Arteriviridae'' is a family of enveloped, positive-strand RNA viruses in the order '' Nidovirales'' which infect vertebrates. Host organisms include equids, pigs, Possums, nonhuman primates, and rodent Rodents (from Latin , 'to gn ...
** Family
Coronaviridae ''Coronaviridae'' is a family (biology), family of Viral envelope, enveloped, positive-strand RNA viruses which infect fish, amphibians, birds, and mammals. The group includes the subfamilies ''Letovirinae,'' ''Orthocoronavirinae'', and ''Pitovir ...
– includes
Human coronavirus Coronaviruses are a group of related RNA viruses that cause diseases in mammals and birds. In humans and birds, they cause respiratory tract infections that can range from mild to lethal. Mild illnesses in humans include some cases of the comm ...
(common cold viruses
HCoV-229E Human coronavirus 229E (HCoV-229E, ''Alphacoronavirus chicagoense'') is a species of coronavirus which infects humans and bats. It is an enveloped, positive-sense, single-stranded RNA virus which enters its host cell by binding to the APN rec ...
, HCoV-HKU1,
HCoV-NL63 Human coronavirus NL63 (HCoV-NL63, ''Alphacoronavirus amsterdamense'') is a species of coronavirus, assigned to the subgenus '' Setracovirus'' and the genus ''Alphacoronavirus''. It was identified in late 2004 in patients in the Netherlands by Li ...
, and HCoV-OC43),
MERS-CoV Middle East respiratory syndrome–related coronavirus (MERS-CoV, ''Betacoronavirus cameli'') or EMC/2012 ( HCoV-EMC/2012), is the virus that causes Middle East respiratory syndrome (MERS). It is a species of coronavirus which infects humans, ba ...
,
SARS-CoV-1 Severe acute respiratory syndrome coronavirus 1 (SARS-CoV-1), previously known as severe acute respiratory syndrome coronavirus (SARS-CoV), is a strain (biology), strain of coronavirus that causes severe acute respiratory syndrome (SARS), the ...
and
SARS-CoV-2 Severe acute respiratory syndrome coronavirus 2 (SARS‑CoV‑2) is a strain of coronavirus that causes COVID-19, the respiratory illness responsible for the COVID-19 pandemic. The virus previously had the Novel coronavirus, provisional nam ...
** Family
Mesoniviridae ''Mesoniviridae'' is a family of enveloped, positive-strand RNA viruses in the order ''Nidovirales'' which infect mosquitoes Mosquitoes, the Culicidae, are a family of small flies consisting of 3,600 species. The word ''mosquito'' (form ...
** Family
Roniviridae ''Okavirus'' is a genus of enveloped positive-strand RNA viruses which infect crustaceans. Host organisms are mostly shrimp. Viruses associated with the genus include: gill-associated virus (GAV) which causes reddening, biofouling with exopara ...
* Order
Picornavirales ''Picornavirales'' is an order of viruses with vertebrate, invertebrate, protist and plant hosts. The name has a dual etymology. First, ''picorna-'' is an acronym for poliovirus, insensitivity to ether, coxsackievirus, orphan virus, rhinovirus, ...
** Family Dicistroviridae ** Family
Iflaviridae ''Iflaviridae'' is a family of positive sense RNA viruses insect-infecting viruses. Some of the insects commonly infected by iflaviruses include aphids, leafhoppers, flies, bees, ants, silkworms and wasps. The name "Ifla" is derived from the ...
** Family Marnaviridae ** Family
Picornaviridae Picornaviruses are a group of related nonenveloped RNA viruses which infect vertebrates including fish, mammals, and birds. They are viruses that represent a large family of small, positive-sense, single-stranded RNA viruses with a 30 nm ...
– includes
Poliovirus Poliovirus, the causative agent of polio (also known as poliomyelitis), is a serotype of the species '' Enterovirus C'', in the family of '' Picornaviridae''. There are three poliovirus serotypes, numbered 1, 2, and 3. Poliovirus is composed ...
,
Rhinovirus The rhinovirus (from the "nose", , romanized: "of the nose", and the ) is a Positive-sense single stranded RNA virus, positive-sense, single-stranded RNA virus belonging to the genus ''Enterovirus'' in the family ''Picornaviridae''. Rhinoviru ...
(a common cold virus),
Hepatitis A Hepatitis A is an infectious liver disease caused by Hepatitis A virus (HAV); it is a type of viral hepatitis. Many cases have few or no symptoms, especially in the young. The time between infection and symptoms, in those who develop them, is ...
virus ** Family
Secoviridae ''Secoviridae'' is a family of viruses A virus is a submicroscopic infectious agent that replicates only inside the living cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bact ...
includes subfamily
Comovirinae ''Comovirinae'' is a subfamily of viruses in the order ''Picornavirales'', in the family ''Secoviridae''; its genera were formerly classified in the family ''Comoviridae''. Plants serve as natural hosts. The subfamily contains four genera. Taxo ...
** Genus Bacillariornavirus ** Species
Kelp fly virus Kelps are large brown algae or seaweeds that make up the order Laminariales. There are about 30 different genera. Despite its appearance and use of photosynthesis in chloroplasts, kelp is technically not a plant but a stramenopile (a group conta ...
* Order
Tymovirales ''Tymovirales'' is an order of viruses with five families. The group consists of viruses which have positive-sense, single-stranded RNA genomes. Their genetic material is protected by a special coat protein. Description Tymoviruses are mainly ...
** Family
Alphaflexiviridae ''Alphaflexiviridae'' is a family of viruses in the order ''Tymovirales''. Plants and fungi serve as natural hosts. There are 65 species in this family, assigned to six genera. Diseases associated with this family include: mosaic and ringspot sy ...
** Family
Betaflexiviridae ''Betaflexiviridae'' is a family of viruses A virus is a submicroscopic infectious agent that replicates only inside the living cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including ...
** Family Gammaflexiviridae ** Family
Tymoviridae ''Tymoviridae'' is a family of single-stranded positive sense RNA viruses in the order '' Tymovirales''. Plants serve as natural hosts. The feamily has three genera. Taxonomy The family includes the following three genera: * '' Maculavirus'' * ...
* Unassigned ** Family
Alphatetraviridae ''Alphatetraviridae'' is a family of viruses. Moths and butterflies serve as natural hosts. There are two genera in the family. Infection outcome varies from unapparent to lethal. Taxonomy The following genera are assigned to the family: *'' ...
** Family Alvernaviridae ** Family
Astroviridae Astroviruses (''Astroviridae'') are a type of virus that was first discovered in 1975 using electron microscopes following an outbreak of diarrhea in humans. In addition to humans, astroviruses have now been isolated from numerous mammalian ani ...
** Family Barnaviridae ** Family
Benyviridae ''Benyvirus'' is a genus of virus A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, includ ...
** Family Botourmiaviridae ** Family
Bromoviridae ''Bromoviridae'' is a family of viruses A virus is a submicroscopic infectious agent that replicates only inside the living cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, including bac ...
** Family
Caliciviridae The ''Caliciviridae'' are a family of "small round structured" viruses, members of Class IV of the Baltimore scheme. Caliciviridae bear resemblance to enlarged picornavirus and was formerly a separate genus within the picornaviridae. They are ...
– includes
Norwalk virus Norovirus, also known as Norwalk virus and sometimes referred to as the winter vomiting disease, is the most common cause of gastroenteritis. Infection is characterized by non-bloody diarrhea, vomiting, and stomach pain. Fever or headaches may ...
** Family Carmotetraviridae ** Family
Closteroviridae ''Closteroviridae'' is a family of viruses. Plants serve as natural hosts. There are seven genera in this family. Diseases associated with this family include: yellowing and necrosis, particularly affecting the phloem. Taxonomy Genome type and ...
** Family
Flaviviridae ''Flaviviridae'' is a family of Viral envelope, enveloped positive-strand RNA viruses which mainly infect mammals and birds. They are primarily spread through arthropod vector (epidemiology), vectors (mainly ticks and mosquitoes). The family gets ...
– includes Yellow fever virus,
West Nile virus West Nile virus (WNV) is a single-stranded RNA virus that causes West Nile fever. It is a member of the family ''Flaviviridae'', from the genus ''Flavivirus'', which also contains the Zika virus, dengue virus, and yellow fever virus. The virus ...
,
Hepatitis C virus The hepatitis C virus (HCV) is a small (55–65 nm in size), enveloped, positive-sense single-stranded RNA virus of the family ''Flaviviridae''. The hepatitis C virus is the cause of hepatitis C and some cancers such as liver cancer ( hepatoc ...
,
Dengue fever Dengue fever is a mosquito-borne disease caused by dengue virus, prevalent in tropical and subtropical areas. Asymptomatic infections are uncommon, mild cases happen frequently; if symptoms appear, they typically begin 3 to 14 days after i ...
virus,
Zika virus Zika virus (ZIKV; pronounced or ) is a member of the virus family ''Flaviviridae''. It is spread by daytime-active ''Aedes'' mosquitoes, such as '' A. aegypti'' and '' A. albopictus''. Its name comes from the Ziika Forest of Uganda, where ...
** Family Fusariviridae ** Family
Hepeviridae ''Hepeviridae'' is a family of viruses. Human, pig, wild boar, sheep, cow, camel, monkey, some rodents, bats and chickens serve as natural hosts. There are two subfamilies with five genera in the family. Diseases associated with this family inc ...
** Family
Hypoviridae Hypoviruses are a family of virus A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, includi ...
** Family Leviviridae ** Family Luteoviridae – includes
Barley yellow dwarf virus Barley yellow dwarf (BYD) is a plant disease caused by the ''barley yellow dwarf virus'' (BYDV), and is the most widely distributed viral disease of cereals. It affects the economically important crop species barley, oats, wheat, maize, triticale ...
** Family Polycipiviridae ** Family Narnaviridae ** Family Nodaviridae ** Family
Permutotetraviridae ''Permutotetraviridae'' is a family of viruses. Lepidopteran insects serve as natural hosts. The family contains one genus that has two species. Diseases associated with this family include: infection outcome varies from unapparent to lethal. ...
** Family
Potyviridae ''Potyviridae'' is a family of positive-strand RNA viruses that encompasses more than 30% of known plant viruses, many of which are of great agricultural significance. The family contains 13 genera that contain 259 species. Structure Potyviri ...
** Family
Sarthroviridae ''Macronovirus'' is the only genus of the family ''Sarthroviridae''. It contains one species: Extra small virus (XSV, ''Macronovirus macrobrachii''). It is found in The French West Indies, Thailand, Taiwan, China, and India. Etymology The ...
** Family Statovirus ** Family
Togaviridae {{Commonscat, Viruses by family This category is for articles about virus families (or redirects to such articles). There should be no subcategories. families Families (biology) ...
– includes
Rubella Rubella, also known as German measles or three-day measles, is an infection caused by the rubella virus. This disease is often mild, with half of people not realizing that they are infected. A rash may start around two weeks after exposure and ...
virus,
Ross River virus Ross River virus (RRV) is a small encapsulated single-strand RNA '' Alphavirus'' endemic to Australia, Papua New Guinea and other islands in the South Pacific. It is responsible for a type of mosquito-borne, non-lethal but extremely debilitati ...
,
Sindbis virus Sindbis virus (SINV) is a member of the ''Togaviridae'' family, in the '' Alphavirus'' genus. The virus was first isolated in 1952 in Cairo, Egypt. The virus is transmitted by mosquitoes (''Culex'' and '' Culiseta''). SINV is linked to Pogosta d ...
,
Chikungunya virus Chikungunya is an infection caused by the chikungunya virus (CHIKV). The disease was first identified in 1952 in Tanzania and named based on the Kimakonde words for "to become contorted". Chikungunya has become a global health concern due to ...
** Family
Tombusviridae ''Tombusviridae'' is a family of single-stranded positive sense RNA plant viruses. The family contains 18 genera in 3 subfamilies. The name is derived from Tomato bushy stunt virus (TBSV). Genome All viruses in the family have a non-segmente ...
** Family
Virgaviridae ''Virgaviridae'' is a family of positive-strand RNA viruses. Plants serve as natural hosts.Adams MJ, Antoniw JF, Kreuze J (2009) Virgaviridae: a new family of rod-shaped plant viruses. Arch Virol 154(12):1967–1972 The name of the family is der ...
** Unassigned genera *** Genus '' Blunervirus'' *** Genus '' Cilevirus'' *** Genus '' Higrevirus'' *** Genus '' Idaeovirus'' *** Genus '' Negevirus'' *** Genus '' Ourmiavirus'' *** Genus '' Polemovirus'' *** Genus '' Sinaivirus'' *** Genus '' Sobemovirus'' ** Unassigned species *** Acyrthosiphon pisum virus *** Bastrovirus *** Blackford virus *** Blueberry necrotic ring blotch virus *** Cadicistrovirus *** Chara australis virus *** Extra small virus ***
Goji berry chlorosis virus Goji, goji berry, or wolfberry () is the sweet fruit of either ''Lycium barbarum'' or ''Lycium chinense'', two closely related species of boxthorn in the nightshade family, Solanaceae. ''L. barbarum'' and ''L. chinense'' fruits are s ...
***
Harmonia axyridis virus 1 In Greek mythology, Harmonia (; / harmoˈnia/, "harmony", "agreement") is the goddess of harmony and concord. Her Greek opposite is Eris and her Roman counterpart is Concordia. Harmonia is most well-known for her marriage to Cadmus and the ...
*** Hepelivirus *** Jingmen tick virus *** Le Blanc virus *** Nedicistrovirus *** Nesidiocoris tenuis virus 1 *** Niflavirus *** Nylanderia fulva virus 1 *** Orsay virus ***
Osedax japonicus RNA virus 1 ''Osedax'' is a genus of deep-sea siboglinid polychaetes, commonly called boneworms, zombie worms, or bone-eating worms. ''Osedax'' is Latin for "bone-eater". The name alludes to how the worms bore into the bones of whale carcasses to reach enc ...
*** Picalivirus *** Planarian secretory cell nidovirus *** Plasmopara halstedii virus ***
Rosellinia necatrix fusarivirus 1 ''Rosellinia'' is a genus of fungi in the family Xylariaceae consisting of over 90 species. Several of the species in this genus are plant pathogens. Fossils of ''Rosellinia'' have been found in 12 million year old rocks from central England. The ...
*** Santeuil virus *** Secalivirus *** Solenopsis invicta virus 3 ***
Wuhan large pig roundworm virus Wuhan; is the capital of Hubei, China. With a population of over eleven million, it is the most populous city in Hubei and the List of cities in China by population, eighth-most-populous city in China. It is also one of the nine National cent ...
Satellite viruses * Family
Sarthroviridae ''Macronovirus'' is the only genus of the family ''Sarthroviridae''. It contains one species: Extra small virus (XSV, ''Macronovirus macrobrachii''). It is found in The French West Indies, Thailand, Taiwan, China, and India. Etymology The ...
* Genus Albetovirus * Genus
Aumaivirus Maize white line mosaic satellite virus (syn. Satellite maize white line mosaic virus, Satellite virus of maize white line mosaic virus, SMWLMV, SV-MWLMV) is a plant satellite virus. It is the only species in genus ''Aumaivirus'', which is a mem ...
* Genus
Papanivirus Panicum mosaic satellite virus (SPMV) is a plant satellite virus. It is the sole species in the genus ''Papanivirus'', which is the sole genus in the family ''Pamosaviridae''. It only infects grasses which are infected by Panicum mosaic virus. ...
* Genus
Virtovirus ''Tobacco virtovirus 1'', informally called Tobacco mosaic satellite virus, Satellite tobacco mosaic virus (STMV), or tobacco mosaic satellite virus, is a satellite virus first reported in ''Nicotiana glauca'' from southern California, U.S.. It ...
* Chronic bee paralysis virus An unclassified astrovirus/hepevirus-like virus has also been described.Pankovics P, Boros Á, Kiss T, Engelmann P, Reuter G (2019) Genetically highly divergent RNA virus with astrovirus-like (5'-end) and hepevirus-like (3'-end) genome organization in carnivorous birds, European roller (''Coracias garrulus''). Infect Genet Evol


Group V – negative-sense ssRNA viruses

With the exception of the
Hepatitis D virus Hepatitis D is a type of viral hepatitis caused by the hepatitis delta virus (HDV). HDV is one of five known hepatitis viruses: A, B, C, D, and E. HDV is considered to be a satellite (a type of subviral agent) because it can propagate only in ...
, this group of viruses has been placed into a single phylum—
Negarnaviricota Negative-strand RNA viruses (−ssRNA viruses) are a group of related viruses that have negative-sense, single-stranded genomes made of ribonucleic acid (RNA). They have genomes that act as complementary strands from which messenger RNA (mRNA) i ...
. This phylum has been divided into two subphyla—
Haploviricotina ''Haploviricotina'' is a subphylum of viruses in the phylum ''Negarnaviricota''. It is one of only two virus subphyla, the other being ''Polyploviricotina'', which is also in ''Negarnaviricota''. The name comes from , the Ancient Greek for 'si ...
and
Polyploviricotina ''Polyploviricotina'' is a subphylum of viruses in the phylum ''Negarnaviricota''. It is one of only two virus subphyla, the other being '' Haploviricotina'', which is also in ''Negarnaviricota''. The name comes from , the Ancient Greek for 'c ...
. Within the subphylum Haploviricotina four classes are currently recognised: Chunqiuviricetes,
Milneviricetes ''Aspiviridae'', formerly ''Ophioviridae'', is a family of segmented negative-strand RNA viruses which infect plants. Member viruses are characterized by an elongated and highly wikt:filamentous, filamentous and flexible nucleocapsid with Helix ...
,
Monjiviricetes ''Monjiviricetes'' is a class of negative-strand RNA viruses which infect fungi, plants, invertebrates, and vertebrates. The name is a portmanteau In linguistics, a blend—also known as a blend word, lexical blend, or portmanteau—is a wor ...
and Yunchangviricetes. In the subphylum Polyploviricotina two classes are recognised:
Ellioviricetes ''Elliovirales'' is an order of viruses. Taxonomy The order contains the following families: * '' Cruliviridae'' * ''Fimoviridae'' * ''Hantaviridae'' * ''Peribunyaviridae'' * '' Phasmaviridae'' * ''Tospoviridae ''Orthotospovirus'' is a genus o ...
and Insthoviricetes. Six classes, seven orders and twenty four families are currently recognized in this group. A number of unassigned species and genera are yet to be classified. * Phylum ''
Negarnaviricota Negative-strand RNA viruses (−ssRNA viruses) are a group of related viruses that have negative-sense, single-stranded genomes made of ribonucleic acid (RNA). They have genomes that act as complementary strands from which messenger RNA (mRNA) i ...
'' ** Subphylum ''
Haploviricotina ''Haploviricotina'' is a subphylum of viruses in the phylum ''Negarnaviricota''. It is one of only two virus subphyla, the other being ''Polyploviricotina'', which is also in ''Negarnaviricota''. The name comes from , the Ancient Greek for 'si ...
'' *** Class '' Chunqiuviricetes'' **** Order '' Muvirales'' ***** Family '' Qinviridae'' *** Class ''
Milneviricetes ''Aspiviridae'', formerly ''Ophioviridae'', is a family of segmented negative-strand RNA viruses which infect plants. Member viruses are characterized by an elongated and highly wikt:filamentous, filamentous and flexible nucleocapsid with Helix ...
'' **** Order '' Serpentovirales'' ***** Family '' Aspiviridae'' *** Class ''
Monjiviricetes ''Monjiviricetes'' is a class of negative-strand RNA viruses which infect fungi, plants, invertebrates, and vertebrates. The name is a portmanteau In linguistics, a blend—also known as a blend word, lexical blend, or portmanteau—is a wor ...
'' **** Order ''
Jingchuvirales ''Jingchuvirales'' is an order of virus A virus is a submicroscopic infectious agent that replicates only inside the living Cell (biology), cells of an organism. Viruses infect all life forms, from animals and plants to microorganisms, i ...
'' ***** Family ''
Chuviridae ''Chuviridae'' is a family of negative-strand RNA viruses which infect arthropod Arthropods ( ) are invertebrates in the phylum Arthropoda. They possess an arthropod exoskeleton, exoskeleton with a cuticle made of chitin, often Mineralizat ...
'' **** Order ''Mononegavirales'' ***** Family ''Borna disease, Bornaviridae'' – Borna disease virus ***** Family ''Filoviridae'' – includes Ebola virus, Marburg virus ***** Family ''Mymonaviridae'' ***** Family ''Nyamiviridae'' ***** Family ''Paramyxoviridae'' – includes Measles virus, Mumps virus, Nipah virus, Hendra virus, and Newcastle disease, NDV ***** Family ''Pneumoviridae'' – includes Human respiratory syncytial virus, RSV and Metapneumovirus ***** Family ''Rhabdoviridae'' – includes Rabies virus ***** Family ''Sunviridae'' ***** Genus Anphevirus ***** Genus Arlivirus ***** Genus Chengtivirus ***** Genus Crustavirus ***** Genus Wastrivirus *** Class '' Yunchangviricetes'' **** Order ''Goujianvirales'' ***** Family ''Yueviridae'' ** Subphylum ''
Polyploviricotina ''Polyploviricotina'' is a subphylum of viruses in the phylum ''Negarnaviricota''. It is one of only two virus subphyla, the other being '' Haploviricotina'', which is also in ''Negarnaviricota''. The name comes from , the Ancient Greek for 'c ...
'' *** Class ''
Ellioviricetes ''Elliovirales'' is an order of viruses. Taxonomy The order contains the following families: * '' Cruliviridae'' * ''Fimoviridae'' * ''Hantaviridae'' * ''Peribunyaviridae'' * '' Phasmaviridae'' * ''Tospoviridae ''Orthotospovirus'' is a genus o ...
'' **** Order ''Bunyavirales'' ***** Family ''Arenaviridae'' – includes Lassa virus ***** Family ''Cruliviridae'' ***** Family ''Feraviridae'' ***** Family ''Fimoviridae'' ***** Family ''Hantaviridae'' ***** Family ''Jonviridae'' ***** Family ''Nairoviridae'' ***** Family ''Peribunyaviridae'' ***** Family ''Phasmaviridae'' ***** Family ''Phenuiviridae'' ***** Family ''Tospoviridae'' ***** Genus ''Tilapineviridae'' *** Class '' Insthoviricetes'' **** Order ''Articulavirales'' ***** Family ''Amnoonviridae'' – includes Taastrup virus ***** Family ''
Orthomyxoviridae ''Orthomyxoviridae'' () is a family of negative-sense single-stranded RNA virus, negative-sense RNA viruses. It includes nine genus, genera: ''Influenza A virus, Alphainfluenzavirus'', ''Influenza B virus, Betainfluenzavirus'', ''Influenza C vir ...
'' – includes Influenza viruses * Unassigned genera: ** Genus ''
Deltavirus Hepatitis D is a type of viral hepatitis caused by the hepatitis delta virus (HDV). HDV is one of five known hepatitis viruses: A, B, C, D, and E. HDV is considered to be a satellite (a type of subviral agent) because it can propagate only in ...
'' – includes Hepatitis D virus (not a true virus, but a subviral agent)


Gallery

File:Lassa virus.JPG, Lassa virus (''Arenaviridae'') File:Lymphocytic choriomeningitis virus.jpg, Lymphocytic choriomeningitis virus (''Arenaviridae'') File:Sin Nombre virus Hanta TEM 1137 lores.jpg, Hantavirus (''Bunyaviridae'') File:Marburg virus.jpg, Marburg virus (''Filoviridae'') File:Ebola virions.png, Ebola virus (''Filoviridae'') File:Influenza virus particle 8430 lores.jpg, Influenza (''
Orthomyxoviridae ''Orthomyxoviridae'' () is a family of negative-sense single-stranded RNA virus, negative-sense RNA viruses. It includes nine genus, genera: ''Influenza A virus, Alphainfluenzavirus'', ''Influenza B virus, Betainfluenzavirus'', ''Influenza C vir ...
'') File:Measles virus.JPG, Measles (''Paramyxoviridae'') File:Mumps virus, negative stained TEM 8758 lores.jpg, Mumps virus (''Paramyxoviridae'') File:Respiratory Syncytial Virus (RSV) EM PHIL 2175 lores.jpg, Human respiratory syncytial virus (''Paramyxoviridae'') File:Parainfluenza virus TEM PHIL 271 lores.jpg, Parainfluenza (''Paramyxoviridae'') File:Rabies Virus EM PHIL 1876.JPG, Rabies (''Rhabdoviridae'') File:Vesicular stomatitis virus (VSV) EM 18 lores.jpg, Vesicular stomatitis virus (''Rhabdoviridae'')


See also

* Virus classification * List of viruses * Virus#Replication cycle, Viral replication * Sense (molecular biology), Positive/negative-sense * Animal virology, Animal viruses * Double-stranded RNA viruses *
Retrovirus A retrovirus is a type of virus that inserts a DNA copy of its RNA genome into the DNA of a host cell that it invades, thus changing the genome of that cell. After invading a host cell's cytoplasm, the virus uses its own reverse transcriptase e ...
* DNA viruses * Norovirus cis-acting replication element * Viroid


Notes


References


External links

*
Animal viruses
{{Authority control RNA viruses, RNA