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Tropicibacter Phthalicicus
''Tropicibacter phthalicicus'' is a Gram-negative, phthalate-degrading and aerobic bacterium from the genus of ''Tropicibacter'' which has been isolated from seawater from the Ishigaki Island in Japan Japan ( ja, 日本, or , and formally , ''Nihonkoku'') is an island country in East Asia. It is situated in the northwest Pacific Ocean, and is bordered on the west by the Sea of Japan, while extending from the Sea of Okhotsk in the north .... References Rhodobacteraceae Bacteria described in 2012 {{Rhodobacterales-stub ...
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Bacteria
Bacteria (; singular: bacterium) are ubiquitous, mostly free-living organisms often consisting of one biological cell. They constitute a large domain of prokaryotic microorganisms. Typically a few micrometres in length, bacteria were among the first life forms to appear on Earth, and are present in most of its habitats. Bacteria inhabit soil, water, acidic hot springs, radioactive waste, and the deep biosphere of Earth's crust. Bacteria are vital in many stages of the nutrient cycle by recycling nutrients such as the fixation of nitrogen from the atmosphere. The nutrient cycle includes the decomposition of dead bodies; bacteria are responsible for the putrefaction stage in this process. In the biological communities surrounding hydrothermal vents and cold seeps, extremophile bacteria provide the nutrients needed to sustain life by converting dissolved compounds, such as hydrogen sulphide and methane, to energy. Bacteria also live in symbiotic and parasitic re ...
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Pseudomonadota
Pseudomonadota (synonym Proteobacteria) is a major phylum of Gram-negative bacteria. The renaming of phyla in 2021 remains controversial among microbiologists, many of whom continue to use the earlier names of long standing in the literature. The phylum Proteobacteria includes a wide variety of pathogenic genera, such as '' Escherichia'', '' Salmonella'', '' Vibrio'', '' Yersinia'', '' Legionella'', and many others.Slonczewski JL, Foster JW, Foster E. Microbiology: An Evolving Science 5th Ed. WW Norton & Company; 2020. Others are free-living (non parasitic) and include many of the bacteria responsible for nitrogen fixation. Carl Woese established this grouping in 1987, calling it informally the "purple bacteria and their relatives". Because of the great diversity of forms found in this group, it was later informally named Proteobacteria, after Proteus, a Greek god of the sea capable of assuming many different shapes (not after the Proteobacteria genus ''Proteus''). In 2021 the In ...
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Alphaproteobacteria
Alphaproteobacteria is a class of bacteria in the phylum Pseudomonadota (formerly Proteobacteria). The Magnetococcales and Mariprofundales are considered basal or sister to the Alphaproteobacteria. The Alphaproteobacteria are highly diverse and possess few commonalities, but nevertheless share a common ancestor. Like all ''Proteobacteria'', its members are gram-negative and some of its intracellular parasitic members lack peptidoglycan and are consequently gram variable. Characteristics The Alphaproteobacteria are a diverse taxon and comprises several phototrophic genera, several genera metabolising C1-compounds (''e.g.'', ''Methylobacterium'' spp.), symbionts of plants (''e.g.'', '' Rhizobium'' spp.), endosymbionts of arthropods (''Wolbachia'') and intracellular pathogens (''e.g. Rickettsia''). Moreover, the class is sister to the protomitochondrion, the bacterium that was engulfed by the eukaryotic ancestor and gave rise to the mitochondria, which are organelles in eukaryoti ...
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Rhodobacterales
Rhodobacterales are an order of the Alphaproteobacteria. Gene transfer agents are viruslike elements produced by Rhodobacterales which transfer DNA and may be an important factor in their evolution. Etymology From Greek ''rhodon'', the rose A rose is either a woody perennial flowering plant of the genus ''Rosa'' (), in the family Rosaceae (), or the flower it bears. There are over three hundred species and tens of thousands of cultivars. They form a group of plants that can b ..., and ''bakterion'', a rod. This refers to the colour of aerobic phototrophic cultures of this order of bacteria which can be pink or red due to the production of carotenoids. References Further reading Scientific journals * * Scientific books * External links Alphaproteobacteria {{Rhodobacterales-stub ...
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Rhodobacteraceae
The Rhodobacteraceae are a family of Pseudomonadota in the order Rhodobacterales within the alpha subgroup.See the NCBIbr>webpage on Rhodobacteraceae Data extracted from the Like all Pseudomonadota, they are gram-negative. It contains chemoorganotrophs and photoheterotrophs bacteria. Many occur in aquatic habitats. Genera Accepted Genera The following genera have been effectively and validly published: * ''Acidimangrovimonas'' Ren ''et al''. 2019 * ''Actibacterium'' Lucena ''et al''. 2012 * '' Aestuariibius'' Park ''et al''. 2018 * '' Aestuariicoccus'' Feng ''et al''. 2018 * '' Aestuariihabitans'' Yoon ''et al''. 2014 * '' Aestuariivita'' Park ''et al''. 2014 * ''Aestuarium'' Yu ''et al''. 2019 * ''Agaricicola'' Chu ''et al''. 2010 * '' Albibacillus'' Hördt ''et al''. 2020 * ''Albidovulum'' Albuquerque ''et al''. 2003 * '' Albimonas'' Lim ''et al''. 2008 * ''Albirhodobacter'' Nupur ''et al''. 2015 * ''Aliiroseovarius'' Park ''et al''. 2015 * ''Aliishimia'' Kim ''et al'' ...
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Tropicibacter
''Tropicibacter'' is a genus of bacteria from the family of Rhodobacteraceae The Rhodobacteraceae are a family of Pseudomonadota in the order Rhodobacterales within the alpha subgroup.See the NCBIbr>webpage on Rhodobacteraceae Data extracted from the Like all Pseudomonadota, they are gram-negative. It contains chemo .... References Rhodobacteraceae Bacteria genera {{Rhodobacterales-stub ...
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LPSN
List of Prokaryotic names with Standing in Nomenclature (LPSN) is an online database that maintains information on the naming and taxonomy of prokaryotes, following the taxonomy requirements and rulings of the International Code of Nomenclature of Prokaryotes. The database was curated from 1997 to June 2013 by Jean P. Euzéby. From July 2013 to January 2020, LPSN was curated by Aidan C. Parte. In February 2020, a new version of LPSN was published as a service of the Leibniz Institute DSMZ, thereby also integrating the Prokaryotic Nomenclature Up-to-date service. References External links List of Prokaryotic names with Standing in NomenclatureInternational Journal of Systematic and Evolutionary Microbiology (IJSEM)
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Gram-negative
Gram-negative bacteria are bacteria that do not retain the crystal violet stain used in the Gram staining method of bacterial differentiation. They are characterized by their cell envelopes, which are composed of a thin peptidoglycan cell wall sandwiched between an inner cytoplasmic cell membrane and a bacterial outer membrane. Gram-negative bacteria are found in virtually all environments on Earth that support life. The gram-negative bacteria include the model organism ''Escherichia coli'', as well as many pathogenic bacteria, such as '' Pseudomonas aeruginosa'', '' Chlamydia trachomatis'', and '' Yersinia pestis''. They are a significant medical challenge as their outer membrane protects them from many antibiotics (including penicillin), detergents that would normally damage the inner cell membrane, and lysozyme, an antimicrobial enzyme produced by animals that forms part of the innate immune system. Additionally, the outer leaflet of this membrane comprises a complex ...
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Phthalate
Phthalates (, ), or phthalate esters, are esters of phthalic acid. They are mainly used as plasticizers, i.e., substances added to plastics to increase their flexibility, transparency, durability, and longevity. They are used primarily to soften polyvinyl chloride (PVC). Note that while phthalates are usually plasticizers, not all plasticizers are phthalates. The two terms are specific and unique and cannot be used interchangeably. Lower-molecular-weight phthalates, those derived from C3-C6 alcohols, are being gradually replaced in many products in the United States, Canada, and European Union over health concerns. They are being replaced by high-molecular-weight phthalates (those with more than six carbons in their backbone, which gives them increased permanency and durability), as well as alternative plasticizers not based on phthalic anhydride. In 2010, the market was still dominated by high-phthalate plasticizers; however, due to legal provisions and growing environmental a ...
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Aerobic Organism
Aerobic means "requiring air," in which "air" usually means oxygen. Aerobic may also refer to * Aerobic exercise, prolonged exercise of moderate intensity * Aerobics, a form of aerobic exercise * Aerobic respiration, the aerobic process of cellular respiration * Aerobic organism, a living thing with an oxygen-based metabolism See also * Anaerobic (other) Anaerobic means "living, active, occurring, or existing in the absence of free oxygen", as opposed to aerobic which means "living, active, or occurring only in the presence of oxygen." Anaerobic may also refer to: * Anaerobic adhesive, a bonding a ...
{{disambiguation ...
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Ishigaki Island
, also known as ''Ishigakijima'', is a Japanese island south-west of Okinawa Hontō and the second-largest island of the Yaeyama Island group, behind Iriomote Island. It is located approximately south-west of Okinawa Hontō. It is within the City of Ishigaki in Okinawa Prefecture. The city functions as the business and transport center of the archipelago. The island is served by New Ishigaki Airport, the largest airport in the Yaeyamas. Much of the island and surrounding waters including Mount Omoto and Kabira Bay are protected as part of Iriomote-Ishigaki National Park. Ishigaki Island, like the rest of Okinawa, is culturally influenced by both Japan and Taiwan due to its location, about off the north eastern coast of Taiwan. History A tsunami of record height hit Ishigaki Island in 1771. One of the perpetrators of Aum Shinrikyo's sarin gas attack, Yasuo Hayashi, was arrested on Ishigaki Island 21 months after the attacks and from the scene of the crime. Ishigaki ...
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Japan
Japan ( ja, 日本, or , and formally , ''Nihonkoku'') is an island country in East Asia. It is situated in the northwest Pacific Ocean, and is bordered on the west by the Sea of Japan, while extending from the Sea of Okhotsk in the north toward the East China Sea, Philippine Sea, and Taiwan in the south. Japan is a part of the Ring of Fire, and spans an archipelago of 6852 islands covering ; the five main islands are Hokkaido, Honshu (the "mainland"), Shikoku, Kyushu, and Okinawa. Tokyo is the nation's capital and largest city, followed by Yokohama, Osaka, Nagoya, Sapporo, Fukuoka, Kobe, and Kyoto. Japan is the eleventh most populous country in the world, as well as one of the most densely populated and urbanized. About three-fourths of the country's terrain is mountainous, concentrating its population of 123.2 million on narrow coastal plains. Japan is divided into 47 administrative prefectures and eight traditional regions. The Greater Tokyo Ar ...
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