TomoPy is an open-sourced
Python toolbox to perform
tomographic
Tomography is imaging by sections or sectioning that uses any kind of penetrating wave. The method is used in radiology, archaeology, biology, atmospheric science, geophysics, oceanography, plasma physics, materials science, cosmochemistry, a ...
data processing and image reconstruction.
Overview
Tomographic reconstruction
Tomographic reconstruction is a type of multidimensional inverse problem where the challenge is to yield an estimate of a specific system from a finite number of projection (linear algebra), projections. The mathematical basis for tomographic imag ...
creates three-dimensional views of an object by combining two-dimensional images taken from multiple directions, for example in how a
computer-aided tomography
Tomography is imaging by sections or sectioning that uses any kind of penetrating wave. The method is used in radiology, archaeology, biology, atmospheric science, geophysics, oceanography, plasma physics, materials science, cosmochemistry, a ...
scanner allows 3D views of the heart or brain. Data collection can be rapid, but the required computations are massive. Further, many common experimental perturbations can degrade the quality of tomographs, unless corrections are applied. Unless automated tools make these corrections,
beamline
In accelerator physics, a beamline refers to the trajectory of the beam of particles, including the overall construction of the path segment (guide tubes, diagnostic devices) along a specific path of an accelerator facility. This part is eithe ...
staff can be overwhelmed by data that can be collected far faster than corrections and reconstruction can be performed.
To address the needs for image correction and tomographic reconstruction in an instrument independent manner, the TomoPy code was developed, which is a parallelizable high performance tomography library.
References
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Data processing
Free science software
Image processing software
Python (programming language) scientific libraries
Tomography