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Psittacopasseres
Psittacopasseres is a taxon of birds consisting of the Passeriformes (passerines, a large group of perching birds) and Psittaciformes (parrots). Per Ericson and colleagues, in analysing genomic DNA, revealed a lineage comprising passerines, psittacines and Falconiformes. The group was proposed following an alignment of nuclear intron sequences by Shannon Hackett et al. in 2008. It was formally named as ''Psittacopasserae'' in a 2011 ''Nature Communications'' article by Alexander Suh and other authors working with Jürgen Schmitz's group, based on genetic analysis of the insertion of retroposons into the genomes of key avian lineages over the course of evolution during the Mesozoic Era. Significance in the evolution of birdsong Passerines are renowned as songbirds (technically this word refers to a clade of passerines), and parrots share a capacity for vocal learning Vocal learning is the ability to modify acoustic and syntactic sounds, acquire new sounds via imitation, and produce ...
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Eocene
The Eocene ( ) Epoch is a geological epoch that lasted from about 56 to 33.9 million years ago (mya). It is the second epoch of the Paleogene Period in the modern Cenozoic Era. The name ''Eocene'' comes from the Ancient Greek (''ēṓs'', " dawn") and (''kainós'', "new") and refers to the "dawn" of modern ('new') fauna that appeared during the epoch. The Eocene spans the time from the end of the Paleocene Epoch to the beginning of the Oligocene Epoch. The start of the Eocene is marked by a brief period in which the concentration of the carbon isotope 13C in the atmosphere was exceptionally low in comparison with the more common isotope 12C. The end is set at a major extinction event called the ''Grande Coupure'' (the "Great Break" in continuity) or the Eocene–Oligocene extinction event, which may be related to the impact of one or more large bolides in Siberia and in what is now Chesapeake Bay. As with other geologic periods, the strata that define the start and e ...
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Zygodactylidae
Zygodactylidae is a family of extinct birds found in Europe and North America from the Eocene epoch to the Middle Miocene. First named in 1971, based on fragmentary remains of two species from Germany, a more complete description of the birds became possible in 2008 when a number of other, better-preserved fossil species were assigned to the family based on a number of shared characteristics. The name of the group comes from the presence of a zygodactyl foot, with two toes projecting forward, and two to the rear. This is the same arrangement as seen in living parrots and woodpeckers, and the zygodactylids were at one time thought to be related to the woodpecker family. More recent analyses, however, have shown that they are more likely to be the sister clade to the passerine A passerine () is any bird of the order Passeriformes (; from Latin 'sparrow' and '-shaped'), which includes more than half of all bird species. Sometimes known as perching birds, passerines are distin ...
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Songbird
A songbird is a bird belonging to the suborder Passeri of the perching birds ( Passeriformes). Another name that is sometimes seen as the scientific or vernacular name is Oscines, from Latin ''oscen'', "songbird". The Passeriformes contains 5000 or so speciesEdwards, Scott V. and John Harshman. 2013. Passeriformes. Perching Birds, Passerine Birds. Version 06 February 2013 (under construction). http://tolweb.org/Passeriformes/15868/2013.02.06 in The Tree of Life Web Project, http://tolweb.org/ ccessed 2017/12/11 found all over the world, in which the vocal organ typically is developed in such a way as to produce a diverse and elaborate bird song. Songbirds form one of the two major lineages of extant perching birds (~4000 species), the other being the Tyranni (~1000 species), which are most diverse in the Neotropics and absent from many parts of the world. The Tyranni have a simpler syrinx musculature, and while their vocalizations are often just as complex and striking as th ...
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Mesozoic Era
The Mesozoic Era ( ), also called the Age of Reptiles, the Age of Conifers, and colloquially as the Age of the Dinosaurs is the second-to-last era of Earth's geological history, lasting from about , comprising the Triassic, Jurassic and Cretaceous Periods. It is characterized by the dominance of archosaurian reptiles, like the dinosaurs; an abundance of conifers and ferns; a hot greenhouse climate; and the tectonic break-up of Pangaea. The Mesozoic is the middle of the three eras since complex life evolved: the Paleozoic, the Mesozoic, and the Cenozoic. The era began in the wake of the Permian–Triassic extinction event, the largest well-documented mass extinction in Earth's history, and ended with the Cretaceous–Paleogene extinction event, another mass extinction whose victims included the non-avian dinosaurs, pterosaurs, mosasaurs, and plesiosaurs. The Mesozoic was a time of significant tectonic, climatic, and evolutionary activity. The era witnessed the gradual rif ...
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Retroposon
Retroposons are repetitive DNA fragments which are inserted into chromosomes after they had been reverse transcribed from any RNA molecule. Difference between retroposons and retrotransposons In contrast to retrotransposons, retroposons never encode reverse transcriptase (RT) (but see below). Therefore, they are non-autonomous elements with regard to transposition activity (as opposed to transposons). Non-long terminal repeat (LTR) retrotransposons such as the human LINE1 elements are sometimes falsely referred to as retroposons. However, this depends on the author. For example, Howard Temin published the following definition: Retroposons encode RT but are devoid of long terminal repeats (LTRs), for example long interspersed elements (LINEs). Retrotransposons also feature LTRs and retroviruses, in addition, are packaged as viral particles (virions). Retrosequences are non-autonomous elements devoid of RT. They are retroposed with the aid of the machinery of autonomous element ...
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Nature Communications
''Nature Communications'' is a peer-reviewed, open access, scientific journal published by Nature Portfolio since 2010. It is a multidisciplinary journal and it covers the natural sciences, including physics, chemistry, earth sciences, medicine, and biology. The journal has editorial offices in London, Berlin, New York City, and Shanghai. The founding editor-in-chief was Lesley Anson, followed by Joerg Heber, Magdalena Skipper, and Elisa De Ranieri. As of 2022, the editors are Nathalie Le Bot for health and clinical sciences, Stephane Larochelle for biological sciences, Enda Bergin for chemistry and biotechnology, and Prabhjot Saini for physics and earth sciences. Starting October 2014, the journal only accepted submissions from authors willing to pay an article processing charge. Until the end of 2015, part of the published submissions were only available to subscribers. In January 2016, all content became freely accessible. Starting from 2017, the journal offers a depositio ...
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Falconiformes
The order Falconiformes () is represented by the extant family Falconidae (falcons and caracaras) and a handful of enigmatic Paleogene species. Traditionally, the other bird of prey families Cathartidae (New World vultures and condors), Sagittariidae (secretarybird), Pandionidae (ospreys), Accipitridae (hawks) were classified in Falconiformes. A variety of comparative genome analysis published since 2008, however, found that falcons are part of a clade of birds called Australaves, which also includes seriemas, parrots and passerines. Within Australaves falcons are more closely related to the parrot-passerine clade ( Psittacopasserae), which together they form the clade Eufalconimorphae. The hawks and vultures occupy a basal branch in the clade Afroaves in their own clade Accipitrimorphae, closer to owls and woodpeckers. See below cladogram of Telluraves relationships based on Braun & Kimball (2021): The fossil record of Falconiformes ''sensu stricto'' is poorly do ...
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Parrot
Parrots, also known as psittacines (), are birds of the roughly 398 species in 92 genera comprising the order Psittaciformes (), found mostly in tropical and subtropical regions. The order is subdivided into three superfamilies: the Psittacoidea ("true" parrots), the Cacatuoidea (cockatoos), and the Strigopoidea (New Zealand parrots). One-third of all parrot species are threatened by extinction, with higher aggregate extinction risk ( IUCN Red List Index) than any other comparable bird group. Parrots have a generally pantropical distribution with several species inhabiting temperate regions in the Southern Hemisphere, as well. The greatest diversity of parrots is in South America and Australasia. Characteristic features of parrots include a strong, curved bill, an upright stance, strong legs, and clawed zygodactyl feet. Many parrots are vividly coloured, and some are multi-coloured. Most parrots exhibit little or no sexual dimorphism in the visual spectrum. They form t ...
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Passerine
A passerine () is any bird of the order Passeriformes (; from Latin 'sparrow' and '-shaped'), which includes more than half of all bird species. Sometimes known as perching birds, passerines are distinguished from other orders of birds by the arrangement of their toes (three pointing forward and one back), which facilitates perching. With more than 140 families and some 6,500 identified species, Passeriformes is the largest clade of birds and among the most diverse clades of terrestrial vertebrates, representing 60% of birds.Ericson, P.G.P. et al. (2003Evolution, biogeography, and patterns of diversification in passerine birds ''J. Avian Biol'', 34:3–15.Selvatti, A.P. et al. (2015"A Paleogene origin for crown passerines and the diversification of the Oscines in the New World" ''Molecular Phylogenetics and Evolution'', 88:1–15. Passerines are divided into three clades: Acanthisitti (New Zealand wrens), Tyranni (suboscines), and Passeri (oscines or songbirds). The passe ...
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Bird
Birds are a group of warm-blooded vertebrates constituting the class Aves (), characterised by feathers, toothless beaked jaws, the laying of hard-shelled eggs, a high metabolic rate, a four-chambered heart, and a strong yet lightweight skeleton. Birds live worldwide and range in size from the bee hummingbird to the ostrich. There are about ten thousand living species, more than half of which are passerine, or "perching" birds. Birds have whose development varies according to species; the only known groups without wings are the extinct moa and elephant birds. Wings, which are modified forelimbs, gave birds the ability to fly, although further evolution has led to the loss of flight in some birds, including ratites, penguins, and diverse endemic island species. The digestive and respiratory systems of birds are also uniquely adapted for flight. Some bird species of aquatic environments, particularly seabirds and some waterbirds, have further evolved for swimm ...
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Taxon
In biology, a taxon ( back-formation from '' taxonomy''; plural taxa) is a group of one or more populations of an organism or organisms seen by taxonomists to form a unit. Although neither is required, a taxon is usually known by a particular name and given a particular ranking, especially if and when it is accepted or becomes established. It is very common, however, for taxonomists to remain at odds over what belongs to a taxon and the criteria used for inclusion. If a taxon is given a formal scientific name, its use is then governed by one of the nomenclature codes specifying which scientific name is correct for a particular grouping. Initial attempts at classifying and ordering organisms (plants and animals) were set forth in Carl Linnaeus's system in ''Systema Naturae'', 10th edition (1758), as well as an unpublished work by Bernard and Antoine Laurent de Jussieu. The idea of a unit-based system of biological classification was first made widely available in 1805 in the i ...
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Passerine
A passerine () is any bird of the order Passeriformes (; from Latin 'sparrow' and '-shaped'), which includes more than half of all bird species. Sometimes known as perching birds, passerines are distinguished from other orders of birds by the arrangement of their toes (three pointing forward and one back), which facilitates perching. With more than 140 families and some 6,500 identified species, Passeriformes is the largest clade of birds and among the most diverse clades of terrestrial vertebrates, representing 60% of birds.Ericson, P.G.P. et al. (2003Evolution, biogeography, and patterns of diversification in passerine birds ''J. Avian Biol'', 34:3–15.Selvatti, A.P. et al. (2015"A Paleogene origin for crown passerines and the diversification of the Oscines in the New World" ''Molecular Phylogenetics and Evolution'', 88:1–15. Passerines are divided into three clades: Acanthisitti (New Zealand wrens), Tyranni (suboscines), and Passeri (oscines or songbirds). The passe ...
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