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DPVweb
DPVweb is a database for virologists working on plant viruses combining taxonomic, bioinformatic and symptom data. Description DPVweb is a central web-based source of information about viruses, viroids and satellites of plants, fungi and protozoa. It provides comprehensive taxonomic information, including brief descriptions of each family and genus, and classified lists of virus sequences. It makes use of a large database that also holds detailed, curated, information for all sequences of viruses, viroids and satellites of plants, fungi and protozoa that are complete or that contain at least one complete gene. There are currently about 10,000 such sequences. For comparative purposes, DPVweb also contains a representative sequence of all other fully sequenced virus species with an RNA or single-stranded DNA genome. For each curated sequence the database contains the start and end positions of each feature (gene, non-translated region, etc.), and these have been checked for ac ...
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Plant Virus
Plant viruses are viruses that have the potential to affect plants. Like all other viruses, plant viruses are obligate intracellular parasites that do not have the molecular machinery to replicate without a host. Plant viruses can be pathogenic to vascular plants ("higher plants"). Many plant viruses are rod-shaped, with protein discs forming a tube surrounding the viral genome; isometric particles are another common structure. They rarely have an envelope. The great majority have an RNA genome, which is usually small and single stranded (ss), but some viruses have double-stranded (ds) RNA, ssDNA or dsDNA genomes. Although plant viruses are not as well understood as their animal counterparts, one plant virus has become very recognizable: '' tobacco mosaic virus'' (TMV), the first virus to be discovered. This and other viruses cause an estimated US$60 billion loss in crop yields worldwide each year. Plant viruses are grouped into 73 genera and 49 families. However, these fi ...
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Association Of Applied Biologists
The Association of Applied Biologists (AAB) is a United Kingdom biological science learned society. From its foundation in 1904 until 1934, the institution was the Association of Economic Biologists. It publishes research and holds conferences in different specialisms of applied biology. History The AAB was founded in 1904 as the ''Association of Economic Biologists'' for workers in applied biology "to discuss new discoveries, to exchange experiences and carefully consider the best methods of work" and "promote and advance the science of Economic Biology in its agricultural, horticultural, medical and commercial aspects."''Association of Applied Biologists 1904–2004: A Celebration of Achievement''. Wellesbourne:Association of Applied Biologists, 2004 "Within 10 years of its foundation, the association became the recognised society for all British workers interested in applied biology. Since then, the association has steadily expanded its knowledge." In 1934, the current title ...
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Database
In computing, a database is an organized collection of data or a type of data store based on the use of a database management system (DBMS), the software that interacts with end users, applications, and the database itself to capture and analyze the data. The DBMS additionally encompasses the core facilities provided to administer the database. The sum total of the database, the DBMS and the associated applications can be referred to as a database system. Often the term "database" is also used loosely to refer to any of the DBMS, the database system or an application associated with the database. Before digital storage and retrieval of data have become widespread, index cards were used for data storage in a wide range of applications and environments: in the home to record and store recipes, shopping lists, contact information and other organizational data; in business to record presentation notes, project research and notes, and contact information; in schools as flash c ...
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Virology
Virology is the Scientific method, scientific study of biological viruses. It is a subfield of microbiology that focuses on their detection, structure, classification and evolution, their methods of infection and exploitation of host (biology), host cell (biology), cells for reproduction, their interaction with host organism physiology and immunity, the diseases they cause, the techniques to isolate and culture them, and their use in research and therapy. The identification of the causative agent of tobacco mosaic disease (TMV) as a novel pathogen by Martinus Beijerinck (1898) is now acknowledged as being the history of virology, official beginning of the field of virology as a discipline distinct from bacteriology. He realized the source was neither a bacterial nor a fungal infection, but something completely different. Beijerinck used the word "virus" to describe the mysterious agent in his 'contagium vivum fluidum' ('contagious living fluid'). Rosalind Franklin proposed the ...
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Viral Plant Pathogens And Diseases
The word ''Viral'' means "relating to viruses" (small infectious agents). It may also refer to: Viral behavior, or virality Memetic behavior likened that of a virus, for example: * Viral marketing, the use of existing social networks to spread a marketing message * Viral phenomenon, relating to contagion theory or the "virality" of network culture, such as a meme * Viral video Viral videos are video, videos that become popular through viral phenomenon, a viral process of Internet sharing, primarily through video sharing websites such as YouTube as well as social media and email.Lu Jiang, Yajie Miao, Yi Yang, ZhenZhon ..., a video that quickly attains a high popularity Titled works * Viral (2016 American film), ''Viral'' (2016 American film), a 2016 American science fiction horror drama * Viral (2016 Hindi film), ''Viral'' (2016 Hindi film), an Indian Bollywood film based on social media * Viral (upcoming film), ''Viral'' (upcoming film), an American psychological thri ...
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Biological Databases
Biological databases are libraries of biological sciences, collected from scientific experiments, published literature, high-throughput experiment technology, and computational analysis. They contain information from research areas including genomics, proteomics, metabolomics, microarray gene expression, and phylogenetics. Information contained in biological databases includes gene function, structure, localization (both cellular and chromosomal), clinical effects of mutations as well as similarities of biological sequences and structures. Biological databases can be classified by the kind of data they collect (see below). Broadly, there are molecular databases (for sequences, molecules, etc.), functional databases (for physiology, enzyme activities, phenotypes, ecology etc), taxonomic databases (for species and other taxonomic ranks), images and other media, or specimens (for museum collections etc.) Databases are important tools in assisting scientists to analyze and explain a ...
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Plant Taxonomy
Plant taxonomy is the science that finds, identifies, describes, classifies, and names plants. It is one of the main branches of taxonomy (the science that finds, describes, classifies, and names living things). Plant taxonomy is closely allied to plant systematics, and there is no sharp boundary between the two. In practice, "plant systematics" involves relationships between plants and their evolution, especially at the higher levels, whereas "plant taxonomy" deals with the actual handling of plant specimens. The precise relationship between taxonomy and systematics, however, has changed along with the goals and methods employed. Plant taxonomy is well known for being turbulent, and traditionally not having any close agreement on circumscription and placement of taxa. See the list of systems of plant taxonomy. Background Classification systems serve the purpose of grouping organisms by characteristics common to each group. Plants are distinguished from animals by various ...
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Molecular Biology
Molecular biology is a branch of biology that seeks to understand the molecule, molecular basis of biological activity in and between Cell (biology), cells, including biomolecule, biomolecular synthesis, modification, mechanisms, and interactions. Though cells and other microscopic structures had been observed in living organisms as early as the 18th century, a detailed understanding of the mechanisms and interactions governing their behavior did not emerge until the 20th century, when technologies used in physics and chemistry had advanced sufficiently to permit their application in the biological sciences. The term 'molecular biology' was first used in 1945 by the English physicist William Astbury, who described it as an approach focused on discerning the underpinnings of biological phenomena—i.e. uncovering the physical and chemical structures and properties of biological molecules, as well as their interactions with other molecules and how these interactions explain observ ...
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Transmission Of Plant Viruses
Transmission of plant viruses is the movement of plant viruses between organisms. Background Viruses are known to infect both plant cells and animal cells. Since viruses are obligate intracellular parasites they must develop direct methods of transmission, between hosts, in order to survive. The mobility of animals increases the mechanisms of viral transmission that have evolved, whereas plants remain immobile, and thus plant viruses must rely on environmental factors to be transmitted between hosts. Natural transmission between plant hosts The structural differences between plant and animal cells have resulted in a variety of transmission routes being exploited, enabling the virus to be passed between different host plants. The main difference, from the point of view of a virus, is the cell wall. This forms a tough barrier between the intracellular components and the extracellular environment, which has to be penetrated. These differences, combined with the fact that plants are ...
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Potyviridae
''Potyviridae'' is a family of positive-strand RNA viruses that encompasses more than 30% of known plant viruses, many of which are of great agricultural significance. The family contains 13 genera that contain 259 species. Structure Potyvirid virions are nonenveloped, flexuous filamentous, rod-shaped particles. The diameter is around 11–20 nm, with a length of 650–950 nm. Genome Genomes are linear and usually nonsegmented, around 8–12kb in length, consisting of positive-sense RNA, which is surrounded by a protein coat made up of a single viral encoded protein called a capsid. All induce the formation of virus inclusion bodies called cylindrical inclusions (‘pinwheels’) in their hosts. These consist of a single protein (about 70 Dalton (unit), kDa) made in their hosts from a single viral genome product. Member viruses encode large polypeptides that are cleaved into mature proteins. In 5'–3' order these proteins are * P1 (a serine protease): 83 kDa * H ...
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Flexiviridae
''Flexiviridae'' was a family of viruses named after being filamentous and highly flexible. Members of the family infect plants. In 2009, the family was dissolved and replaced with four families, each of which still contain the name ''flexiviridae'': *''Alphaflexiviridae'' *'' Betaflexiviridae'' *'' Gammaflexiviridae'' *'' Deltaflexiviridae'' ''Flexiviridae'' was ''incertae sedis or is a term used for a taxonomy (biology), taxonomic group where its broader relationships are unknown or undefined. Alternatively, such groups are frequently referred to as "enigmatic taxa". In the system of open nomenclature, uncertainty ...'' but the new families are in '' Tymovirales''. References {{Taxonbar, from=Q3813094 Obsolete virus taxa Unaccepted virus taxa ...
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Codon
Genetic code is a set of rules used by living cells to translate information encoded within genetic material (DNA or RNA sequences of nucleotide triplets or codons) into proteins. Translation is accomplished by the ribosome, which links proteinogenic amino acids in an order specified by messenger RNA (mRNA), using transfer RNA (tRNA) molecules to carry amino acids and to read the mRNA three nucleotides at a time. The genetic code is highly similar among all organisms and can be expressed in a simple table with 64 entries. The codons specify which amino acid will be added next during protein biosynthesis. With some exceptions, a three-nucleotide codon in a nucleic acid sequence specifies a single amino acid. The vast majority of genes are encoded with a single scheme (see the RNA codon table). That scheme is often called the canonical or standard genetic code, or simply ''the'' genetic code, though variant codes (such as in mitochondria) exist. History Efforts to understan ...
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